genome.fa.s6.2.7.7.80.10.50.1000.315.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  315  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106324786--106325040	131	1.9	131	88	2	377	28	18	17	34	1.94
106338415--106338538	60	2.1	60	100	0	248	23	3	14	58	1.50
106338778--106339436	176	3.7	174	87	2	859	30	20	18	30	1.97
106338997--106339085	45	2.0	45	91	4	144	29	20	17	32	1.96
106353373--106353576	45	4.6	44	70	11	139	26	20	24	27	1.99
106353696--106353814	45	2.7	43	81	3	121	31	19	20	29	1.97
106356396--106356631	129	1.8	128	88	0	364	27	19	18	34	1.95
106359440--106359499	30	2.0	30	93	0	102	58	10	3	28	1.46
106362050--106362270	46	4.8	45	80	10	234	27	18	31	23	1.97
106363428--106363465	20	1.9	19	94	5	67	10	44	31	13	1.77
106365143--106365222	30	2.7	28	74	16	81	40	0	0	60	0.97
106365399--106365456	30	1.9	30	86	6	82	34	5	0	60	1.19
106367613--106367647	12	3.0	11	88	12	52	28	0	0	71	0.86
106371226--106371277	14	3.5	15	77	17	56	61	1	1	34	1.18
106379710--106379957	120	2.1	121	93	0	426	27	16	20	35	1.94
106379830--106380109	129	2.2	131	79	5	300	26	17	20	35	1.95
106382022--106382061	22	1.9	20	85	10	53	55	2	2	40	1.27
106383363--106383410	24	2.1	22	84	7	60	41	2	4	52	1.32
106387762--106388090	163	2.0	164	98	1	642	35	13	17	33	1.89
106399033--106399093	30	2.1	30	81	6	72	55	11	0	32	1.36
106410104--106410130	14	1.9	14	100	0	54	44	11	14	29	1.80
106411520--106411580	20	3.0	20	73	15	63	62	1	3	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106411489--106411554	32	2.1	30	83	13	80	59	3	3	34	1.28
106412993--106413042	19	2.5	20	80	6	57	46	0	26	28	1.53
106421765--106421810	3	15.3	3	95	0	83	30	0	2	67	1.03
106422076--106422133	22	2.5	22	73	15	55	39	6	1	51	1.39
106434386--106434925	44	12.6	44	69	13	259	30	19	22	27	1.98
106434386--106434976	212	2.7	215	87	5	874	30	19	22	27	1.98
106434776--106434937	87	1.9	87	84	2	218	29	20	24	25	1.99
106436552--106436591	3	13.3	3	89	0	62	27	0	5	67	1.11
106436548--106436603	15	3.8	15	83	2	60	28	0	5	66	1.14
106441289--106441344	11	4.9	11	85	8	76	35	0	1	62	1.06
106441257--106441350	24	4.2	23	72	16	90	38	0	4	57	1.18
106443159--106443432	46	6.0	46	88	0	352	41	13	24	20	1.89
106446432--106446458	3	9.0	3	100	0	54	33	0	0	66	0.92
106449191--106449216	13	2.0	13	100	0	52	46	0	0	53	1.00
106451985--106452048	34	1.9	33	84	9	85	25	10	12	51	1.72
106453123--106453311	96	2.0	97	85	3	256	25	7	22	43	1.80
106482317--106482512	42	4.6	42	82	5	243	31	15	23	29	1.96
106487612--106487647	18	2.0	18	100	0	72	33	5	11	50	1.61
106491028--106491088	20	3.1	19	81	11	52	55	3	4	36	1.38
106491041--106491088	19	2.5	20	82	3	62	54	2	6	37	1.38
106491041--106491102	20	3.2	20	83	2	72	51	1	8	38	1.41
106491043--106491105	19	3.2	20	82	4	58	52	1	9	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106491830--106491869	4	10.0	4	88	0	62	22	22	0	55	1.44
106494248--106494272	13	1.9	13	100	0	50	64	16	0	20	1.30
106496126--106496421	43	6.9	42	81	5	317	30	24	18	26	1.98
106496133--106496421	128	2.2	129	83	5	345	29	25	18	26	1.98
106496133--106496465	128	2.6	126	79	8	282	29	24	18	27	1.98
106496610--106496670	19	3.2	19	90	4	97	55	26	9	8	1.60
106502393--106502514	9	13.6	9	80	3	147	35	0	18	45	1.56
106502393--106502514	27	4.5	27	82	8	167	35	0	18	45	1.56
106502381--106502514	54	2.5	54	87	2	189	35	0	17	45	1.54
106502415--106502550	36	3.6	36	74	18	132	33	0	19	47	1.49
106504609--106504660	19	2.7	19	93	0	86	25	0	32	42	1.55
106505312--106505606	14	20.7	14	66	14	61	46	30	1	21	1.61
106505575--106505636	22	2.9	21	74	9	63	53	20	1	24	1.55
106505965--106506608	84	7.7	82	73	6	495	30	15	20	33	1.94
106505973--106506684	168	4.2	167	82	3	788	30	15	20	33	1.94
106505973--106506622	335	1.9	336	84	4	855	30	15	20	33	1.93
106507117--106507172	22	2.6	21	81	10	67	48	3	1	46	1.30
106515958--106516009	26	2.0	26	92	0	86	30	13	17	38	1.88
106524110--106524280	46	3.7	46	78	11	197	22	21	26	28	1.99
106526088--106526135	25	1.9	25	91	0	78	52	8	8	31	1.61
106526363--106526631	22	12.6	22	66	25	75	57	5	2	33	1.35
106526403--106526436	16	2.1	16	94	0	59	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106526419--106526498	24	3.4	24	83	8	94	56	5	2	36	1.35
106526432--106526502	35	2.0	35	81	5	81	54	7	2	35	1.42
106526538--106526608	19	3.4	21	75	11	65	59	5	0	35	1.21
106526549--106526589	17	2.4	18	88	8	59	60	4	0	34	1.18
106526591--106526629	3	12.7	3	94	5	69	64	0	0	35	0.94
106526747--106526997	124	2.0	126	83	10	325	58	5	5	29	1.46
106526957--106526995	12	3.3	12	85	3	53	51	2	7	38	1.44
106533617--106533682	26	2.5	27	82	7	73	54	4	0	40	1.21
106534528--106534591	31	2.1	31	90	0	101	34	4	10	50	1.59
106534539--106534605	31	2.3	29	85	10	84	31	5	10	52	1.60
106535684--106535738	25	2.2	25	77	6	58	14	16	0	69	1.20
106537141--106537213	19	3.9	19	92	7	132	38	10	15	35	1.82
106537192--106537248	22	2.7	21	86	2	69	36	5	17	40	1.72
106537205--106537248	21	2.0	22	86	4	63	36	4	15	43	1.68
106537504--106537537	18	1.9	17	88	5	50	29	0	0	70	0.87
106545008--106545038	16	1.9	16	100	0	62	35	25	6	32	1.82
106546920--106547268	78	4.5	78	93	2	560	32	18	24	24	1.97
106547208--106547436	45	5.1	45	75	10	216	31	16	26	25	1.96
106547787--106547839	17	2.9	18	86	8	81	37	11	15	35	1.83
106548131--106548167	18	2.1	18	89	0	56	21	0	5	72	1.04
106548980--106549177	98	2.0	98	100	0	396	31	21	13	33	1.91
106549496--106549559	31	2.1	31	82	5	76	34	10	12	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106551123--106551188	26	2.5	27	82	7	73	54	4	0	40	1.21
106552034--106552097	31	2.1	31	90	0	101	34	4	10	50	1.59
106552045--106552111	31	2.3	29	85	10	84	31	5	10	52	1.60
106556629--106556668	9	4.6	9	84	6	55	72	0	0	27	0.85
106557024--106557089	26	2.5	27	82	7	73	54	4	0	40	1.21
106557943--106558008	31	2.1	31	91	0	105	33	6	12	48	1.65
106557956--106558022	31	2.3	29	85	10	84	31	5	10	52	1.60
106560882--106560939	19	3.4	19	64	26	56	56	13	5	24	1.57
106560881--106560944	32	2.0	32	100	0	128	56	12	6	25	1.59
106564285--106564388	38	2.7	38	80	0	109	25	22	25	27	2.00
106564379--106564570	43	4.5	43	96	0	330	11	25	31	31	1.92
106564535--106564597	27	2.3	27	97	0	117	11	25	30	33	1.90
106564492--106564640	70	2.1	70	93	0	253	12	24	31	31	1.92
106564449--106564683	113	2.1	113	92	0	389	11	24	32	31	1.91
106564406--106564689	156	1.8	156	93	0	496	11	24	32	30	1.92
106564562--106564686	43	2.9	43	93	0	214	11	24	32	32	1.90
106567039--106567091	15	3.6	15	78	16	58	73	3	5	16	1.17
106567067--106567167	5	19.4	5	73	15	62	73	3	6	15	1.20
106567127--106567167	14	2.8	14	92	7	64	80	0	0	19	0.71
106570956--106570988	18	1.9	17	88	11	50	60	6	9	24	1.49
106575481--106575708	46	5.0	46	90	1	305	40	14	23	21	1.90
106576748--106576907	56	2.9	56	82	5	173	27	15	24	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106577690--106578023	165	2.0	165	98	1	652	24	6	23	45	1.76
106587252--106587297	17	3.0	15	82	14	58	15	13	0	71	1.14
106587253--106587308	24	2.2	26	87	6	80	14	14	0	71	1.15
106588877--106588946	20	3.4	20	80	9	79	55	4	0	40	1.19
106588887--106589002	19	6.3	19	76	9	89	54	2	0	43	1.14
106588887--106588998	39	2.7	44	80	14	114	55	2	0	41	1.14
106588915--106588998	44	1.9	43	86	11	118	53	1	0	45	1.08
106588919--106589003	9	9.4	9	72	16	61	51	1	0	47	1.08
106589026--106589073	23	2.1	23	100	0	96	43	8	4	43	1.53
106590768--106590822	22	2.7	21	73	18	53	7	10	16	65	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345