genome.fa.s6.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  162  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55304923--55305066	39	3.7	39	90	1	209	24	22	27	25	2.00
55304993--55305106	39	2.9	38	80	5	104	21	23	28	26	1.99
55304923--55305086	78	2.1	78	84	5	208	23	22	27	26	2.00
55306612--55306860	27	9.2	27	83	6	127	31	10	18	39	1.84
55306623--55306860	54	4.4	55	84	4	204	31	9	19	39	1.83
55306664--55306870	81	2.6	81	80	4	247	32	9	20	37	1.84
55311541--55311601	30	2.0	30	83	0	77	39	6	24	29	1.80
55317317--55317480	27	6.0	27	79	5	186	34	15	21	29	1.94
55317316--55317466	55	2.7	55	88	0	212	35	15	20	28	1.93
55325012--55325055	21	2.1	21	100	0	70	43	13	4	38	1.65
55328221--55328309	29	3.1	29	98	0	169	6	30	3	59	1.39
55329413--55329470	20	3.0	20	78	12	66	36	12	12	39	1.80
55335283--55335316	12	2.8	12	81	0	50	44	0	38	17	1.49
55354521--55354545	13	1.9	13	100	0	50	72	0	0	28	0.86
55360974--55361166	49	3.9	49	81	4	217	26	17	25	29	1.98
55360974--55361166	100	1.9	100	92	2	325	26	17	25	29	1.98
55367730--55367800	24	3.1	24	72	15	69	26	21	16	35	1.95
55379832--55380003	93	1.8	93	94	0	308	28	29	20	20	1.98
55379825--55380000	46	3.8	46	78	12	207	29	29	20	20	1.98
55385973--55386015	21	2.0	21	95	0	77	48	16	0	34	1.46
55386748--55386843	40	2.4	40	82	6	115	25	27	17	30	1.97
55387855--55387879	13	1.9	13	100	0	50	40	16	4	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55397478--55397530	26	2.0	26	82	7	63	26	15	20	37	1.92
55403636--55403758	50	2.4	49	81	10	140	32	14	13	39	1.86
55407942--55408006	31	2.1	31	88	0	94	21	1	24	52	1.56
55409530--55409584	28	1.9	29	88	3	85	32	29	12	25	1.93
55412114--55412221	57	1.9	56	86	1	153	25	27	19	26	1.99
55412120--55412220	28	3.6	29	79	4	116	26	28	18	25	1.98
55412292--55412325	18	1.9	18	88	5	52	20	38	23	17	1.93
55412456--55412482	8	3.4	8	100	0	54	11	25	29	33	1.91
55422154--55422275	46	2.6	46	81	11	142	22	28	18	29	1.98
55426010--55426034	5	5.0	5	100	0	50	80	0	0	20	0.72
55428189--55428213	5	5.0	5	100	0	50	0	20	0	80	0.72
55430345--55430398	25	2.1	26	83	16	69	59	7	3	29	1.42
55437702--55437897	85	2.3	85	85	3	261	26	17	23	31	1.97
55437745--55437942	85	2.3	85	81	3	211	30	17	20	31	1.96
55443041--55443102	25	2.4	26	76	15	65	61	1	4	32	1.27
55445060--55445092	16	2.1	16	100	0	66	39	24	12	24	1.89
55445683--55445853	48	3.6	47	83	4	182	26	31	17	23	1.97
55458769--55458956	45	4.0	45	78	14	216	28	14	32	23	1.94
55458824--55458977	54	3.0	54	72	19	193	26	14	30	27	1.95
55458778--55458977	99	2.0	99	99	0	391	28	15	31	25	1.95
55474677--55474730	27	2.0	27	100	0	108	18	25	14	40	1.89
55475847--55476040	27	7.2	27	86	0	253	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55476183--55476268	27	3.2	27	83	1	102	19	22	20	37	1.95
55476452--55476546	33	2.9	32	79	6	100	24	17	27	30	1.97
55485594--55485657	33	2.0	32	84	3	83	35	20	23	20	1.96
55491416--55491448	18	1.9	17	88	11	50	48	12	3	36	1.56
55491700--55491921	86	2.6	86	89	1	320	29	25	17	27	1.97
55491704--55491922	43	5.1	43	84	4	271	29	26	16	26	1.97
55498407--55498586	43	4.2	43	87	5	247	29	26	17	26	1.97
55501016--55501152	43	3.2	43	76	10	129	29	26	17	26	1.97
55504477--55504642	40	4.2	40	90	2	246	22	21	28	27	1.99
55512403--55512568	40	4.2	40	90	2	246	21	21	29	27	1.99
55523419--55523482	30	2.1	30	94	0	110	53	14	3	29	1.56
55525038--55525068	16	2.0	16	93	6	55	61	0	0	38	0.96
55526368--55526484	43	2.8	41	76	14	121	34	24	16	24	1.95
55531980--55532152	47	3.7	47	77	10	201	27	28	20	23	1.99
55531926--55532101	46	3.8	46	74	10	169	29	28	20	21	1.98
55531933--55532148	93	2.3	93	94	0	369	28	28	20	22	1.99
55535533--55535569	18	2.1	18	100	0	74	16	40	5	37	1.71
55537536--55537573	12	2.9	13	80	11	51	47	0	15	36	1.46
55537616--55537664	14	3.6	14	72	10	57	65	0	4	30	1.11
55537624--55537674	26	2.0	26	84	0	66	66	0	5	27	1.14
55537687--55537719	17	1.9	17	93	0	57	57	0	6	36	1.23
55537845--55537883	12	3.1	12	85	10	51	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55537845--55537907	30	2.2	30	86	10	89	65	0	1	33	1.03
55537860--55537910	17	2.7	19	77	17	54	62	0	1	35	1.06
55537845--55537915	30	2.5	29	80	14	87	66	0	1	32	1.01
55537820--55537910	22	3.6	25	71	21	57	63	2	2	31	1.18
55537961--55538012	27	1.9	27	84	7	70	59	0	3	36	1.16
55539460--55539811	44	8.3	44	73	12	229	27	25	15	31	1.96
55539580--55539825	126	1.9	128	83	6	322	27	26	17	28	1.98
55542494--55542678	48	3.9	48	97	0	343	34	6	29	30	1.83
55548676--55548846	93	1.8	93	84	2	236	30	26	19	23	1.98
55553498--55553552	27	2.0	27	100	0	110	21	25	0	52	1.47
55554770--55554870	24	4.2	24	94	0	175	33	3	42	19	1.70
55555743--55555785	17	2.5	17	80	3	50	32	0	27	39	1.57
55556328--55556410	27	3.1	27	71	11	73	18	21	20	39	1.92
55560511--55560555	12	3.5	13	82	11	58	48	0	13	37	1.42
55560608--55560657	26	1.9	26	83	0	64	66	0	6	28	1.15
55560617--55560710	48	1.9	48	82	8	118	63	2	6	27	1.30
55560804--55560870	17	3.8	17	79	14	73	68	0	1	29	0.98
55565720--55565754	16	2.2	16	94	0	61	57	22	14	5	1.59
55565969--55566036	29	2.3	29	94	0	118	26	13	30	29	1.94
55574809--55574986	27	6.6	27	84	3	205	29	28	15	26	1.96
55574830--55574985	82	1.9	81	88	3	233	29	28	15	26	1.96
55582985--55583162	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55583006--55583161	82	1.9	81	88	3	233	29	28	15	26	1.96
55588395--55588479	38	2.3	38	95	2	154	29	17	24	28	1.97
55590234--55590405	49	3.5	48	78	14	167	26	30	17	26	1.97
55590474--55590640	46	3.6	45	79	9	142	25	29	17	27	1.98
55590224--55590600	46	7.9	48	69	14	192	26	29	17	27	1.98
55591375--55591406	15	2.1	15	94	0	55	37	12	21	28	1.90
55595181--55595590	47	8.6	47	90	5	615	32	8	29	29	1.86
55595181--55595590	96	4.3	96	90	4	636	32	8	29	29	1.86
55597673--55597845	46	3.7	46	77	13	201	20	19	30	30	1.97
55597667--55597838	93	1.8	93	96	0	317	20	20	29	29	1.98
55605252--55605412	46	3.5	47	77	18	171	22	20	28	28	1.98
55608930--55608986	26	2.2	26	81	9	62	28	17	17	36	1.93
55611208--55611258	17	3.0	17	85	5	59	74	5	3	15	1.16
55612625--55612680	24	2.3	25	87	3	78	37	26	14	21	1.92
55636111--55636345	90	2.6	89	79	4	222	29	26	16	26	1.97
55639807--55639983	49	3.7	47	83	7	198	29	19	28	22	1.98
55639765--55639985	49	4.6	50	80	10	196	28	19	29	23	1.98
55642364--55642740	48	7.9	48	97	0	700	35	6	27	30	1.81
55642880--55642982	37	2.8	37	93	0	170	24	19	31	25	1.98
55649978--55650007	15	2.0	15	93	0	51	0	16	0	83	0.65
55652745--55652777	17	2.0	16	94	5	57	0	15	0	84	0.61
55658384--55658645	46	5.6	46	75	11	212	27	20	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55658385--55658645	140	1.9	140	82	5	330	27	20	30	21	1.98
55662825--55663002	27	6.6	27	83	3	205	26	15	28	29	1.96
55662826--55662981	82	1.9	81	88	3	233	26	15	28	29	1.96
55662822--55663002	82	2.2	81	83	2	229	27	15	27	29	1.96
55872784--55872881	27	3.5	28	90	2	135	26	13	28	31	1.94
55872812--55872894	27	3.0	27	87	5	96	30	12	25	32	1.92
55872784--55872895	28	4.0	27	83	6	98	28	12	25	33	1.92
55880058--55880155	27	3.5	28	90	2	135	26	13	28	31	1.94
55880086--55880168	27	3.0	27	87	5	96	30	12	25	32	1.92
55880058--55880169	28	4.0	27	83	6	98	28	12	25	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345