genome.fa.s6.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  125  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42164186--42164254	28	2.5	27	74	6	66	63	1	5	28	1.26
42171800--42171841	21	2.0	21	85	0	57	23	11	28	35	1.91
42178358--42178507	43	3.5	43	75	8	153	26	12	24	36	1.91
42188802--42188852	26	1.9	27	92	4	86	27	33	25	13	1.94
42188668--42188926	101	2.6	102	89	3	398	30	29	20	18	1.97
42195635--42195901	104	2.6	104	92	1	437	30	31	19	18	1.96
42205947--42206157	94	2.2	94	96	1	388	27	27	17	27	1.97
42211639--42211711	37	2.0	37	100	0	146	27	16	17	38	1.91
42222087--42222307	112	2.0	112	98	0	424	43	13	10	32	1.78
42224399--42224493	35	2.7	35	86	0	127	36	16	20	26	1.93
42227420--42227466	22	2.1	22	88	0	67	68	8	2	21	1.27
42230810--42230886	21	3.4	21	73	16	82	19	18	3	58	1.54
42230808--42230881	24	3.2	23	70	22	73	17	16	4	62	1.48
42236090--42236405	40	7.7	43	78	8	302	22	20	24	31	1.98
42236090--42236405	82	3.9	82	89	3	458	22	20	24	31	1.98
42236558--42238013	132	11.1	132	94	0	2413	29	26	16	27	1.97
42236587--42238263	44	38.3	42	70	13	786	29	26	16	27	1.97
42243299--42243830	266	2.0	266	96	0	992	23	24	18	33	1.97
42247018--42247049	15	2.1	15	100	0	64	18	18	56	6	1.62
42247959--42248018	30	2.0	30	96	0	111	40	6	11	41	1.68
42255541--42255598	29	2.0	29	100	0	116	37	24	3	34	1.72
42260599--42260728	67	1.9	67	86	6	183	31	29	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42260800--42260936	58	2.4	58	86	2	204	25	27	19	27	1.99
42264018--42264082	30	2.2	30	88	5	96	29	4	23	43	1.74
42264016--42264137	28	4.2	28	79	12	104	36	4	19	39	1.74
42266469--42266537	24	2.9	22	74	20	59	72	4	20	2	1.15
42266469--42266537	15	4.5	14	74	23	50	72	4	20	2	1.15
42267232--42267279	15	3.2	15	80	11	62	37	0	12	50	1.41
42267198--42267255	24	2.3	26	77	19	70	31	0	20	48	1.50
42267413--42267549	40	3.5	38	78	7	141	29	18	21	29	1.97
42271275--42271324	23	2.2	23	85	7	66	34	20	0	46	1.51
42279415--42279478	10	6.9	9	73	16	51	73	3	21	1	1.06
42279415--42279477	14	4.5	13	74	16	56	73	3	22	1	1.07
42279406--42279473	33	2.1	33	83	10	86	73	4	19	2	1.13
42280131--42280188	24	2.3	26	77	19	70	31	0	20	48	1.50
42280347--42280485	40	3.5	40	76	6	131	27	17	23	32	1.96
42283384--42283439	27	2.1	27	82	0	67	32	1	5	60	1.29
42293761--42293826	13	5.1	13	71	0	51	34	6	24	34	1.80
42300192--42300256	32	2.0	32	100	0	130	36	15	27	20	1.92
42304086--42304118	16	2.1	16	94	5	59	27	0	42	30	1.56
42305946--42305982	6	6.2	6	100	0	74	35	0	0	64	0.94
42308939--42308975	18	2.1	18	89	0	56	10	62	8	18	1.52
42310511--42310552	22	2.0	20	86	9	57	35	0	4	59	1.19
42311571--42311950	126	3.0	126	89	1	550	34	18	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42319833--42320180	181	1.9	179	88	2	502	42	16	18	23	1.89
42325749--42325809	30	2.0	30	83	0	77	31	22	8	37	1.84
42330609--42330657	21	2.4	21	93	3	82	36	10	12	40	1.77
42338833--42338948	55	2.1	55	80	3	126	20	25	34	19	1.96
42347194--42348547	676	2.0	679	97	0	2552	38	11	29	20	1.87
42350717--42350775	28	2.1	28	100	0	118	35	15	10	38	1.81
42350866--42350962	39	2.5	39	81	5	108	25	29	24	19	1.98
42350899--42351050	78	1.9	78	81	5	182	26	28	21	22	1.99
42350933--42351054	39	3.1	39	90	0	190	27	29	22	21	1.99
42353348--42353464	61	1.9	62	94	1	209	33	17	26	23	1.96
42353409--42353548	72	1.9	73	89	7	221	32	18	22	27	1.97
42359861--42360282	146	2.9	149	80	5	469	32	11	29	27	1.91
42359861--42360390	149	3.6	148	78	4	505	31	11	28	28	1.92
42361961--42362048	33	2.7	33	79	10	101	31	11	23	32	1.90
42369538--42369660	33	3.9	31	75	12	79	32	13	22	31	1.92
42369554--42369641	33	2.7	33	79	10	110	31	10	25	32	1.89
42373459--42373666	46	4.5	46	72	12	149	27	18	30	23	1.97
42373597--42373710	48	2.5	45	84	8	142	27	18	29	24	1.98
42379591--42379774	94	2.0	94	81	2	217	33	16	26	23	1.95
42387521--42387593	23	3.2	23	82	7	85	28	16	30	24	1.96
42398790--42398867	39	2.0	40	92	2	131	24	19	10	46	1.81
42399785--42399817	13	2.5	13	95	0	57	15	42	18	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42407203--42407424	40	5.6	40	92	1	349	22	24	26	26	2.00
42411440--42411879	217	2.0	217	100	0	880	28	22	12	36	1.91
42412637--42412923	50	5.7	50	77	4	256	26	16	26	30	1.97
42412680--42412869	101	1.9	101	87	0	281	26	18	25	28	1.98
42417901--42418027	47	2.7	46	82	7	157	25	29	17	28	1.97
42428690--42428863	44	3.9	44	80	8	215	28	29	20	21	1.98
42428698--42428866	92	1.8	91	93	1	293	27	30	20	21	1.98
42433678--42433849	93	1.8	93	92	0	290	27	29	20	21	1.98
42433670--42433839	46	3.7	45	78	10	200	28	29	20	21	1.98
42440819--42440848	14	2.2	14	94	5	53	16	0	0	83	0.65
42448172--42448215	22	2.0	22	100	0	88	27	18	9	45	1.79
42454873--42454930	29	2.0	29	86	0	80	29	39	17	13	1.88
42454832--42454967	70	1.9	70	82	2	166	25	36	21	17	1.95
42458089--42458118	6	5.0	6	100	0	60	0	16	0	83	0.65
42466473--42466694	40	5.6	40	91	1	340	27	27	23	22	2.00
42468987--42469059	23	3.0	24	82	8	76	30	21	23	24	1.99
42482318--42482432	31	3.7	31	92	1	187	23	25	17	33	1.96
42484953--42485090	23	6.0	23	70	15	79	36	16	21	25	1.94
42489859--42490054	10	21.7	9	72	12	111	40	0	59	0	1.02
42489874--42490476	4	154.2	4	70	8	249	39	0	57	1	1.14
42489928--42490476	14	40.6	14	70	15	122	39	0	58	1	1.15
42489872--42490476	26	23.8	25	67	20	130	39	0	57	1	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42492013--42492258	49	4.9	50	84	2	325	25	18	27	28	1.98
42492118--42492201	28	3.2	28	65	25	83	23	16	29	29	1.96
42493532--42493622	6	15.7	6	79	6	98	39	0	60	0	0.97
42493532--42493654	29	4.2	29	78	8	115	40	0	58	0	1.04
42496482--42496533	22	2.3	23	84	12	65	46	25	5	23	1.74
42500124--42500177	24	2.2	24	80	6	65	33	14	25	25	1.95
42509381--42509651	46	5.8	46	84	10	370	20	20	29	29	1.98
42515806--42516026	46	4.8	46	81	10	263	21	19	28	30	1.98
42520457--42520519	23	2.7	23	80	7	74	33	17	25	23	1.96
42521028--42521079	24	2.2	24	89	0	77	51	9	3	34	1.53
42521170--42521228	29	2.0	29	86	0	82	30	30	11	27	1.92
42530052--42530140	40	2.2	41	86	6	119	53	6	4	34	1.47
42546648--42546672	13	1.9	13	100	0	50	16	24	40	20	1.91
42554669--42554702	16	2.1	17	88	5	52	58	5	0	35	1.22
42557030--42557119	38	2.4	38	85	9	114	32	30	5	32	1.81
42558037--42558131	23	4.2	23	76	2	93	9	14	27	48	1.75
42558025--42558158	68	2.0	69	86	1	189	11	14	26	47	1.78
42559525--42559571	19	2.4	18	83	13	58	38	12	6	42	1.69
42562098--42562161	33	1.9	33	87	0	92	23	26	28	21	1.99
42562300--42562367	27	2.5	27	85	4	93	35	20	23	20	1.96
42571838--42571898	30	2.0	30	83	0	77	31	22	8	37	1.84
42571998--42572023	13	2.0	13	100	0	52	53	0	7	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42580176--42580222	19	2.3	20	82	10	60	36	0	14	48	1.44
42580570--42580813	50	4.9	50	78	3	265	25	17	26	30	1.97
42580571--42580752	101	1.8	101	88	0	283	25	16	25	31	1.96
42580571--42580799	101	2.3	100	84	2	280	25	16	26	31	1.97
42581013--42581044	16	2.0	16	93	0	55	46	0	18	34	1.49
42583893--42584047	44	3.5	44	81	6	181	25	14	27	32	1.95
42584518--42584570	23	2.3	23	74	6	54	16	3	28	50	1.62
42587572--42587607	16	2.2	16	95	0	63	41	0	8	50	1.33
42591000--42591766	387	2.0	387	96	0	1408	21	20	19	37	1.94
42593313--42593354	22	2.1	19	86	13	57	52	0	2	45	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345