genome.fa.s6.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  150  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50787243--50787286	21	2.0	22	82	4	54	13	4	45	36	1.64
50789058--50789165	44	2.5	45	85	7	143	26	15	23	34	1.95
50805592--50805703	43	2.6	43	87	2	145	30	25	18	25	1.98
50808502--50808528	13	2.1	13	100	0	54	29	0	22	48	1.51
50809641--50809764	44	2.9	43	73	15	121	22	16	28	33	1.95
50810983--50811203	46	4.8	46	79	8	211	24	30	18	26	1.98
50810983--50811207	94	2.4	91	82	10	262	25	30	18	25	1.98
50817585--50817754	46	3.7	45	82	12	172	23	31	19	25	1.98
50819999--50820049	25	2.0	24	82	14	59	50	1	9	37	1.47
50823560--50823629	27	2.6	26	95	2	95	31	28	12	27	1.93
50823560--50823657	28	3.5	28	90	2	135	31	28	13	26	1.94
50831833--50831902	27	2.6	26	95	2	95	31	28	12	27	1.93
50831833--50831930	28	3.5	28	90	2	135	31	28	13	26	1.94
50833609--50833776	80	2.1	80	81	5	189	27	27	19	25	1.99
50833649--50833829	80	2.3	80	83	9	210	28	27	20	23	1.99
50833646--50833829	40	4.6	40	81	7	187	28	27	20	23	1.99
50835536--50835562	12	2.2	12	100	0	54	40	0	7	51	1.30
50838559--50838642	33	2.6	33	96	1	152	15	42	23	17	1.88
50843704--50843741	15	2.5	15	95	0	67	42	13	10	34	1.78
50848288--50848355	34	2.0	34	85	5	93	29	23	26	20	1.99
50854112--50854173	23	2.7	22	85	7	79	41	19	17	20	1.90
50855732--50855773	20	2.1	20	86	0	57	38	19	14	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50858240--50858437	55	3.7	53	81	6	184	21	25	17	35	1.95
50860447--50860491	24	1.9	24	86	13	67	37	17	2	42	1.62
50860929--50861034	52	2.0	53	96	1	196	43	24	10	21	1.84
50864570--50864703	47	2.8	48	79	16	163	29	30	18	20	1.97
50867058--50867134	15	5.2	15	80	9	79	57	14	16	11	1.66
50867048--50867134	29	3.0	29	81	9	106	57	14	17	10	1.64
50870059--50870229	92	1.8	93	94	1	308	28	29	21	20	1.98
50870051--50870225	46	3.8	46	79	14	216	29	29	21	20	1.98
50883501--50883659	27	5.9	27	80	11	175	35	22	23	18	1.96
50883519--50883662	54	2.7	54	93	2	236	35	23	23	17	1.95
50892064--50892090	12	2.2	12	100	0	54	44	7	0	48	1.31
50893210--50893236	5	5.4	5	100	0	54	22	0	0	77	0.76
50893261--50893287	14	1.9	14	100	0	54	44	0	11	44	1.39
50904928--50905119	91	2.1	92	83	5	235	41	19	16	22	1.90
50907880--50907906	14	1.9	14	100	0	54	59	7	7	25	1.51
50914652--50914691	19	2.0	21	85	9	57	37	10	10	42	1.72
50915390--50915478	44	2.0	44	88	0	133	47	3	11	38	1.56
50917117--50917155	20	2.0	19	85	5	51	53	5	0	41	1.23
50917117--50917170	19	2.8	19	80	2	54	55	3	0	40	1.17
50917303--50917353	25	2.0	26	96	3	95	37	3	0	58	1.16
50918142--50918209	31	2.2	31	84	5	84	35	7	11	45	1.69
50918849--50918925	35	2.2	34	86	6	102	38	0	19	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50918869--50918958	39	2.4	37	87	7	121	36	0	20	43	1.52
50918869--50918958	19	4.8	19	84	10	123	36	0	20	43	1.52
50919499--50919878	125	3.0	126	87	2	532	36	16	17	29	1.92
50923367--50923409	18	2.4	18	92	0	68	41	9	27	20	1.83
50924998--50925132	48	2.8	46	83	6	155	51	5	8	33	1.57
50925265--50925326	11	5.7	11	77	11	65	43	1	17	37	1.59
50926342--50926403	31	2.0	31	81	6	72	45	0	0	54	0.99
50927347--50927375	15	1.9	15	100	0	58	17	0	0	82	0.66
50928110--50928134	13	1.9	13	100	0	50	88	0	0	12	0.53
50928830--50928913	20	4.2	19	73	10	62	45	5	13	35	1.67
50929077--50929115	20	2.0	20	84	0	51	48	5	15	30	1.66
50929323--50929366	20	2.2	20	83	0	52	47	6	13	31	1.69
50930877--50930917	20	2.0	20	90	0	64	48	7	12	31	1.68
50931230--50931323	40	2.4	39	83	7	109	37	8	13	40	1.76
50931263--50931327	20	3.2	20	73	0	67	36	7	15	40	1.76
50931523--50931573	20	2.5	20	90	0	75	37	7	19	35	1.81
50936947--50936977	9	3.4	9	95	0	53	54	0	12	32	1.38
50939686--50940144	47	9.6	47	91	1	693	28	29	8	32	1.87
50939686--50940144	192	2.4	192	95	0	814	28	29	8	32	1.87
50941755--50941779	13	1.9	13	100	0	50	36	16	16	32	1.90
50946304--50946432	46	2.8	46	84	4	170	27	19	29	23	1.98
50950662--50950703	21	1.9	23	85	9	61	33	0	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50953135--50953222	40	2.2	40	81	0	95	31	4	21	42	1.73
50953128--50953187	20	3.0	20	85	0	75	31	6	16	45	1.74
50953669--50953737	20	3.5	20	72	4	59	37	5	10	46	1.62
50953649--50953743	40	2.4	40	77	10	95	38	6	11	43	1.66
50953739--50953779	20	2.0	21	95	4	75	39	4	24	31	1.76
50960180--50960233	23	2.3	24	78	9	58	40	22	1	35	1.65
50961845--50961890	18	2.6	18	89	0	74	26	17	28	28	1.98
50962228--50962316	27	3.3	27	88	0	115	41	19	10	29	1.84
50962253--50962340	27	3.3	27	85	7	101	42	14	12	30	1.83
50963249--50963380	33	4.2	33	81	13	159	28	22	23	25	2.00
50965136--50965165	6	4.8	6	95	4	51	3	16	0	80	0.85
50966096--50966129	18	1.9	18	88	5	52	11	23	44	20	1.84
50966338--50966411	27	2.8	26	81	6	85	41	17	9	31	1.81
50966375--50966440	27	2.4	27	82	0	69	39	13	16	30	1.87
50966869--50966952	33	2.9	27	74	17	78	25	23	27	23	2.00
50966883--50966975	33	2.8	33	93	0	159	30	21	23	24	1.99
50971816--50971972	42	3.7	41	72	12	120	31	26	18	23	1.97
50973860--50973903	23	1.9	23	86	9	63	36	15	11	36	1.84
50974005--50974063	23	2.8	21	80	19	70	55	20	1	22	1.52
50974005--50974068	9	6.6	9	75	20	58	54	20	1	23	1.53
50974126--50974218	19	5.1	19	70	12	77	46	13	8	31	1.74
50974116--50974244	54	2.4	54	92	0	204	43	15	7	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50979483--50979529	20	2.2	22	88	7	71	68	2	14	14	1.31
50980365--50980474	51	2.1	51	85	8	143	45	6	20	28	1.75
50988498--50988669	93	1.8	93	96	0	317	27	29	21	20	1.98
50988491--50988666	46	3.8	46	79	12	216	28	29	21	20	1.98
50994579--50995054	40	11.9	40	91	1	731	23	21	27	27	1.99
50995093--50995221	29	4.5	28	77	8	118	22	17	29	31	1.96
50995063--50995219	57	2.8	57	90	0	233	22	19	28	29	1.98
50995065--50995221	28	5.5	28	76	8	147	22	19	28	29	1.98
51009341--51009404	25	2.6	25	92	0	101	37	9	14	39	1.78
51013890--51013969	25	3.2	25	96	0	142	36	11	13	38	1.81
51018132--51018199	25	2.7	26	84	9	95	51	8	4	35	1.53
51018140--51018189	25	2.0	25	100	0	100	48	12	4	36	1.59
51019320--51019379	31	1.9	31	83	10	77	31	0	3	65	1.09
51019922--51019963	21	2.0	21	90	0	66	40	4	11	42	1.63
51020170--51020213	19	2.4	18	82	14	54	40	9	2	47	1.48
51020330--51020370	20	2.1	20	86	4	57	46	0	9	43	1.36
51026495--51026533	20	2.0	20	100	0	78	25	5	2	66	1.25
51026552--51026593	19	2.2	20	83	8	52	35	2	2	59	1.23
51026963--51026993	4	7.8	4	100	0	62	22	0	0	77	0.77
51032673--51032730	26	2.2	27	78	6	64	44	3	3	48	1.36
51032689--51032739	25	2.0	25	96	3	93	39	3	3	52	1.38
51034530--51034570	16	2.5	17	76	15	50	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51035020--51035053	17	1.9	18	88	5	52	38	23	8	29	1.85
51050108--51050230	48	2.6	48	89	0	192	25	30	19	25	1.98
51056506--51056566	28	2.1	27	85	8	77	37	1	1	59	1.17
51056504--51056567	9	6.9	9	76	18	60	40	1	1	56	1.18
51056496--51056567	19	3.9	18	77	15	67	37	1	2	58	1.21
51058546--51058758	65	3.3	65	85	1	275	20	19	25	35	1.96
51060952--51060988	17	2.2	17	95	0	65	27	5	21	45	1.73
51065746--51065887	65	2.2	65	85	7	182	24	22	19	33	1.97
51065943--51065988	24	2.0	24	91	4	76	13	23	26	36	1.91
51071714--51071772	29	2.0	29	96	0	109	20	13	13	52	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345