genome.fa.s12.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  104  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34258132--34258320	27	6.9	26	73	12	76	31	7	18	42	1.79
34258219--34258345	27	4.7	27	84	2	166	29	7	20	42	1.78
34258117--34258378	54	4.8	54	74	4	159	31	9	17	40	1.83
34258192--34258378	81	2.3	80	77	8	189	30	9	19	40	1.83
34262014--34262077	31	2.1	31	87	0	92	25	20	15	39	1.92
34262269--34262387	23	5.0	24	87	11	165	27	22	20	29	1.98
34262260--34262387	48	2.7	46	84	11	161	27	22	18	31	1.97
34262431--34262491	18	3.3	18	76	24	65	34	21	9	34	1.86
34262444--34262504	18	3.3	18	79	2	68	34	21	8	36	1.83
34262535--34262580	24	1.9	24	86	0	65	28	10	23	36	1.89
34270093--34270156	31	2.1	30	88	2	92	23	20	15	40	1.90
34270369--34270470	24	4.2	24	90	3	161	28	19	19	32	1.96
34270369--34270470	49	2.1	47	94	3	177	28	19	19	32	1.96
34270519--34270565	20	2.3	20	96	0	85	34	21	10	34	1.88
34270910--34270952	11	3.9	11	90	0	68	13	48	18	18	1.80
34277272--34277345	29	2.6	29	86	4	96	27	16	31	25	1.96
34282977--34283144	27	6.2	27	82	5	196	41	20	17	20	1.91
34283107--34283418	27	11.6	27	89	1	268	28	16	19	35	1.94
34283135--34283415	54	5.2	54	88	0	409	28	17	19	35	1.94
34283135--34283418	81	3.5	81	89	0	424	27	16	19	35	1.94
34284854--34284878	5	5.0	5	100	0	50	40	20	20	20	1.92
34285099--34285143	18	2.5	18	81	0	54	17	15	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34286697--34286760	28	2.2	28	97	2	119	31	14	21	32	1.93
34288169--34288221	25	2.1	25	85	0	70	20	24	22	32	1.98
34297051--34297110	29	2.1	29	90	6	95	35	8	11	45	1.71
34301799--34301842	22	2.0	22	86	0	61	52	0	0	47	1.00
34301934--34301990	15	3.5	15	71	17	51	49	1	1	47	1.22
34302444--34302482	14	2.8	13	92	7	60	35	20	5	38	1.75
34303644--34303686	22	2.0	22	85	0	59	34	23	27	13	1.93
34304201--34304243	17	2.4	18	81	11	54	23	39	23	13	1.90
34311149--34311189	20	2.0	20	100	0	82	34	21	9	34	1.87
34311155--34311199	20	2.4	19	85	7	56	35	24	8	31	1.86
34315531--34315816	27	10.6	27	87	1	358	28	22	9	40	1.84
34315795--34315880	27	3.2	26	83	8	86	40	20	5	32	1.77
34315620--34315843	54	4.1	54	82	2	153	31	21	7	39	1.82
34315533--34315854	81	4.0	81	80	3	191	30	21	8	39	1.83
34315809--34315921	26	4.5	26	77	17	123	45	18	6	30	1.74
34315925--34316010	27	3.1	27	71	17	77	39	16	9	34	1.80
34316064--34316128	27	2.4	27	84	5	87	35	20	24	20	1.96
34317288--34317335	25	1.9	25	86	0	69	33	27	16	22	1.96
34317374--34317430	9	5.9	9	73	15	51	35	8	21	35	1.84
34317372--34317442	20	3.5	20	94	0	124	35	11	21	32	1.89
34317383--34317437	11	5.4	11	70	16	55	36	12	20	30	1.90
34317489--34317657	25	7.0	24	88	6	220	27	20	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34317488--34317656	49	3.5	47	85	8	207	28	20	23	27	1.99
34317849--34317912	31	2.1	31	90	0	101	35	15	23	25	1.94
34326098--34326187	46	2.0	46	88	0	135	31	11	23	34	1.90
34332928--34332994	27	2.5	27	100	0	134	38	35	0	25	1.56
34346939--34347160	40	5.6	39	84	4	232	26	27	20	24	1.99
34372597--34372747	71	2.1	71	91	2	241	30	29	17	23	1.97
34372667--34372879	102	2.2	96	88	6	302	30	30	18	19	1.96
34372760--34372811	27	1.9	27	96	0	95	28	32	25	13	1.93
34372769--34372918	70	2.1	70	90	2	230	30	29	17	22	1.97
34372554--34372995	171	2.6	172	94	3	782	30	30	17	21	1.96
34372839--34373058	102	2.2	103	91	3	356	31	32	18	17	1.94
34373383--34373446	30	2.2	29	81	10	76	29	28	6	35	1.82
34373390--34373446	30	1.9	30	85	3	80	29	24	7	38	1.82
34378979--34379424	221	2.0	221	98	0	865	38	10	19	31	1.86
34380306--34380425	38	3.1	38	85	4	152	23	23	24	29	1.99
34380342--34380462	38	3.1	38	86	2	143	20	20	24	33	1.97
34381527--34381560	16	2.2	16	89	5	52	17	14	0	67	1.23
34385165--34385221	30	1.9	30	85	0	78	14	24	35	26	1.93
34388606--34388663	25	2.3	26	79	8	66	65	8	6	18	1.43
34388653--34388689	18	2.1	18	89	0	56	67	5	0	27	1.12
34388920--34388974	19	2.9	19	79	15	69	65	0	34	0	0.93
34388912--34388989	14	5.1	16	73	14	65	61	1	34	2	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34388931--34388989	15	4.1	14	81	16	59	62	1	33	1	1.15
34397484--34397586	39	2.7	39	90	1	163	23	22	27	27	1.99
34397537--34397624	38	2.3	38	82	2	95	25	23	28	22	1.99
34401114--34401148	17	2.1	17	94	0	61	68	0	25	5	1.11
34404097--34404144	25	1.9	25	86	0	69	33	25	16	25	1.96
34404183--34404259	9	7.9	9	72	16	64	35	9	20	35	1.85
34404192--34404263	11	7.1	11	70	17	66	36	12	19	31	1.89
34404181--34404263	20	4.2	20	96	0	157	36	12	19	32	1.88
34404316--34404434	24	5.0	24	89	9	181	29	21	21	27	1.98
34404317--34404413	47	2.1	47	96	3	178	29	20	20	28	1.98
34404625--34404688	31	2.1	31	90	0	101	35	15	23	25	1.94
34412192--34412239	25	1.9	25	86	0	69	35	22	14	27	1.93
34412277--34412356	9	8.2	9	74	15	70	35	12	20	32	1.90
34412287--34412358	11	7.1	11	73	17	75	36	13	19	30	1.91
34412276--34412358	20	4.2	20	93	0	148	36	13	19	31	1.90
34412412--34412509	47	2.1	47	90	5	153	30	20	19	29	1.97
34412411--34412530	24	5.0	24	85	10	156	30	20	20	28	1.98
34412721--34412784	31	2.1	31	90	0	101	35	15	23	25	1.94
34413553--34413603	24	2.1	25	92	3	86	27	1	19	50	1.58
34415957--34416087	27	4.9	27	87	0	181	29	22	9	39	1.84
34415984--34416114	54	2.4	54	79	0	145	32	22	8	37	1.84
34416065--34416294	27	8.4	27	79	7	178	39	20	9	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34416348--34416439	27	3.4	27	78	3	96	36	19	22	20	1.95
34417135--34417210	20	3.9	20	86	8	104	36	10	19	32	1.86
34417155--34417210	11	5.5	11	75	16	66	37	12	19	30	1.89
34417260--34417330	25	2.8	25	93	2	115	25	23	23	26	2.00
34417475--34417562	42	2.1	42	93	0	149	31	11	15	40	1.83
34417590--34417668	31	2.5	31	97	0	149	26	18	26	27	1.98
34418386--34418425	19	2.1	19	90	0	62	25	10	30	35	1.88
34426987--34427044	20	2.9	20	92	0	89	31	13	22	32	1.93
34427094--34427260	24	7.0	23	85	6	210	28	23	22	26	1.99
34427094--34427260	47	3.5	47	87	4	221	28	23	22	26	1.99
34427094--34427259	71	2.3	71	88	3	244	27	23	22	26	1.99
34435085--34435142	20	2.9	20	92	0	89	31	13	22	32	1.93
34435192--34435358	24	7.0	23	81	6	183	28	21	21	28	1.99
34435192--34435358	47	3.5	47	82	4	185	28	21	21	28	1.99
34435192--34435343	71	2.1	71	87	1	214	28	21	21	28	1.98
34437464--34437698	39	6.0	39	91	0	371	22	24	28	24	1.99
34440059--34440084	13	2.0	13	100	0	52	61	0	23	15	1.33
34442532--34442612	24	3.4	24	94	0	144	40	17	23	18	1.91
34451292--34451465	40	4.3	40	84	5	235	26	26	22	24	2.00
34457031--34457080	21	2.4	21	89	0	73	32	36	16	16	1.90
34457125--34457157	17	1.9	17	100	0	66	42	30	12	15	1.83
34457826--34457868	19	2.4	18	85	11	61	72	4	0	23	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34463754--34463807	26	2.2	24	83	12	65	22	11	3	62	1.43
34471840--34471964	40	3.2	40	82	3	146	36	20	18	24	1.95
34473907--34474045	27	5.1	27	84	6	147	18	24	20	35	1.95
34473907--34474045	54	2.6	55	86	6	178	18	24	20	35	1.95
34475650--34475710	14	4.2	15	77	8	54	19	1	39	39	1.62
34475745--34475807	32	2.0	32	96	0	117	36	3	12	47	1.58
34479530--34479618	44	2.0	44	97	0	169	28	13	12	46	1.79
34481361--34481408	20	2.4	21	82	10	64	22	2	6	68	1.23
34481567--34481751	85	2.2	85	83	4	246	25	16	28	29	1.97
34481568--34481741	43	4.0	43	86	2	233	25	16	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311