genome.fa.s6.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  152  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51425648--51425673	12	2.2	12	100	0	52	84	0	0	15	0.62
51430089--51430113	12	2.1	12	100	0	50	84	0	0	16	0.63
51433111--51433354	129	1.9	129	89	1	382	30	28	15	25	1.96
51433111--51433354	43	5.7	43	85	1	328	30	28	15	25	1.96
51440900--51441015	28	4.2	28	75	2	101	35	18	20	25	1.96
51443319--51443347	14	2.0	15	93	6	51	51	27	0	20	1.47
51447215--51447386	46	3.7	46	76	13	190	22	20	27	29	1.98
51447208--51447378	93	1.8	93	94	0	306	22	21	28	28	1.99
51448233--51448275	20	2.2	20	82	0	50	51	2	2	44	1.27
51454767--51454939	46	3.7	46	78	13	210	21	21	27	28	1.99
51454764--51454934	93	1.8	93	96	0	315	21	21	28	28	1.99
51456139--51456176	16	2.4	16	100	0	76	42	5	28	23	1.76
51461831--51462031	108	1.8	110	89	4	318	22	24	18	34	1.96
51461831--51462038	55	3.8	53	80	8	224	22	25	17	35	1.95
51468899--51468928	15	2.0	15	100	0	60	40	20	6	33	1.78
51469220--51469250	16	1.9	16	93	0	53	35	22	0	41	1.54
51469442--51469697	55	4.9	51	72	11	140	23	24	16	35	1.95
51469488--51469689	55	3.7	53	78	6	208	24	24	17	33	1.96
51476999--51477253	55	4.8	54	80	7	247	21	24	17	36	1.94
51477046--51477246	108	1.8	110	88	4	309	22	24	17	34	1.96
51488754--51488868	27	4.3	27	85	5	126	22	21	20	35	1.96
51490763--51490797	18	1.9	18	94	0	61	48	8	17	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51496557--51496670	27	4.2	27	88	4	142	19	22	21	35	1.96
51516511--51516683	46	3.7	46	73	10	172	23	19	26	30	1.98
51516508--51516678	93	1.8	93	89	0	270	22	19	27	29	1.98
51526546--51526642	27	3.5	28	90	2	133	26	13	27	31	1.94
51526574--51526656	27	3.0	27	87	5	96	31	12	24	32	1.91
51526546--51526657	28	4.0	27	83	6	98	29	12	25	33	1.92
51529724--51529901	27	6.6	27	83	3	205	26	15	28	29	1.96
51529725--51529880	82	1.9	81	88	3	233	26	15	28	29	1.96
51529721--51529901	82	2.2	81	83	2	229	27	15	27	29	1.96
51531667--51531763	27	3.5	28	90	2	133	26	13	27	31	1.94
51531667--51531776	27	4.0	27	83	7	96	29	12	24	33	1.92
51538180--51538666	27	18.0	27	83	2	557	28	21	9	41	1.83
51538678--51538839	54	3.0	54	86	0	218	35	17	20	25	1.95
51538671--51538842	81	2.1	81	82	3	220	36	17	20	26	1.94
51538675--51538843	27	6.3	27	85	0	194	35	18	20	26	1.95
51539042--51539121	27	3.0	26	90	3	115	20	23	21	35	1.96
51539212--51539270	22	2.7	22	81	0	64	20	25	22	32	1.98
51539435--51539508	27	2.8	27	85	6	89	17	24	21	36	1.95
51539626--51539727	6	16.8	6	74	15	86	19	17	13	49	1.80
51539626--51539727	30	3.4	30	89	6	152	19	17	13	49	1.80
51556547--51556581	18	1.9	18	94	0	61	45	0	0	54	0.99
51566581--51566747	45	3.7	45	90	0	253	32	28	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51571804--51571983	40	4.6	40	81	6	208	25	21	27	25	1.99
51571804--51572019	76	2.8	77	81	7	231	24	21	27	26	1.99
51571804--51572019	40	5.5	39	77	10	176	24	21	27	26	1.99
51572239--51572281	22	2.0	22	86	4	61	32	16	13	37	1.88
51579869--51580052	40	4.6	40	84	4	237	25	23	27	24	2.00
51579869--51580052	80	2.3	80	88	1	262	25	23	27	24	2.00
51589184--51589404	45	4.9	45	86	0	271	34	26	13	25	1.93
51597790--51597925	63	2.1	64	85	5	177	18	25	18	37	1.93
51599763--51600023	27	9.7	27	83	0	333	26	21	9	42	1.83
51599756--51600023	54	5.0	54	87	2	387	26	21	9	42	1.83
51599756--51600037	108	2.6	108	91	3	453	27	20	9	42	1.83
51600032--51600226	27	7.2	27	84	2	205	35	17	20	26	1.94
51600426--51600508	27	3.1	26	87	5	112	19	21	21	37	1.94
51600596--51600654	22	2.7	22	81	0	64	20	25	22	32	1.98
51600804--51600888	27	3.2	25	79	6	62	16	20	21	42	1.89
51600819--51600887	27	2.6	27	86	4	86	18	21	20	39	1.93
51601010--51601135	6	20.8	6	73	13	107	21	17	12	48	1.80
51601010--51601135	30	4.4	30	79	13	156	21	17	12	48	1.80
51601010--51601076	25	2.8	24	86	2	98	20	17	13	47	1.81
51612573--51612753	49	3.7	49	83	5	224	26	20	30	22	1.98
51612799--51612966	90	1.9	90	82	2	212	29	20	26	23	1.99
51612671--51612966	132	2.2	137	81	7	329	28	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51614650--51614709	29	2.1	29	93	0	102	30	13	23	33	1.93
51617408--51617461	27	2.0	27	96	0	99	55	5	22	16	1.62
51618137--51618167	12	2.6	12	94	0	53	3	16	12	67	1.35
51618281--51618312	12	2.7	12	95	0	55	12	9	12	65	1.47
51622036--51622071	18	2.0	18	100	0	72	33	22	0	44	1.53
51635290--51635444	43	3.6	41	77	9	132	25	20	23	30	1.98
51635287--51635423	42	3.2	41	77	11	116	24	18	24	31	1.98
51640680--51640837	43	3.7	43	73	6	133	31	17	22	29	1.96
51645397--51645592	80	2.5	79	90	4	304	28	27	21	22	1.99
51645417--51645592	40	4.4	40	95	0	298	28	27	22	22	1.99
51647318--51647381	28	2.3	28	78	7	69	26	25	20	28	1.99
51655005--51655067	28	2.3	28	81	13	78	28	25	19	26	1.98
51663388--51663446	30	2.0	29	83	12	75	52	16	13	16	1.75
51672659--51672746	40	2.2	40	83	4	106	30	28	11	29	1.92
51675952--51676134	40	4.6	40	83	6	212	26	28	21	24	1.99
51675952--51676134	79	2.3	79	80	8	192	26	28	21	24	1.99
51681173--51681328	56	2.8	54	84	3	177	30	32	19	18	1.96
51693677--51693825	43	3.5	42	79	5	120	28	17	24	28	1.97
51697184--51697234	24	2.2	24	83	13	63	33	1	23	41	1.66
51701548--51701763	70	2.8	76	79	13	230	25	21	27	25	1.99
51701548--51701763	40	5.7	40	81	12	235	25	21	27	25	1.99
51709435--51709659	40	5.7	40	87	5	271	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51715061--51715092	11	2.9	11	90	0	55	34	34	9	21	1.86
51715155--51715243	30	3.0	31	78	4	94	29	24	16	29	1.97
51717809--51717864	5	10.8	5	76	17	53	76	3	17	1	1.01
51717809--51717864	16	3.6	14	81	15	58	76	3	17	1	1.01
51717981--51718019	18	2.1	19	85	4	53	66	2	23	7	1.30
51720037--51720068	11	2.9	11	100	0	64	34	37	9	18	1.83
51725247--51725271	13	1.9	13	100	0	50	36	16	16	32	1.90
51726531--51726590	23	2.6	23	86	5	86	28	31	30	10	1.89
51735222--51735249	7	4.0	7	100	0	56	28	0	0	71	0.86
51742238--51742461	69	3.3	69	78	1	191	19	21	22	36	1.95
51749356--51749406	25	2.0	25	100	0	102	37	11	15	35	1.84
51750003--51750035	7	4.7	7	100	0	66	15	15	42	27	1.86
51750206--51750241	19	1.9	18	88	5	54	44	2	2	50	1.31
51750999--51751050	21	2.5	21	84	3	70	71	0	3	25	1.03
51751239--51751310	36	2.1	34	82	15	85	27	5	6	59	1.46
51751830--51751881	24	2.2	24	89	0	77	55	9	1	32	1.43
51753831--51753872	21	2.0	21	90	0	66	40	4	9	45	1.58
51754093--51754135	20	2.2	20	91	0	68	39	4	11	44	1.62
51754400--51754469	27	2.6	27	86	4	97	40	8	12	38	1.74
51755563--51755612	24	2.2	22	89	7	73	26	18	18	38	1.93
51759334--51759415	43	1.9	43	89	0	128	30	30	18	20	1.96
51761854--51761903	23	2.2	23	100	0	100	8	30	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51764125--51764245	43	2.8	45	83	5	142	28	15	23	33	1.95
51764713--51764790	33	2.4	33	86	0	102	44	17	17	19	1.87
51766381--51766427	20	2.3	20	88	0	67	29	25	2	42	1.67
51766394--51766453	20	3.0	20	82	0	75	28	23	3	45	1.69
51782861--51782892	10	3.3	10	95	4	57	62	0	6	31	1.20
51782888--51782950	27	2.3	26	76	10	63	50	11	0	38	1.38
51782917--51782946	15	2.0	15	93	0	51	40	10	0	50	1.36
51792421--51792446	13	2.0	13	100	0	52	23	7	23	46	1.78
51797501--51797539	18	2.2	18	100	0	78	23	5	15	56	1.59
51811516--51811733	40	5.5	40	88	4	293	22	23	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345