Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  93  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30618506--30618550
13
3.4
13
87
6
72
13
11
6
68
1.37
30618447--30618814
100
3.8
97
80
10
391
26
16
18
39
1.91
30618731--30619442
220
3.2
220
87
4
950
30
15
21
32
1.95
30618731--30619482
75
10.1
75
83
5
873
29
16
21
32
1.95
30619513--30619756
88
2.8
87
80
7
266
29
16
18
35
1.93
30619566--30619599
13
2.7
13
90
4
52
20
14
0
64
1.28
30619686--30620125
151
2.9
152
86
6
605
28
16
23
32
1.96
30619670--30620134
77
6.2
77
84
6
582
27
15
22
33
1.95
30620040--30620378
88
3.8
85
80
6
315
28
15
19
36
1.92
30620063--30620378
175
1.8
175
84
6
435
29
15
20
34
1.94
30621540--30621591
24
2.2
23
83
10
61
36
3
0
59
1.16
30621607--30621678
25
2.8
26
81
6
94
36
6
2
54
1.42
30621636--30621745
29
4.0
28
73
15
97
30
6
4
58
1.43
30621696--30621758
25
2.5
24
84
7
72
30
4
6
58
1.43
30621701--30621772
25
2.8
25
77
10
67
30
5
4
59
1.39
30621818--30621873
25
2.3
24
79
14
62
37
16
3
42
1.65
30624629--30624679
24
2.1
24
96
0
93
23
11
31
33
1.91
30632526--30632613
34
2.5
35
87
1
115
18
17
26
38
1.92
30632519--30632681
36
4.6
36
77
3
152
15
12
30
40
1.85
30634945--30635098
75
2.1
75
89
0
236
29
11
16
42
1.84
30635337--30635810
38
13.0
38
77
9
422
26
22
15
36
1.93
30635337--30635809
75
6.5
74
80
7
456
26
21
15
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30635998--30636043
15
3.0
15
77
22
51
54
0
0
45
0.99
30635988--30636037
15
3.2
17
76
21
56
46
0
2
52
1.12
30637509--30637541
12
2.8
12
90
0
57
24
42
0
33
1.55
30649314--30649405
18
5.2
18
85
2
123
32
15
22
29
1.95
30649314--30649405
35
2.6
36
87
3
141
32
15
22
29
1.95
30650632--30650664
16
2.0
17
88
5
50
57
3
3
36
1.29
30655782--30655828
16
2.9
16
75
9
51
29
0
6
63
1.19
30655817--30655856
20
2.0
20
95
0
71
30
2
15
52
1.55
30656209--30656250
21
2.0
21
95
0
75
42
16
4
35
1.69
30656313--30656351
16
2.4
16
86
4
51
82
15
0
2
0.79
30658921--30658980
6
9.8
6
94
1
102
53
0
30
16
1.44
30660890--30660940
25
2.0
25
88
0
75
11
31
31
25
1.92
30662876--30662931
14
4.2
14
75
13
55
35
5
12
46
1.65
30662873--30662923
25
2.0
25
92
0
84
33
7
11
47
1.69
30675127--30675231
42
2.4
42
85
7
131
37
25
15
21
1.93
30675096--30675260
43
3.9
42
79
9
156
34
26
15
23
1.94
30678310--30678349
8
5.0
8
85
11
55
2
25
25
47
1.64
30679986--30680010
3
8.3
3
100
0
50
68
0
0
32
0.90
30681594--30681618
10
2.5
10
100
0
50
72
0
0
28
0.86
30681889--30682015
60
2.1
60
85
5
168
27
26
17
28
1.98
30684640--30684776
51
2.7
51
79
0
175
40
13
6
39
1.71
30687232--30687360
51
2.5
51
78
0
150
40
13
6
40
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30689604--30689684
36
2.3
33
77
22
85
43
0
3
53
1.18
30696707--30696756
22
2.3
22
80
12
59
34
0
24
42
1.55
30706393--30706457
21
3.1
21
78
8
62
61
0
6
32
1.21
30706477--30706507
12
2.5
13
89
10
55
64
0
0
35
0.94
30706482--30706512
16
2.0
15
93
6
53
64
0
0
35
0.94
30706815--30706921
17
5.9
18
87
6
155
36
14
11
38
1.81
30706815--30706921
35
3.0
35
95
4
187
36
14
11
38
1.81
30710735--30710786
18
2.8
18
85
5
68
42
13
5
38
1.68
30713074--30713194
41
2.9
42
80
7
138
30
27
19
23
1.98
30713037--30713194
84
1.9
84
82
5
203
28
28
19
23
1.98
30713037--30713205
43
4.0
42
75
10
155
29
27
18
23
1.98
30715808--30715849
22
1.9
22
85
9
59
30
38
0
30
1.58
30724038--30724080
19
2.3
18
84
7
59
18
6
11
62
1.50
30724219--30724370
64
2.3
66
82
9
182
31
17
30
20
1.96
30724277--30724430
66
2.3
66
85
5
195
31
18
29
19
1.96
30724949--30725032
42
2.0
42
100
0
168
38
14
14
33
1.86
30726345--30726401
25
2.3
25
75
6
62
31
15
14
38
1.87
30728718--30728761
22
2.0
22
86
8
63
29
38
0
31
1.58
30730104--30730213
43
2.6
43
98
0
211
22
26
16
34
1.95
30739879--30739917
19
2.2
17
86
9
51
76
2
17
2
1.01
30744672--30744766
48
2.0
48
89
0
145
16
20
24
38
1.92
30744677--30744779
48
2.1
48
87
0
143
16
21
24
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30745714--30745739
10
2.6
10
100
0
52
50
11
19
19
1.77
30751538--30751665
47
2.7
48
86
6
170
25
29
18
25
1.98
30753473--30753540
29
2.3
29
85
5
93
27
30
13
27
1.94
30753642--30753720
29
2.7
30
82
13
110
29
30
15
25
1.96
30761581--30761647
29
2.3
29
84
5
91
28
29
13
28
1.94
30761749--30761827
29
2.7
30
82
13
110
29
30
15
25
1.96
30774822--30774904
43
1.9
43
95
0
148
21
19
31
27
1.97
30786180--30786593
46
8.7
49
75
10
260
21
29
21
27
1.98
30786174--30786451
48
5.9
48
76
11
227
23
30
18
27
1.98
30792355--30792485
49
2.7
49
87
0
190
27
22
29
20
1.99
30812377--30812417
19
2.1
20
86
4
57
41
0
26
31
1.56
30812920--30813041
48
2.5
49
81
4
149
28
21
27
22
1.99
30821330--30821421
45
2.0
45
100
0
184
20
19
17
42
1.89
30822096--30822254
39
4.1
39
90
0
228
30
20
21
27
1.98
30824485--30824771
6
47.8
6
96
0
529
17
0
32
49
1.52
30829005--30829088
40
2.1
40
95
0
150
63
7
7
22
1.45
30835263--30835292
16
1.9
16
93
6
53
50
20
0
30
1.49
30835979--30836018
21
2.0
21
85
5
55
27
7
17
47
1.74
30858973--30859082
55
2.0
55
91
8
181
34
14
20
30
1.93
30860053--30860104
25
2.0
26
85
3
70
48
46
3
1
1.31
30861998--30862044
12
3.9
12
86
5
60
31
8
2
57
1.41
30862009--30862040
9
3.6
9
91
0
55
34
6
0
59
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30865282--30865338
26
2.2
25
84
9
71
63
3
0
33
1.12
30871490--30871548
22
2.8
21
80
17
68
59
0
1
38
1.08
30871489--30871548
21
2.8
21
80
16
70
58
0
1
40
1.08
30871525--30871578
16
3.4
16
73
21
51
61
0
0
38
0.96
30871526--30871598
31
2.4
31
83
4
85
60
2
0
36
1.11
30872087--30872146
30
2.0
30
93
0
102
26
3
13
56
1.52
30873327--30873428
29
3.1
35
68
21
103
18
7
27
46
1.77
30873328--30873454
62
2.0
62
90
0
200
18
9
26
44
1.80
30876287--30876405
51
2.4
51
84
8
147
27
18
5
47
1.71
30880526--30880731
103
2.0
103
99
0
403
27
23
10
38
1.88
30885345--30885404
31
1.9
31
96
0
111
38
20
11
30
1.88
30885546--30885725
49
3.7
49
74
12
183
25
31
17
25
1.97
30885547--30885865
46
6.8
46
70
13
195
24
30
17
26
1.97
30890835--30890969
40
3.3
40
74
7
112
30
26
14
28
1.95
30892529--30892608
23
3.5
23
79
3
72
50
26
12
11
1.74
30895404--30895457
27
2.0
27
89
7
83
42
11
18
27
1.84
30897683--30897781
51
1.9
51
91
0
162
30
13
26
30
1.94
30898161--30898245
28
3.0
28
98
0
161
36
2
38
22
1.67
30899145--30899237
45
2.1
45
97
0
177
35
5
21
37
1.76
30904947--30905175
100
2.3
98
84
3
280
27
18
24
29
1.98
30904947--30905188
49
4.9
50
81
3
256
27
19
24
29
1.98
30909787--30909833
10
4.7
10
83
0
58
21
27
17
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30909788--30909834
20
2.3
20
88
0
76
23
25
17
34
1.96
30911398--30911422
12
2.1
12
100
0
50
76
8
0
16
1.02
30911475--30911507
11
2.8
12
86
13
50
84
0
15
0
0.61
30912457--30912491
12
2.8
12
91
4
52
68
0
20
11
1.20
30912472--30912506
17
2.1
17
89
10
54
71
0
25
2
1.00
30916299--30916358
25
2.4
25
97
0
111
50
38
6
5
1.51
30916397--30916450
28
1.9
28
85
7
74
12
61
11
14
1.58
30917512--30917605
15
6.1
15
73
16
66
28
9
5
56
1.53
30917605--30917653
18
2.5
20
71
21
50
36
0
10
53
1.35
30917594--30917661
29
2.4
28
76
11
66
35
0
10
54
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345