genome.fa.s6.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  121  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40567535--40567564	14	2.1	15	93	6	53	26	3	20	50	1.64
40575890--40576043	43	3.7	41	80	8	150	25	18	25	29	1.98
40578660--40578739	40	2.0	40	95	0	142	48	16	15	20	1.81
40580475--40580682	55	3.9	54	83	4	240	35	18	24	22	1.95
40582185--40582315	65	2.0	65	100	0	262	38	19	19	21	1.93
40591410--40591563	43	3.7	41	78	6	141	24	15	25	34	1.95
40591410--40591527	41	2.8	42	80	3	132	24	13	24	37	1.92
40593178--40593354	48	3.7	48	82	6	223	21	28	19	29	1.98
40593177--40593357	96	1.9	96	91	2	301	21	28	19	29	1.98
40593537--40593602	25	2.7	24	81	4	87	42	25	10	21	1.85
40598837--40598866	15	1.9	16	93	6	53	53	6	23	16	1.66
40605492--40605635	55	2.6	55	82	0	171	27	32	25	13	1.94
40614394--40614525	65	2.0	65	97	0	246	33	12	19	34	1.89
40614860--40614934	30	2.5	30	86	0	105	12	30	36	21	1.90
40622412--40622446	18	1.9	18	88	0	52	51	25	14	8	1.70
40627806--40627836	16	1.9	16	93	0	53	38	22	22	16	1.92
40628407--40628457	15	3.4	15	78	8	50	27	1	1	68	1.11
40628407--40628490	22	3.8	22	76	12	75	27	1	2	69	1.09
40628429--40628460	15	2.1	15	94	0	55	28	0	0	71	0.86
40629242--40629289	21	2.3	21	85	0	60	35	35	4	25	1.75
40629344--40629388	14	3.2	14	87	0	63	48	28	0	22	1.50
40629533--40629581	21	2.3	21	86	10	64	38	44	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40629559--40629606	25	1.9	25	83	8	62	37	43	0	18	1.51
40629587--40629621	15	2.4	15	90	4	54	45	34	0	20	1.51
40629582--40629626	22	2.0	22	82	0	54	44	33	0	22	1.53
40629951--40630059	41	2.7	39	79	12	123	28	23	22	25	1.99
40629953--40630287	156	2.2	155	86	1	465	32	21	18	27	1.97
40633203--40633259	29	2.0	28	83	12	73	33	5	26	35	1.79
40633675--40633834	86	1.9	86	84	6	218	28	20	23	27	1.99
40641068--40641345	138	2.0	138	100	0	556	30	20	15	33	1.94
40641904--40641981	34	2.3	35	88	2	113	28	19	21	30	1.97
40645160--40645254	27	3.5	27	82	5	111	42	17	18	21	1.90
40649177--40649225	26	1.9	26	87	4	73	30	16	12	40	1.85
40649177--40649232	25	2.2	26	83	3	69	30	16	10	42	1.82
40650893--40651140	27	9.2	27	83	3	268	27	21	10	41	1.85
40651145--40651340	54	3.6	54	84	2	250	36	18	18	26	1.94
40651145--40651338	81	2.4	81	85	1	246	36	18	19	26	1.94
40651153--40651340	27	7.0	27	86	0	223	35	19	19	25	1.95
40652797--40652969	93	1.9	93	87	0	256	22	20	28	27	1.99
40654319--40654401	27	3.1	26	87	5	112	19	21	21	37	1.94
40654712--40654785	27	2.8	27	85	6	89	17	24	21	36	1.95
40654928--40654986	6	9.8	6	82	14	77	20	15	13	50	1.77
40654903--40654981	30	2.6	31	88	6	108	21	16	12	49	1.79
40656327--40656360	17	2.0	17	100	0	68	35	17	35	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40657046--40657130	42	2.0	42	100	0	170	32	20	25	21	1.97
40659958--40660172	45	5.0	44	83	7	219	25	21	27	25	1.99
40667700--40667861	45	3.6	45	87	3	222	22	22	28	27	1.99
40676350--40676387	19	2.0	19	90	10	60	47	5	0	47	1.24
40676469--40676500	12	2.6	13	90	9	50	50	0	0	50	1.00
40676471--40676510	13	2.8	14	85	14	55	47	0	0	52	1.00
40681262--40681541	48	5.8	48	89	3	388	25	18	28	26	1.98
40682902--40682941	21	1.9	21	100	0	80	27	25	27	20	1.99
40690446--40690715	94	2.9	91	78	10	264	22	29	20	27	1.99
40693180--40693543	48	7.6	48	86	4	432	27	30	16	25	1.97
40693917--40693952	13	2.8	13	95	0	63	11	47	19	22	1.80
40697712--40697767	23	2.4	23	93	0	94	37	28	8	25	1.86
40709117--40709266	41	3.7	41	80	1	185	28	26	23	21	1.99
40716718--40716867	41	3.7	41	80	1	185	30	27	21	21	1.98
40718184--40718214	13	2.4	13	100	0	62	22	29	12	35	1.91
40723262--40723445	40	4.6	40	81	9	214	26	23	26	24	2.00
40723262--40723445	80	2.3	80	86	5	248	26	23	26	24	2.00
40724886--40724915	15	2.0	15	100	0	60	13	26	20	40	1.89
40731901--40731947	25	2.0	25	83	8	62	27	14	4	53	1.60
40732208--40732427	46	5.0	46	81	9	242	21	23	15	39	1.91
40732342--40732417	38	2.0	38	100	0	152	23	23	18	34	1.96
40734561--40734640	31	2.6	30	75	13	74	55	5	0	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40736340--40736655	48	6.6	48	84	7	290	26	31	17	25	1.97
40736376--40736654	96	2.9	96	86	1	380	26	31	17	24	1.97
40736387--40736654	144	1.9	144	88	1	403	26	31	17	24	1.97
40741106--40741180	38	2.0	38	89	0	114	21	21	28	29	1.98
40741152--40741383	43	5.4	43	93	1	369	12	23	34	29	1.92
40741700--40741826	45	2.9	44	78	10	127	25	22	27	25	2.00
40747316--40747542	48	4.7	48	93	1	375	24	17	29	29	1.97
40750864--40750902	19	2.1	19	95	0	69	28	15	17	38	1.91
40753467--40753529	28	2.2	28	97	0	117	22	9	25	42	1.83
40756151--40756417	48	5.6	48	87	5	396	23	18	29	27	1.98
40761234--40761350	43	2.8	42	73	2	108	29	13	23	33	1.93
40764352--40764535	67	2.8	64	76	8	185	28	16	30	23	1.96
40766275--40766402	64	2.0	64	98	0	247	27	16	23	32	1.96
40766706--40766739	10	3.3	10	88	8	50	58	17	20	2	1.51
40772178--40772210	17	1.9	17	88	11	50	36	15	0	48	1.45
40773386--40773443	30	1.9	30	85	0	80	29	25	5	39	1.77
40781634--40781749	57	2.0	58	98	1	225	42	15	6	35	1.74
40793893--40793919	14	1.9	14	100	0	54	37	7	3	51	1.48
40797257--40797344	20	4.8	18	68	23	51	52	2	4	40	1.34
40797750--40797799	24	2.0	25	88	3	75	42	6	0	52	1.26
40802867--40802907	21	2.0	21	100	0	82	34	53	7	4	1.50
40803580--40803795	27	8.2	26	80	9	206	31	9	19	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40803582--40803784	54	3.8	53	82	11	229	32	8	18	40	1.81
40803578--40803784	81	2.6	77	82	9	240	31	8	19	40	1.82
40806819--40806892	17	4.6	16	70	14	53	54	1	1	43	1.17
40807312--40807358	20	2.3	20	88	0	67	34	14	17	34	1.90
40814879--40815026	50	3.0	50	85	3	201	23	17	29	29	1.97
40819069--40819216	29	5.1	29	79	3	127	25	24	12	37	1.91
40819069--40819216	59	2.5	58	79	5	154	25	24	12	37	1.91
40819172--40819245	29	2.6	29	89	4	105	29	24	9	36	1.87
40821654--40821787	68	1.9	71	85	8	186	52	8	3	35	1.49
40825589--40825738	41	3.7	41	83	1	203	20	22	28	29	1.98
40827407--40827490	38	2.2	38	86	0	123	32	27	20	20	1.97
40830800--40830871	24	3.2	23	73	15	69	52	0	4	43	1.20
40830821--40830885	20	3.0	20	70	23	60	55	0	3	41	1.15
40830795--40830885	44	2.1	44	91	0	146	52	0	5	41	1.24
40830808--40830881	24	3.2	24	71	21	77	54	0	2	43	1.14
40832233--40832262	14	2.1	14	100	0	60	60	6	6	26	1.47
40837313--40837359	6	7.5	6	86	9	58	76	6	0	17	0.98
40837380--40837465	9	9.6	9	89	0	127	25	9	20	44	1.81
40841852--40841939	45	2.0	45	88	0	131	21	11	27	39	1.87
40850135--40850172	20	1.9	20	88	0	58	18	13	31	36	1.89
40855638--40855692	23	2.4	23	90	0	92	36	18	23	21	1.95
40856475--40856529	22	2.5	22	97	2	103	38	21	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40862138--40862210	36	2.1	34	87	5	101	53	9	17	19	1.71
40867255--40867327	36	2.1	34	87	5	101	53	9	17	19	1.71
40872774--40872859	38	2.3	38	89	4	129	11	19	32	36	1.88
40874185--40874231	15	3.0	15	77	20	51	34	19	0	46	1.50
40874717--40874764	24	2.0	25	91	4	80	35	16	22	25	1.95
40876866--40877034	43	3.9	43	84	1	214	29	21	26	21	1.99
40881343--40881432	41	2.2	41	83	0	117	17	18	27	35	1.94
40894283--40894371	40	2.2	40	86	4	117	24	20	28	26	1.99
40894308--40894418	40	2.8	39	82	5	116	25	21	28	24	1.99
40902161--40902251	40	2.3	40	86	3	121	24	21	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345