genome.fa.s6.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  114  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37768689--37768748	30	2.0	30	87	6	86	28	3	10	58	1.46
37770901--37770934	16	2.1	16	88	0	50	47	35	2	14	1.60
37783076--37783168	18	5.2	18	85	0	132	29	23	15	32	1.95
37790245--37790278	17	1.9	18	94	5	61	38	20	23	17	1.93
37790716--37790778	31	2.0	31	90	0	99	46	9	6	38	1.62
37793356--37793397	22	1.9	22	90	0	66	42	2	11	42	1.54
37794624--37794749	38	3.3	38	82	3	112	34	16	26	22	1.95
37794651--37795040	37	10.6	36	76	10	224	40	14	18	26	1.90
37794657--37795040	110	3.5	109	75	10	286	40	14	18	26	1.89
37794651--37795151	73	6.8	73	78	5	379	40	14	17	27	1.88
37794686--37795145	147	3.2	145	80	5	374	41	13	17	27	1.87
37795303--37795334	6	4.9	7	92	7	50	71	0	0	28	0.86
37800436--37800477	15	2.9	15	82	10	52	47	0	0	52	1.00
37800701--37800752	16	3.2	16	88	0	77	36	34	0	28	1.58
37802372--37802433	24	2.7	23	78	9	72	50	0	3	46	1.17
37802518--37802567	21	2.4	22	76	10	59	50	26	0	24	1.50
37802532--37802558	14	1.9	14	100	0	54	48	29	0	22	1.51
37802855--37803380	140	3.9	129	78	10	506	31	20	19	28	1.97
37802975--37803389	140	3.0	140	88	0	605	31	20	20	28	1.97
37811086--37811343	40	6.5	40	92	2	342	22	24	28	24	1.99
37816770--37816834	30	2.2	30	88	5	96	47	13	6	32	1.68
37821065--37821153	9	9.7	9	73	13	74	39	2	13	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37821437--37821491	27	2.0	27	100	0	110	61	7	0	30	1.23
37821465--37821723	86	2.9	88	86	7	353	55	4	5	34	1.45
37821348--37821577	117	2.0	115	92	5	385	54	6	5	34	1.48
37821632--37821659	5	5.6	5	100	0	56	82	0	0	17	0.68
37821680--37821962	99	2.9	99	91	4	423	43	6	7	43	1.57
37822612--37822666	8	7.0	8	83	4	67	34	29	1	34	1.68
37824384--37824754	158	2.4	155	77	10	371	29	21	13	34	1.92
37825549--37825601	7	7.4	7	78	4	52	39	41	0	18	1.51
37825716--37825760	14	3.2	14	80	0	54	46	26	2	24	1.64
37829039--37829068	12	2.5	12	94	0	51	30	13	26	30	1.94
37829973--37829998	6	4.3	6	100	0	52	34	0	0	65	0.93
37834487--37834539	23	2.3	23	86	0	70	45	16	11	26	1.82
37834599--37834712	38	2.9	39	77	5	124	44	11	12	31	1.77
37834614--37834715	38	2.6	39	84	3	143	46	12	10	30	1.76
37836662--37836719	7	8.1	7	85	14	59	82	0	0	17	0.66
37836663--37836718	17	3.2	18	94	5	89	85	0	0	14	0.59
37836650--37836719	26	2.8	24	89	8	95	81	0	1	17	0.77
37839703--37839748	23	2.0	23	95	0	83	36	4	15	43	1.66
37843905--37843946	20	2.2	20	87	12	61	45	0	4	50	1.23
37844225--37844264	19	2.2	18	86	4	53	40	2	0	57	1.12
37846578--37846631	22	2.5	22	96	0	99	16	12	18	51	1.75
37847712--37847747	18	1.9	18	88	5	54	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37857291--37857325	3	11.3	3	87	6	52	31	0	2	65	1.07
37857354--37857382	15	1.9	15	100	0	58	20	6	3	68	1.27
37857433--37857605	3	55.3	3	71	12	107	30	8	2	59	1.39
37857685--37857754	3	23.0	3	73	13	54	30	4	2	62	1.28
37861405--37861509	53	2.0	53	82	0	129	39	18	22	20	1.93
37862999--37863190	40	4.8	40	81	0	231	26	27	21	24	1.99
37862971--37863191	80	2.8	79	88	2	318	27	27	20	24	1.99
37866687--37866864	27	6.6	27	84	3	205	29	28	15	26	1.96
37866708--37866863	82	1.9	81	88	3	233	29	28	15	26	1.96
37874804--37874981	27	6.6	27	84	3	205	29	28	15	26	1.96
37874825--37874980	82	1.9	81	88	3	233	29	28	15	26	1.96
37882490--37882681	40	4.8	40	81	0	231	26	27	21	24	1.99
37882462--37882682	80	2.8	79	88	2	318	27	27	20	24	1.99
37886921--37887034	57	2.0	57	100	0	228	31	35	19	14	1.91
37891161--37891521	143	2.6	138	83	8	426	28	19	28	23	1.98
37891347--37891517	93	1.8	95	84	5	240	27	18	29	24	1.98
37891252--37891526	50	5.8	49	71	14	211	29	18	28	23	1.98
37892558--37892614	21	2.6	21	83	5	69	21	29	31	17	1.96
37900239--37900394	80	2.0	79	83	8	201	27	20	25	26	1.99
37900187--37900378	40	4.8	40	87	4	221	26	21	26	25	2.00
37906639--37906896	120	2.2	119	82	6	301	26	21	26	25	1.99
37906639--37906863	40	5.7	40	90	3	305	25	21	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37909164--37909476	45	6.7	45	73	15	217	27	19	29	23	1.98
37909207--37909477	143	1.9	143	84	7	363	27	20	29	22	1.98
37909070--37909475	188	2.2	186	82	8	468	27	19	29	23	1.98
37910408--37910432	13	1.9	13	100	0	50	44	16	40	0	1.47
37911432--37911843	49	8.6	49	91	3	633	28	29	9	32	1.88
37911432--37911843	96	4.3	96	92	2	648	28	29	9	32	1.88
37915779--37916080	40	7.6	40	90	0	444	26	27	21	24	1.99
37917288--37917365	36	2.1	37	90	2	122	25	30	19	24	1.98
37917484--37917944	49	9.6	49	91	2	713	28	29	9	32	1.89
37925652--37925704	26	2.0	26	100	0	106	50	18	18	11	1.76
37925945--37926129	96	1.9	96	79	6	205	34	19	20	26	1.96
37925845--37926133	140	2.1	139	81	3	330	33	17	19	29	1.95
37927811--37927843	3	11.3	3	93	6	59	33	0	0	66	0.92
37927871--37927899	15	1.9	15	100	0	58	20	6	3	68	1.27
37927950--37928095	3	46.3	3	67	16	64	29	8	2	59	1.40
37928078--37928204	64	2.0	64	98	0	245	33	11	3	52	1.52
37932507--37932665	27	5.9	27	79	11	166	33	20	25	20	1.97
37932525--37932668	54	2.7	54	92	2	227	34	21	25	19	1.97
37940605--37940763	27	5.9	27	77	11	148	35	20	23	20	1.96
37940623--37940766	54	2.7	54	89	2	209	36	21	23	18	1.95
37944025--37944145	46	2.6	47	83	6	149	31	17	27	23	1.97
37944197--37944366	49	3.5	48	82	2	198	27	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37953363--37953456	40	2.3	40	81	3	109	31	28	15	23	1.96
37958210--37958266	24	2.4	24	93	0	96	17	19	17	45	1.86
37958210--37958273	24	2.7	23	85	9	83	18	20	15	45	1.86
37965421--37965687	23	11.7	23	77	10	253	30	24	20	23	1.99
37965421--37965687	46	5.8	46	87	5	353	30	24	20	23	1.99
37969572--37969774	40	5.1	40	89	1	282	26	27	22	23	2.00
37974736--37974907	46	3.7	44	74	13	143	28	18	30	22	1.97
37977450--37977655	39	5.2	40	90	5	296	25	27	22	24	2.00
37977466--37977659	79	2.5	79	90	1	309	25	27	21	24	1.99
37980038--37980089	27	1.9	27	84	7	70	19	23	25	32	1.97
37983677--37983878	40	5.1	40	89	4	284	27	27	23	21	1.99
37986577--37986636	31	1.9	32	86	6	88	23	16	5	55	1.61
37987281--37987343	32	2.0	32	90	3	101	28	4	36	30	1.78
37991529--37991593	32	2.0	32	100	0	130	44	24	9	21	1.81
38002757--38002882	61	2.1	61	84	7	161	51	3	2	42	1.30
38005173--38005277	35	3.0	35	82	0	120	33	20	21	24	1.97
38020624--38020684	27	2.4	27	86	13	85	31	8	16	44	1.77
38023959--38023997	20	2.0	20	89	0	60	38	12	0	48	1.42
38028195--38028227	17	1.9	17	88	11	50	18	9	42	30	1.81
38029321--38029615	27	10.9	27	84	1	297	42	21	16	20	1.90
38047328--38047436	49	2.2	49	81	3	121	29	20	26	23	1.99
38054262--38054384	45	2.7	45	80	5	124	34	26	13	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38061085--38061256	49	3.5	49	78	3	170	28	20	27	23	1.99
38062419--38062458	21	2.0	21	90	5	64	12	40	27	20	1.88
38064413--38064509	39	2.5	39	86	5	126	27	21	25	24	1.99
38076016--38076060	23	2.0	22	87	12	65	22	40	8	28	1.84
38079495--38079527	6	5.5	6	96	0	57	81	0	3	15	0.80
38102139--38102292	28	5.5	28	91	1	229	27	12	27	33	1.92
38104251--38104494	48	5.0	48	90	2	380	36	6	26	31	1.81
38104262--38104485	98	2.3	98	91	1	371	36	6	25	31	1.82
38104251--38104509	98	2.6	96	85	5	351	34	5	27	32	1.80
38104635--38104739	37	2.8	37	95	0	183	22	20	32	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345