Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  329  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110313674--110313783
16
6.8
16
71
24
56
34
3
1
60
1.25
110325721--110326789
44
24.2
44
81
5
1129
31
14
26
27
1.95
110326115--110326924
266
3.1
266
87
4
980
31
14
26
27
1.95
110328553--110328607
21
2.6
21
77
13
58
32
5
0
61
1.19
110338182--110338206
6
4.2
6
100
0
50
80
0
0
20
0.72
110348977--110349009
8
4.1
8
85
14
50
12
0
0
87
0.53
110353063--110353118
12
4.7
12
74
14
53
64
0
23
12
1.27
110353801--110354667
432
2.0
432
98
0
1689
26
15
18
39
1.90
110354594--110355177
291
2.0
291
100
0
1168
28
20
20
30
1.98
110365944--110366010
28
2.4
28
85
2
91
32
8
2
55
1.46
110369523--110369552
8
3.8
8
90
0
51
43
0
0
56
0.99
110380577--110380628
25
2.1
24
82
3
59
73
1
3
21
1.10
110380616--110380646
16
1.9
16
93
0
53
67
0
6
25
1.14
110381716--110381773
30
1.9
30
82
6
73
12
29
37
20
1.89
110382093--110382138
21
2.2
21
84
7
58
36
2
2
58
1.22
110385538--110385646
46
2.4
44
84
6
139
38
31
2
27
1.71
110390100--110390131
13
2.5
13
94
0
55
56
0
0
43
0.99
110390728--110390968
96
2.5
98
86
3
308
42
1
15
40
1.55
110391013--110391549
126
4.3
125
88
1
797
32
17
21
28
1.96
110394388--110394683
18
16.1
18
71
11
134
38
14
10
36
1.81
110394476--110394683
36
5.8
36
74
9
156
37
15
11
35
1.83
110394482--110394683
72
2.8
71
81
6
221
38
15
10
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110394863--110394967
45
2.3
45
88
0
165
40
20
20
20
1.92
110395376--110395417
5
8.2
5
89
5
57
38
23
0
38
1.55
110396606--110396641
4
8.5
4
88
11
54
0
30
0
69
0.89
110396605--110396640
9
4.1
9
92
7
65
0
33
0
66
0.92
110396605--110396641
13
2.8
13
84
15
58
0
32
0
67
0.91
110396684--110396718
9
4.0
9
88
7
54
17
11
0
71
1.14
110396684--110396730
17
2.7
18
86
6
69
17
10
0
72
1.12
110396684--110396726
13
3.3
13
83
9
52
16
11
0
72
1.13
110396725--110396777
23
2.3
23
84
12
65
37
3
1
56
1.28
110396745--110396797
22
2.3
23
84
9
65
37
5
3
52
1.43
110398030--110398760
116
6.3
116
95
0
1273
47
8
3
40
1.52
110399146--110399188
18
2.4
18
88
0
59
44
9
27
18
1.80
110400913--110400943
15
2.1
15
93
0
53
70
0
6
22
1.09
110400970--110401021
11
4.9
11
74
9
54
44
0
26
28
1.55
110406871--110407096
45
5.0
46
90
2
323
39
14
23
22
1.91
110406871--110407096
91
2.5
91
89
2
330
39
14
23
22
1.91
110412709--110412750
21
2.0
21
100
0
84
23
23
4
47
1.70
110414641--110414668
13
2.2
13
100
0
56
35
28
14
21
1.92
110414657--110414734
39
2.0
39
94
0
138
37
14
12
35
1.84
110415095--110415122
14
2.0
14
100
0
56
14
14
0
71
1.15
110415095--110415135
8
5.4
8
80
11
50
17
12
0
70
1.16
110415327--110415364
21
1.9
20
84
10
51
73
5
15
5
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110415462--110415501
21
1.9
21
89
0
62
55
7
15
22
1.65
110420130--110420374
49
4.9
49
79
4
249
30
25
17
26
1.98
110420131--110420374
100
2.5
98
83
5
303
30
25
18
25
1.98
110422790--110422844
16
3.4
16
84
0
74
36
5
27
30
1.79
110422826--110422919
44
2.1
46
88
4
138
35
5
24
35
1.78
110423091--110423123
17
1.9
17
100
0
66
63
0
0
36
0.95
110423628--110423662
18
1.9
18
94
0
61
34
20
14
31
1.92
110423666--110423787
40
3.0
40
91
0
199
31
18
9
40
1.83
110424847--110424957
47
2.4
47
83
6
145
35
22
16
26
1.95
110432083--110432193
47
2.4
47
83
6
145
35
22
16
26
1.95
110433415--110433527
40
2.8
40
94
0
190
32
15
9
41
1.80
110434700--110434741
21
2.0
20
86
4
57
26
7
30
35
1.83
110434695--110434757
27
2.3
28
88
2
92
25
6
30
38
1.81
110435661--110435703
22
2.0
22
90
0
68
62
11
4
20
1.46
110440664--110440754
47
1.9
47
93
4
157
36
13
21
28
1.91
110444443--110444518
38
2.0
38
89
0
116
47
32
11
7
1.69
110446908--110446951
22
2.0
22
81
4
52
54
6
31
6
1.53
110451367--110451429
31
2.1
29
82
5
72
49
6
1
42
1.37
110451942--110452054
56
2.0
56
98
0
217
34
3
5
56
1.39
110452646--110452709
31
2.1
31
100
0
128
40
9
15
34
1.80
110462520--110462559
19
2.1
19
85
0
53
45
0
12
42
1.42
110465415--110465678
130
2.0
131
84
3
345
31
18
16
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110467834--110467893
18
3.3
18
75
9
59
43
11
15
30
1.82
110470608--110470648
16
2.6
16
78
17
50
21
2
4
70
1.18
110471670--110471741
33
2.2
33
82
2
83
12
9
11
66
1.44
110471915--110471947
9
3.7
9
100
0
66
33
0
0
66
0.92
110474000--110474064
29
2.2
28
81
10
78
38
4
9
47
1.56
110474011--110474072
29
2.1
31
84
6
83
37
8
12
41
1.73
110479819--110479862
22
1.9
24
90
9
74
75
0
0
25
0.81
110479822--110479855
18
1.9
17
94
5
59
76
0
0
23
0.79
110479819--110479876
27
2.2
25
84
6
71
74
0
0
25
0.82
110479849--110479881
17
1.9
17
88
11
50
63
0
0
36
0.95
110483095--110483214
58
2.1
58
100
0
240
40
16
18
25
1.91
110486504--110486545
16
2.4
18
88
7
61
50
0
0
50
1.00
110492810--110492931
61
2.1
58
93
4
208
47
16
9
27
1.76
110499015--110499071
29
2.0
29
92
0
96
45
14
12
28
1.80
110499077--110499101
5
5.0
5
100
0
50
0
20
0
80
0.72
110500494--110500651
80
2.0
80
93
0
271
36
16
18
28
1.92
110507506--110507555
23
2.2
23
85
0
64
26
2
10
62
1.38
110508416--110508440
7
3.6
7
100
0
50
16
0
0
84
0.63
110511090--110511133
4
11.0
4
85
0
52
40
0
9
50
1.34
110511093--110511137
8
5.4
8
84
10
63
37
0
11
51
1.38
110511090--110511141
12
4.2
12
83
9
68
38
0
11
50
1.39
110511095--110511129
18
1.9
18
94
0
61
37
0
11
51
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110511096--110511151
26
2.2
26
87
6
78
39
1
12
46
1.52
110515699--110515726
3
9.3
3
100
0
56
67
0
0
32
0.91
110516191--110516229
20
2.0
20
90
5
62
10
5
20
64
1.44
110516993--110517450
77
5.9
77
88
3
611
35
20
16
27
1.94
110517427--110517474
14
3.5
14
88
5
71
62
4
12
20
1.46
110517457--110517779
77
4.2
76
81
6
375
36
20
16
26
1.94
110517119--110517934
332
2.4
330
88
2
1175
36
20
16
26
1.93
110517762--110517806
14
3.3
14
87
12
67
68
6
6
17
1.33
110517833--110518021
75
2.6
73
85
5
256
33
19
16
30
1.94
110517608--110517956
177
2.0
180
89
4
537
36
20
16
26
1.93
110535603--110536111
78
6.6
78
91
2
791
28
18
21
31
1.97
110536261--110536372
45
2.5
45
94
0
188
29
18
24
27
1.98
110536889--110536961
27
2.7
27
89
4
112
56
19
5
19
1.61
110538168--110538201
17
2.0
17
88
0
50
29
8
14
47
1.75
110543165--110543253
8
10.1
8
70
20
54
65
1
2
31
1.12
110543169--110543230
19
3.4
19
76
13
67
64
0
0
35
0.94
110543182--110543229
18
2.7
19
87
12
75
62
0
0
37
0.95
110543163--110543253
9
10.0
10
71
16
65
64
1
2
31
1.12
110543390--110543428
17
2.3
16
91
8
60
74
2
0
23
0.94
110543379--110543429
17
2.9
17
80
16
59
72
3
0
23
1.01
110543378--110543440
26
2.4
26
81
2
72
71
3
1
23
1.09
110544904--110544957
26
2.1
26
85
0
72
62
3
0
33
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110544901--110544965
9
6.9
10
71
15
50
63
3
0
33
1.10
110544933--110544974
18
2.3
19
83
4
50
66
2
2
28
1.16
110545984--110546063
19
4.3
19
76
12
76
68
2
0
28
1.02
110545981--110546090
28
4.0
28
72
9
91
67
2
1
28
1.15
110545981--110546063
26
3.0
27
77
13
80
68
2
0
28
1.02
110545984--110546127
9
15.8
9
66
19
59
65
2
2
29
1.17
110546184--110546237
19
2.9
19
81
8
58
61
0
3
35
1.14
110546987--110547032
13
3.9
13
76
23
57
54
6
0
39
1.26
110547018--110547064
23
1.9
26
87
12
73
55
4
4
36
1.39
110546987--110547057
34
2.2
30
82
9
79
54
5
1
38
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345