genome.fa.s6.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  132  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44654539--44654667	48	2.7	48	81	0	141	24	18	21	34	1.96
44665087--44665180	25	3.8	25	76	5	91	30	25	20	23	1.98
44673090--44673195	52	2.0	52	100	0	212	40	24	3	31	1.73
44684420--44684457	5	7.6	5	100	0	76	18	60	0	21	1.36
44686281--44686314	17	2.0	17	88	0	50	52	5	5	35	1.50
44687831--44687904	38	1.9	38	94	0	130	54	5	6	33	1.50
44687842--44687903	18	3.3	18	68	16	54	53	4	6	35	1.48
44688790--44688873	39	2.1	39	89	6	125	51	1	2	45	1.22
44691942--44691994	25	2.3	23	87	9	72	73	1	0	24	0.93
44700439--44700463	12	2.1	12	100	0	50	44	24	0	32	1.54
44701835--44701890	22	2.4	24	82	5	62	46	10	5	37	1.62
44713446--44713622	33	5.4	33	73	11	139	33	16	22	26	1.96
44715328--44715365	12	3.2	12	88	0	58	21	52	13	13	1.73
44715665--44715714	25	2.0	26	84	11	68	30	0	4	66	1.10
44719641--44719686	14	3.4	14	78	3	58	60	0	2	36	1.09
44719671--44719746	19	3.9	20	73	16	70	55	0	3	40	1.18
44723802--44723844	19	2.4	18	85	11	61	44	13	4	37	1.65
44723835--44723870	14	2.5	15	86	13	58	52	13	0	33	1.41
44727506--44727531	13	2.0	13	100	0	52	23	23	7	46	1.78
44727945--44727979	17	2.1	17	100	0	70	51	11	22	14	1.74
44728128--44728170	10	4.1	10	80	11	50	53	27	4	13	1.60
44731233--44731533	47	6.4	47	91	0	476	32	9	30	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44731655--44731729	37	2.0	37	87	5	107	22	20	30	26	1.98
44733594--44733696	43	2.4	43	100	0	206	22	15	35	26	1.94
44733678--44733751	29	2.6	29	89	4	105	25	16	32	25	1.96
44734062--44734228	39	4.3	39	82	9	155	24	22	27	25	2.00
44734062--44734237	78	2.2	79	80	9	191	25	23	27	23	2.00
44736077--44736104	11	2.5	11	100	0	56	92	0	0	7	0.37
44738096--44738390	47	6.3	47	92	0	455	32	9	30	27	1.88
44738508--44738586	37	2.1	37	88	4	115	25	18	30	25	1.98
44740331--44740485	43	3.6	42	80	14	174	30	28	19	21	1.98
44741169--44741201	17	1.9	17	88	11	50	60	12	6	21	1.53
44746912--44747165	47	5.4	47	90	1	393	32	9	30	27	1.88
44749210--44749310	43	2.4	42	96	3	186	21	15	35	26	1.94
44749292--44749363	29	2.5	29	84	6	85	27	16	29	26	1.97
44749674--44749816	37	3.8	38	79	14	138	24	23	27	24	2.00
44749745--44749819	36	2.1	37	94	2	134	22	24	26	26	2.00
44749748--44749839	36	2.5	37	84	8	118	26	25	26	22	2.00
44751666--44751692	10	2.7	10	100	0	54	88	0	0	11	0.50
44753689--44753989	47	6.4	47	91	0	458	31	9	30	27	1.88
44754112--44754186	37	2.0	37	87	5	107	22	20	30	26	1.98
44755958--44756112	43	3.6	42	80	14	174	30	28	19	21	1.98
44756820--44756853	17	1.9	18	88	5	52	61	11	5	20	1.50
44759414--44759598	79	2.3	82	84	7	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44759395--44759598	40	5.1	40	82	8	238	25	27	22	25	2.00
44761754--44761796	19	2.4	18	85	11	61	44	13	4	37	1.65
44761755--44761806	18	2.8	19	83	11	56	48	13	3	34	1.61
44772953--44773008	14	4.0	14	90	0	85	21	32	5	41	1.76
44772944--44773007	28	2.3	28	91	0	101	25	32	3	39	1.71
44779992--44780023	14	2.4	13	90	10	55	18	6	12	62	1.50
44781218--44781405	72	2.6	71	84	3	225	30	27	18	23	1.97
44787682--44787746	28	2.3	28	94	5	114	29	16	6	47	1.71
44788617--44788673	30	1.9	30	88	0	87	28	17	7	47	1.73
44792230--44792379	64	2.3	64	77	6	142	25	25	26	23	2.00
44795553--44795625	30	2.4	30	84	4	94	10	31	35	21	1.88
44795911--44796026	33	3.5	33	84	1	144	26	25	14	32	1.95
44795934--44796053	33	3.7	31	78	11	107	29	24	14	32	1.94
44796040--44796084	23	2.0	23	86	8	65	24	22	13	40	1.90
44796827--44796874	21	2.2	22	78	14	55	37	14	0	47	1.44
44803600--44803724	33	3.8	33	70	9	85	28	24	12	34	1.92
44803702--44803746	23	2.0	23	91	8	74	22	22	13	42	1.88
44803716--44803788	32	2.2	33	80	11	87	31	21	12	34	1.91
44807380--44807504	33	3.8	33	71	5	92	28	23	13	35	1.92
44807482--44807526	23	2.0	23	91	8	74	22	22	13	42	1.88
44807496--44807568	32	2.2	33	80	11	87	31	21	12	34	1.91
44811154--44811278	33	3.8	33	71	5	92	28	23	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44811256--44811300	23	2.0	23	91	8	74	22	22	13	42	1.88
44811270--44811342	32	2.2	33	80	11	87	31	21	12	34	1.91
44814906--44815021	33	3.5	33	80	5	119	27	24	12	35	1.92
44814906--44815047	66	2.2	65	83	3	178	26	23	12	37	1.91
44815035--44815079	23	2.0	23	91	8	74	22	22	13	42	1.88
44815049--44815121	32	2.2	33	80	11	87	31	21	12	34	1.91
44823096--44823453	175	2.0	175	100	0	716	36	20	10	32	1.86
44823477--44823534	29	2.0	29	96	0	107	48	8	10	32	1.68
44823770--44823835	25	2.6	25	81	13	82	28	22	24	24	1.99
44826833--44826920	27	3.3	27	82	4	99	30	11	15	42	1.83
44828946--44828989	21	2.1	21	83	8	54	27	11	15	45	1.81
44831334--44831360	6	4.5	6	100	0	54	14	0	0	85	0.61
44842774--44842914	71	2.0	71	92	0	237	38	18	17	26	1.92
44847839--44847878	20	2.1	19	90	4	62	40	0	40	20	1.52
44850015--44850053	15	2.6	14	88	8	51	61	0	2	35	1.10
44857327--44857436	38	2.8	39	86	2	159	26	23	12	37	1.91
44859204--44859236	17	1.9	17	88	11	50	9	6	6	78	1.08
44864831--44864950	50	2.4	50	80	5	127	28	19	18	34	1.95
44871228--44871252	12	2.1	12	100	0	50	16	8	16	60	1.58
44871567--44871627	30	2.0	30	87	0	86	29	16	29	24	1.96
44872016--44872282	47	5.7	46	73	10	218	29	20	29	20	1.98
44871969--44872282	93	3.4	92	76	11	341	28	20	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44874064--44874149	44	2.0	44	95	0	154	24	16	17	41	1.89
44875562--44875685	49	2.5	50	84	10	157	26	21	18	33	1.97
44880750--44880782	13	2.6	13	90	4	50	48	12	0	39	1.40
44883692--44883768	5	14.4	5	75	20	59	76	0	6	16	0.98
44883692--44883768	11	7.2	10	75	21	59	76	0	6	16	0.98
44889065--44889097	13	2.6	13	90	4	50	48	12	0	39	1.40
44894634--44894688	11	4.9	11	75	18	51	30	1	5	61	1.29
44895162--44895234	37	2.0	37	100	0	146	32	5	16	45	1.70
44896355--44896424	26	2.7	26	86	0	95	24	22	21	31	1.98
44899984--44900045	22	2.8	21	74	16	54	16	24	11	48	1.78
44899984--44900046	23	2.8	24	76	11	62	15	23	12	47	1.80
44900038--44900099	22	2.8	22	82	0	79	12	22	22	41	1.88
44903190--44903246	25	2.3	24	87	3	78	19	33	15	31	1.93
44905771--44905942	47	3.5	47	79	9	184	30	27	15	27	1.96
44912944--44912972	12	2.5	12	94	5	51	44	6	6	41	1.58
44918430--44918527	33	3.2	33	72	19	120	37	0	7	55	1.28
44918406--44918527	59	2.0	60	96	3	228	39	0	6	54	1.27
44922332--44922643	48	6.5	48	91	0	473	25	19	27	27	1.99
44922287--44922643	96	3.8	95	86	2	481	25	19	28	27	1.98
44925653--44925691	21	1.9	21	84	5	53	41	2	12	43	1.56
44928211--44928313	3	34.7	3	71	16	54	58	2	7	31	1.41
44928217--44928289	30	2.3	33	77	13	82	57	4	9	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44934994--44935042	21	2.4	20	75	3	53	22	6	26	44	1.76
44936254--44936309	28	1.9	29	85	7	78	60	1	3	33	1.24
44940256--44940356	53	1.9	53	87	0	148	37	4	9	47	1.59
44944776--44944850	35	2.1	35	97	0	141	37	18	2	41	1.65
44951225--44951393	46	3.7	46	79	10	191	23	20	26	30	1.98
44951618--44951655	19	2.0	20	85	15	53	36	0	23	39	1.55
44958728--44958900	46	3.7	46	79	10	208	21	20	27	29	1.98
44958725--44958895	93	1.8	93	93	0	297	21	21	28	28	1.98
44959124--44959161	19	2.0	20	85	15	53	36	0	23	39	1.55
44962969--44963094	27	4.7	27	80	10	143	38	22	8	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345