genome.fa.s6.2.7.7.80.10.50.1000.317.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  317  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106851801--106851894	48	1.9	49	82	6	120	35	4	36	24	1.75
106853290--106853401	27	4.2	26	83	7	134	16	23	23	37	1.93
106853290--106853401	54	2.1	54	88	3	163	16	23	23	37	1.93
106855366--106855473	26	4.2	26	90	0	180	36	25	5	32	1.79
106857401--106857499	17	5.6	17	85	7	135	38	12	12	37	1.80
106857393--106857499	35	3.0	35	93	4	178	38	11	13	37	1.80
106857401--106857499	18	5.6	18	87	4	148	38	12	12	37	1.80
106857748--106857781	18	1.9	18	88	5	52	17	23	0	58	1.38
106857806--106857839	12	2.9	11	87	12	50	35	0	0	64	0.94
106857807--106857915	21	5.3	21	66	20	61	36	2	0	59	1.18
106857804--106857834	16	2.0	16	93	6	55	35	0	0	64	0.94
106857855--106857961	7	15.7	7	69	18	50	38	4	0	57	1.20
106857940--106858009	26	2.7	25	76	8	68	35	5	0	58	1.22
106858296--106858329	3	11.3	3	87	12	52	32	0	0	67	0.91
106858296--106858334	12	3.4	11	86	10	51	30	0	2	66	1.05
106869166--106869234	30	2.3	31	87	2	95	15	39	27	17	1.90
106870534--106870595	30	2.1	30	93	0	106	56	14	3	25	1.53
106873954--106874017	31	2.1	31	100	0	128	34	6	15	43	1.72
106878311--106878544	43	5.4	42	77	17	244	35	7	8	47	1.63
106878311--106878574	89	3.0	89	97	1	496	35	7	9	48	1.62
106879392--106879435	15	3.0	15	93	3	72	13	0	43	43	1.44
106879392--106879432	7	5.7	7	91	5	64	12	0	43	43	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106881928--106881978	21	2.4	21	83	0	57	39	17	3	39	1.68
106883417--106883455	17	2.3	17	90	0	60	35	0	0	64	0.94
106884034--106884074	10	4.0	10	87	3	55	34	0	19	46	1.50
106892269--106892298	8	3.8	8	90	0	51	43	26	26	3	1.70
106892685--106892829	54	2.7	54	91	3	220	18	24	22	35	1.96
106892688--106892829	27	5.2	28	79	7	159	19	23	21	35	1.96
106893881--106894044	31	5.3	31	85	0	229	15	36	29	18	1.92
106901516--106901638	50	2.5	49	80	6	133	37	4	4	54	1.38
106901631--106901662	6	5.3	6	100	0	64	34	0	0	65	0.93
106901625--106901662	18	2.1	18	90	0	58	39	0	0	60	0.97
106909027--106909052	13	2.0	13	100	0	52	15	30	38	15	1.88
106910432--106910772	175	1.9	175	97	0	646	35	19	15	30	1.92
106934162--106934224	31	2.0	32	81	9	76	39	17	11	31	1.85
106935364--106935403	21	1.9	21	89	0	62	37	2	5	55	1.35
106937347--106937389	11	3.9	11	78	0	50	18	9	9	62	1.51
106937428--106937484	29	1.9	30	89	3	89	26	5	10	57	1.53
106937568--106937608	19	2.2	20	86	8	59	19	0	14	65	1.26
106937609--106937642	12	2.8	12	90	0	50	67	0	0	32	0.91
106940412--106940458	16	2.8	17	81	18	62	19	2	2	76	0.99
106940406--106940453	16	3.1	15	85	8	60	18	2	2	77	0.97
106941870--106941957	21	3.9	22	69	22	58	50	3	1	45	1.26
106941937--106941994	15	3.6	15	72	17	53	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106944038--106944076	14	2.8	14	92	0	60	30	20	10	38	1.86
106959093--106959169	38	2.0	38	97	0	145	40	23	9	27	1.84
106962245--106962284	21	2.0	20	85	5	53	47	27	0	25	1.52
106974296--106974403	25	4.3	25	73	1	99	32	20	25	22	1.98
106974296--106974404	50	2.2	51	77	3	130	32	20	24	22	1.98
106980134--106980164	13	2.4	13	88	0	53	32	0	16	51	1.44
106980447--106980471	5	5.0	5	100	0	50	40	0	0	60	0.97
106980465--106980497	15	2.1	16	88	5	50	27	6	3	63	1.32
106984714--106984779	6	10.8	6	77	9	71	16	3	1	78	0.95
106984721--106984776	10	5.3	10	78	18	60	16	3	1	78	0.97
106984712--106984776	31	2.0	33	88	5	98	16	3	1	78	0.96
106987695--106987725	13	2.4	13	88	0	53	32	0	16	51	1.44
106997805--106997879	34	2.2	33	80	13	82	6	13	4	76	1.13
106999337--106999393	28	2.0	28	100	0	114	24	33	14	28	1.94
107000469--107000650	40	4.6	40	89	2	269	25	25	23	24	2.00
107008936--107009157	40	5.6	40	86	8	296	25	27	22	24	2.00
107023959--107024096	42	3.3	41	81	4	159	43	12	20	23	1.86
107024032--107024097	21	3.1	21	82	4	80	42	16	18	22	1.89
107023959--107024127	42	4.0	42	80	6	155	42	13	20	23	1.87
107024043--107024110	21	3.2	21	80	0	73	41	16	23	19	1.90
107023959--107024127	84	2.0	84	83	0	212	42	13	20	23	1.87
107024028--107024141	42	2.7	42	84	8	142	43	15	19	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107024071--107024157	42	2.1	42	82	4	104	45	18	18	17	1.85
107025577--107025611	18	1.9	18	100	0	70	22	31	28	17	1.96
107026952--107027058	42	2.5	43	81	1	117	23	15	28	32	1.95
107026949--107027067	43	2.8	42	78	8	116	22	15	27	34	1.94
107027681--107027752	36	2.0	36	97	0	135	33	9	22	34	1.87
107037500--107037604	28	3.8	28	81	0	138	30	30	11	27	1.92
107046186--107046226	15	2.6	16	88	7	57	24	0	19	56	1.42
107053644--107053719	28	2.7	28	100	0	152	35	25	7	31	1.84
107053841--107053930	27	3.2	28	81	10	105	18	27	23	30	1.98
107055425--107055482	6	9.5	6	80	16	66	13	3	1	81	0.91
107055430--107055482	17	3.1	16	84	13	61	13	3	1	81	0.92
107055432--107055483	11	4.5	11	81	11	59	15	3	1	78	0.98
107062849--107062944	28	3.4	28	77	0	111	30	26	13	30	1.94
107062956--107063035	40	2.0	40	85	0	106	32	27	17	22	1.96
107065309--107065339	6	5.3	6	96	3	55	70	16	0	12	1.16
107065399--107065614	82	2.6	82	78	2	209	45	12	14	27	1.81
107065411--107065946	87	6.5	82	74	9	312	44	10	14	30	1.79
107065685--107065893	86	2.4	86	79	7	219	46	10	11	31	1.74
107067837--107067912	34	2.2	34	83	0	98	22	23	23	30	1.99
107078728--107078947	83	2.7	81	78	4	199	49	11	11	27	1.73
107079178--107079229	22	2.5	20	79	11	59	65	1	0	32	1.04
107082638--107082977	53	6.5	54	71	12	253	23	22	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107082704--107083038	151	2.2	155	93	4	574	25	22	15	36	1.93
107085579--107085764	82	2.3	83	82	2	232	44	13	16	26	1.84
107085715--107086040	87	3.7	87	80	3	282	42	10	14	32	1.80
107087980--107088062	43	1.9	43	87	0	121	31	25	15	27	1.96
107093037--107093154	30	3.9	30	81	4	121	15	27	33	23	1.95
107095109--107095185	12	6.8	12	70	20	67	71	0	3	24	1.03
107095120--107095192	5	13.6	5	73	18	58	73	0	2	23	0.95
107095114--107095187	19	4.0	18	76	13	71	72	0	2	24	0.97
107102433--107102520	44	2.0	44	95	2	160	47	13	3	35	1.60
107103784--107103843	30	2.0	30	90	0	93	30	23	6	40	1.80
107109814--107109938	41	3.1	41	77	3	137	25	19	17	37	1.93
107109815--107109930	40	2.9	40	82	1	133	26	17	16	39	1.90
107110381--107110603	87	2.6	87	86	1	295	42	10	14	31	1.80
107122413--107122480	9	7.6	9	89	0	91	44	17	8	29	1.79
107122413--107122480	27	2.5	27	92	0	109	44	17	8	29	1.79
107122499--107122538	6	6.3	6	83	11	53	17	0	5	77	0.94
107122563--107122587	13	1.9	13	100	0	50	12	0	48	40	1.40
107122564--107122601	18	2.1	18	95	0	67	7	2	47	42	1.46
107122689--107122725	18	2.1	18	94	0	65	32	16	8	43	1.77
107129079--107129104	12	2.2	12	100	0	52	30	7	15	46	1.74
107133357--107133539	39	4.7	39	94	0	321	28	20	27	23	1.99
107138591--107138773	39	4.7	39	89	1	278	31	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107140528--107140654	42	3.0	42	84	6	152	29	25	14	30	1.95
107140613--107140782	47	3.6	47	90	0	252	30	26	15	27	1.96
107140808--107140987	31	5.8	31	92	2	263	25	28	18	26	1.98
107147614--107147819	81	2.5	81	79	2	243	48	14	10	27	1.76
107147774--107148256	87	5.7	85	74	13	340	43	10	14	31	1.79
107147948--107148252	161	1.9	161	83	6	395	43	9	16	30	1.79
107151174--107151213	21	1.9	21	85	10	55	35	0	10	55	1.34
107159592--107159621	15	2.1	15	93	6	53	30	6	26	36	1.82
107161291--107161455	43	3.9	43	84	5	185	24	21	30	23	1.99
107161291--107161454	86	1.9	85	83	10	210	24	21	30	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345