Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  38  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10825070--10825105
18
1.9
18
88
5
54
58
0
0
41
0.98
10825096--10825151
22
2.6
22
83
5
62
51
0
0
48
1.00
10827097--10827179
27
3.1
26
76
8
87
51
4
9
33
1.56
10827485--10827517
17
1.9
17
93
0
57
54
9
3
33
1.47
10827874--10827942
3
22.3
3
72
11
50
65
4
4
26
1.30
10827898--10827936
15
2.5
15
91
4
60
69
5
2
23
1.21
10828445--10828484
17
2.3
18
86
4
55
10
50
30
10
1.69
10829446--10829499
3
19.0
3
75
17
53
37
0
1
61
1.07
10829615--10829654
16
2.5
16
91
0
62
37
0
2
60
1.11
10831196--10831246
25
2.0
25
100
0
102
43
0
9
47
1.36
10831295--10831336
18
2.3
18
83
4
57
61
0
38
0
0.96
10832576--10832707
18
7.4
17
71
10
86
37
16
14
31
1.89
10832569--10832677
54
2.0
54
85
0
146
36
19
14
29
1.91
10832576--10832675
36
2.8
35
77
8
103
39
17
14
30
1.88
10833703--10833748
20
2.3
20
92
3
76
26
17
30
26
1.97
10838118--10838151
12
2.8
12
83
16
52
41
0
5
52
1.25
10838887--10838926
17
2.3
19
79
16
50
47
0
15
37
1.45
10839536--10839656
18
6.8
18
81
4
120
38
14
14
32
1.87
10839536--10839684
36
4.2
36
78
8
153
36
14
15
33
1.88
10839552--10839688
54
2.6
54
81
2
170
36
14
14
34
1.87
10840991--10841032
21
2.0
21
90
0
66
21
26
21
30
1.98
10846976--10847001
13
2.0
13
100
0
52
69
7
0
23
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10851988--10852362
41
9.2
41
87
0
401
33
24
16
26
1.96
10851972--10852362
123
3.2
122
83
2
471
31
23
17
26
1.97
10852888--10852973
41
2.1
42
83
10
108
27
5
25
40
1.78
10852897--10852982
43
2.0
43
84
4
113
26
8
27
37
1.85
10853243--10853281
13
3.0
13
96
0
69
43
7
2
46
1.46
10854145--10854228
40
2.1
40
82
6
98
42
15
19
22
1.88
10858158--10858594
241
1.8
243
93
2
772
33
18
13
34
1.90
10858710--10858837
9
13.6
9
76
9
121
46
21
0
31
1.57
10858727--10858804
39
2.0
39
97
0
147
46
21
0
32
1.52
10858723--10858835
57
2.0
57
89
0
172
46
23
0
30
1.58
10864727--10864793
31
2.2
31
83
0
80
17
4
17
59
1.53
10864871--10864987
43
2.7
42
90
3
189
23
30
18
27
1.98
10866424--10866485
3
22.0
3
78
15
62
67
0
30
1
1.00
10866424--10866485
17
3.5
17
89
8
97
67
0
30
1
1.00
10867545--10867602
23
2.6
23
91
5
93
31
27
15
25
1.96
10886471--10886534
27
2.4
27
78
5
67
15
17
32
34
1.91
10890506--10890537
16
2.0
16
93
0
55
46
0
15
37
1.46
10891074--10891098
13
1.9
13
100
0
50
52
8
8
32
1.60
10892472--10892525
19
2.8
19
85
0
81
31
29
16
22
1.96
10892515--10892586
19
3.8
20
75
14
62
25
20
22
31
1.98
10904511--10904559
24
2.0
24
96
0
89
26
4
14
55
1.57
10913174--10913221
20
2.4
20
86
6
62
39
14
2
43
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10913194--10913261
31
2.2
31
80
14
79
47
8
1
42
1.43
10913429--10913497
30
2.3
31
82
2
86
56
2
2
37
1.29
10936959--10937109
43
3.5
43
77
5
144
29
15
20
35
1.93
10939196--10939367
93
1.8
93
93
0
299
27
28
22
21
1.99
10939189--10939364
46
3.8
46
78
12
198
28
28
21
21
1.98
10939240--10939383
46
3.1
44
75
15
132
29
27
20
22
1.99
10943892--10943941
9
5.6
9
82
0
64
46
18
8
28
1.77
10943962--10944008
6
7.5
6
81
9
58
17
0
6
76
0.98
10944239--10944321
30
2.8
29
85
7
103
27
25
21
25
1.99
10944265--10944321
18
3.5
17
73
26
61
24
24
24
26
2.00
10950191--10950223
12
2.6
13
90
4
50
0
48
0
51
1.00
10950200--10950248
19
2.7
18
80
3
62
0
38
0
61
0.96
10957015--10957176
43
3.8
41
77
5
119
30
12
23
33
1.91
10962310--10962345
6
5.8
6
96
3
63
16
30
0
52
1.44
10965554--10965661
26
4.2
26
93
0
189
37
23
7
32
1.82
10966976--10967161
90
2.1
90
96
0
345
30
9
24
36
1.86
10968480--10968569
45
2.0
45
100
0
180
13
22
24
40
1.90
10969214--10969246
14
2.4
14
94
0
57
36
0
12
51
1.39
10973935--10973968
10
3.2
10
84
15
50
85
0
8
5
0.75
10974556--10974635
1
80.0
1
77
0
70
87
1
2
8
0.69
10974538--10974632
6
15.5
6
77
13
70
84
3
2
10
0.83
10974538--10974635
12
7.9
12
76
16
85
84
3
2
10
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10974556--10974635
23
3.3
24
82
5
99
87
1
2
8
0.69
10975728--10975851
64
1.9
64
91
0
203
30
17
15
36
1.91
10975963--10976142
93
1.9
93
82
6
227
30
17
24
27
1.97
10976066--10976269
44
4.7
44
71
5
137
27
20
24
27
1.99
10976065--10976296
44
5.3
44
67
12
129
28
20
22
28
1.99
10976170--10976588
177
2.4
176
82
2
464
31
17
24
26
1.97
10978109--10978351
122
2.0
122
82
4
294
34
9
4
52
1.53
10986259--10986283
13
1.9
13
100
0
50
32
4
24
40
1.73
10987387--10987546
42
3.8
43
75
9
159
26
13
28
31
1.94
10988833--10988890
28
2.0
29
96
3
109
48
10
10
31
1.71
10989524--10989555
11
2.9
11
100
0
64
43
18
0
37
1.51
10989690--10989821
47
2.8
45
81
11
149
31
9
5
53
1.56
10994903--10995160
126
2.0
127
90
2
412
28
20
16
34
1.94
10995860--10995911
22
2.4
22
90
3
79
48
32
0
19
1.49
10996204--10996280
9
8.6
9
74
5
66
48
16
6
28
1.71
10996204--10996280
27
2.8
26
79
11
75
48
16
6
28
1.71
10996300--10996352
6
8.5
6
83
8
70
16
1
3
77
1.01
10996377--10996401
13
1.9
13
100
0
50
12
0
48
40
1.40
10996378--10996415
18
2.1
18
95
0
67
7
2
47
42
1.46
10996897--10996938
13
3.3
13
75
18
52
47
0
14
38
1.44
10996885--10996941
25
2.3
25
96
0
105
45
0
15
38
1.47
10999687--10999782
27
3.4
27
70
13
70
22
18
11
46
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10999731--10999788
27
2.2
26
79
11
64
22
15
12
50
1.77
10999923--11000002
33
2.5
31
91
8
124
5
30
2
62
1.29
11000605--11000652
25
1.9
25
95
0
87
60
10
4
25
1.47
11005613--11005654
21
2.0
21
100
0
84
33
9
19
38
1.84
11008210--11008244
17
2.1
17
89
5
54
42
0
14
42
1.45
11016720--11016749
14
2.1
14
93
0
51
16
0
36
46
1.47
11020883--11020912
14
2.1
14
93
0
51
16
0
36
46
1.47
11023214--11023243
14
2.1
14
93
0
51
16
0
36
46
1.47
11030666--11030703
14
2.7
14
88
8
51
42
2
13
42
1.57
11035295--11035325
16
1.9
16
93
0
53
35
22
0
41
1.54
11035292--11035331
20
2.0
20
85
0
53
37
22
0
40
1.54
11035522--11035777
55
4.8
53
81
8
231
21
25
17
35
1.95
11035569--11035769
108
1.8
110
88
4
309
23
25
16
34
1.96
11038257--11038323
8
8.4
8
93
0
98
74
2
22
0
0.95
11042370--11042488
36
3.3
36
95
0
202
43
8
20
27
1.80
11042375--11042435
21
3.2
21
60
26
53
40
6
21
31
1.78
11045131--11045169
16
2.4
17
83
12
55
58
10
0
30
1.31
11046362--11046443
36
2.3
35
87
8
112
43
9
23
23
1.83
11049405--11049612
77
2.7
76
79
5
204
34
12
15
37
1.85
11052516--11052549
13
2.7
13
90
4
52
61
0
2
35
1.11
11052652--11052699
23
2.0
24
88
11
73
18
4
16
60
1.51
11052777--11052849
16
4.5
17
74
16
66
41
0
1
57
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11055856--11055900
9
5.0
9
83
0
54
64
4
0
31
1.13
11057012--11057057
19
2.4
19
85
10
58
43
2
2
52
1.25
11058378--11058419
18
2.2
19
87
12
59
35
0
0
64
0.94
11073485--11073522
8
4.5
8
93
6
58
57
0
0
42
0.98
11073481--11073522
16
2.4
18
88
11
70
57
0
0
42
0.99
11078668--11078696
15
1.9
15
100
0
58
41
0
0
58
0.98
11084663--11084699
19
1.9
19
88
0
56
45
0
2
51
1.15
11085169--11085216
21
2.3
21
85
7
62
79
8
8
4
1.06
11085649--11085673
11
2.3
11
100
0
50
52
0
20
28
1.47
11086017--11086138
64
1.9
64
86
5
174
39
0
22
38
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345