Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  335  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111746237--111746683
205
2.2
205
91
0
723
31
9
14
44
1.77
111746649--111746714
31
2.1
32
85
2
89
36
3
16
43
1.64
111746485--111746853
172
2.2
172
87
2
510
28
11
16
42
1.83
111754072--111754316
122
2.0
122
93
1
420
38
11
6
43
1.67
111758015--111758107
46
2.0
46
97
0
177
21
7
19
51
1.71
111759917--111759949
16
2.1
16
100
0
66
51
0
6
42
1.26
111761321--111761458
70
2.0
70
89
0
213
38
9
20
31
1.84
111761271--111761704
154
2.8
153
86
4
546
40
8
18
32
1.81
111761561--111761738
92
1.9
93
89
3
279
41
5
16
36
1.72
111761887--111762242
109
3.3
109
86
3
459
28
13
17
40
1.87
111771353--111771381
15
1.9
15
100
0
58
51
0
48
0
1.00
111771356--111771390
15
2.3
15
90
0
52
54
0
42
2
1.15
111779364--111779519
81
1.9
81
90
5
253
37
10
12
39
1.78
111783605--111783661
22
2.7
19
82
15
60
26
1
1
70
1.07
111783623--111783671
20
2.5
20
76
3
55
26
6
0
67
1.14
111783900--111783939
19
2.0
19
85
9
53
55
7
0
37
1.29
111785621--111785665
18
2.4
19
81
7
56
28
0
6
64
1.19
111786279--111786337
31
1.9
31
85
0
82
27
20
16
35
1.94
111791972--111792014
13
3.3
13
80
6
52
18
0
6
74
1.04
111792460--111792498
14
2.8
14
88
0
60
46
28
0
25
1.53
111792923--111792970
22
2.1
22
84
3
60
25
0
25
50
1.50
111793010--111793122
41
2.8
41
87
2
165
22
21
21
35
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111794090--111794131
21
2.0
22
90
4
68
45
0
0
54
0.99
111807061--111807085
8
3.1
8
100
0
50
88
0
0
12
0.53
111812154--111812213
28
2.1
28
81
9
68
41
0
3
55
1.16
111816004--111816196
95
2.0
94
88
1
287
22
15
18
44
1.87
111818403--111818460
20
2.9
20
78
0
71
25
5
20
48
1.70
111819152--111819201
23
2.2
23
100
0
100
38
20
18
24
1.93
111832984--111833046
3
21.7
3
83
3
76
31
4
1
61
1.26
111833000--111833041
22
1.9
22
95
0
75
28
4
2
64
1.26
111833050--111833134
25
3.3
26
74
6
75
20
8
3
68
1.31
111834298--111834345
22
2.1
23
84
3
62
60
6
0
33
1.22
111834324--111834416
26
3.7
25
75
4
71
58
3
6
32
1.40
111834556--111834624
23
3.1
23
72
18
65
62
0
10
27
1.27
111834551--111834652
14
7.1
14
71
18
66
63
0
8
26
1.30
111834551--111834652
29
3.5
28
75
18
77
63
0
8
26
1.30
111839158--111839322
3
55.3
3
73
7
131
29
7
0
63
1.23
111839159--111839259
40
2.4
41
82
9
116
30
8
0
60
1.27
111840854--111840970
46
2.6
44
82
8
121
29
23
18
28
1.98
111841037--111841989
44
21.7
44
69
7
434
24
22
19
33
1.97
111840985--111841148
89
1.9
88
87
3
240
25
23
20
31
1.98
111841129--111841989
88
9.8
88
86
1
1107
24
22
19
33
1.97
111840992--111841808
132
6.2
132
73
7
654
24
22
19
34
1.97
111843023--111843157
39
3.4
39
74
11
116
28
27
20
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111843941--111843968
5
5.6
5
100
0
56
60
0
0
39
0.97
111850010--111850144
39
3.4
39
74
11
116
28
27
20
23
1.99
111850931--111850958
5
5.6
5
100
0
56
60
0
0
39
0.97
111854586--111854616
14
2.2
14
94
0
53
19
6
12
61
1.53
111860295--111860324
13
2.2
13
94
5
51
86
0
13
0
0.57
111864831--111864879
21
2.4
21
90
6
75
30
16
12
40
1.85
111864964--111865032
28
2.6
27
77
11
79
40
2
0
56
1.14
111864982--111865040
28
2.2
26
84
6
73
45
0
0
54
0.99
111865236--111865271
11
3.4
11
88
3
56
0
13
0
86
0.58
111865236--111865271
16
2.2
16
95
0
63
0
13
0
86
0.58
111867832--111867925
47
2.0
47
95
0
170
37
20
10
31
1.87
111875537--111876518
245
4.0
245
96
0
1779
33
13
19
33
1.91
111885584--111885779
94
2.1
94
87
2
277
27
18
28
26
1.98
111885807--111885904
48
2.0
48
100
0
196
23
22
14
39
1.90
111885884--111885913
11
2.6
11
94
5
51
26
3
0
70
1.03
111886134--111886176
22
2.0
22
85
0
59
58
11
11
18
1.63
111894409--111894434
6
4.3
6
100
0
52
0
0
50
50
1.00
111897767--111897798
5
6.6
5
96
3
57
18
0
0
81
0.70
111902207--111902244
5
7.8
5
94
5
69
18
0
0
81
0.69
111902205--111902244
14
2.8
14
88
3
62
17
0
0
82
0.67
111902557--111902600
21
2.1
21
82
0
52
31
4
6
56
1.46
111902997--111903021
13
1.9
13
100
0
50
56
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111903165--111903205
20
2.0
20
95
0
73
46
0
12
41
1.41
111903438--111903496
26
2.4
23
75
13
55
45
11
8
33
1.71
111906161--111906191
15
2.1
15
100
0
62
25
35
12
25
1.92
111923313--111923340
13
2.2
13
100
0
56
21
25
0
53
1.46
111924380--111924404
9
2.8
9
100
0
50
24
0
12
64
1.27
111926844--111926890
22
2.1
23
88
4
69
61
6
0
31
1.21
111926846--111926998
25
6.2
24
70
13
89
56
2
7
33
1.41
111927103--111927148
15
2.9
15
87
6
56
65
0
6
28
1.17
111927118--111927175
15
4.0
14
78
10
55
65
0
8
25
1.21
111927531--111927615
32
2.7
32
94
3
147
69
3
10
16
1.31
111929418--111929468
9
5.2
9
76
23
50
33
0
1
64
1.05
111952521--111952558
20
1.9
20
89
10
60
63
0
13
23
1.30
111955220--111955267
25
1.9
25
87
8
71
25
2
4
68
1.18
111956036--111956118
43
1.9
43
95
0
148
33
10
9
45
1.72
111959495--111959535
20
2.0
22
85
9
59
31
9
2
56
1.45
111961056--111961117
27
2.4
25
79
10
70
41
1
1
54
1.19
111961615--111961662
20
2.4
20
79
6
53
47
0
4
47
1.21
111961629--111961678
18
2.6
19
84
12
59
46
0
6
48
1.27
111961625--111961674
20
2.4
21
75
18
52
42
0
6
52
1.26
111961629--111961687
19
3.1
18
79
16
57
44
0
6
49
1.29
111961667--111961744
28
2.8
28
78
18
81
57
0
5
37
1.21
111961826--111961874
21
2.2
22
85
7
64
42
2
0
55
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111961904--111961949
14
3.4
14
77
14
51
23
2
2
71
1.08
111962176--111962229
21
2.6
21
79
5
56
25
1
11
61
1.40
111963057--111963082
9
2.9
9
100
0
52
57
23
0
19
1.40
111966065--111966101
18
2.1
18
90
10
58
0
18
2
78
0.87
111972270--111972577
129
2.4
129
83
1
384
31
14
16
36
1.90
111974330--111974364
17
2.1
17
100
0
70
22
0
17
60
1.37
111974534--111974572
16
2.7
14
88
11
53
41
0
2
56
1.13
111975160--111975210
26
1.9
27
84
4
68
62
7
3
25
1.40
111976346--111976386
12
3.3
13
80
10
50
17
21
14
46
1.84
111978778--111978816
21
2.0
20
85
10
53
46
12
12
28
1.79
111986623--111986656
4
8.8
4
93
6
61
52
0
0
47
1.00
111988864--111988896
14
2.4
14
90
10
50
69
0
0
30
0.88
111990735--111990833
49
2.0
49
100
0
198
36
10
20
33
1.86
111991433--111991555
59
2.0
60
81
3
140
44
8
9
37
1.67
111992576--111992658
41
2.0
41
97
0
157
30
14
18
37
1.90
111995146--111995219
22
3.1
25
64
25
61
0
22
10
66
1.23
111995118--111995219
45
2.2
45
86
8
136
0
26
8
64
1.22
111996463--111996496
13
2.6
13
100
0
68
44
5
23
26
1.76
111996882--111996934
25
2.1
25
82
10
63
33
3
1
60
1.26
111997735--111998118
191
2.0
192
95
0
689
29
20
14
35
1.92
112004400--112004456
27
2.1
28
83
9
73
31
35
12
21
1.90
112005454--112005545
41
2.2
41
90
7
143
53
4
0
42
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112008709--112008831
63
1.9
64
81
1
149
31
13
12
42
1.82
112014195--112014319
18
6.9
18
80
0
151
34
14
21
29
1.93
112014195--112014319
36
3.5
36
88
0
178
34
14
21
29
1.93
112014195--112014319
54
2.3
54
85
0
169
34
14
21
29
1.93
112016577--112016610
16
2.2
16
89
5
52
38
0
5
55
1.24
112017888--112017960
29
2.5
29
78
12
78
21
2
13
61
1.45
112020210--112020292
22
3.5
24
75
17
68
53
2
3
40
1.32
112020399--112020619
120
1.9
120
82
10
283
56
5
5
32
1.47
112020598--112020631
3
11.3
3
100
0
68
67
0
0
32
0.91
112021109--112021144
11
3.2
12
88
11
58
47
0
52
0
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345