genome.fa.s12.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  162  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55284230--55284357	57	2.2	57	88	2	186	28	12	25	32	1.92
55295377--55295469	41	2.3	41	96	0	168	27	26	22	22	1.99
55299414--55299452	19	2.1	19	100	0	78	48	15	0	35	1.45
55306685--55306860	46	3.8	46	81	4	228	29	28	21	20	1.98
55306692--55306863	93	1.8	93	97	0	326	28	29	21	20	1.98
55306693--55306879	46	4.0	45	74	16	159	28	28	20	21	1.98
55316428--55316511	43	2.0	43	100	0	168	44	16	9	29	1.80
55334928--55334975	25	1.9	25	86	0	69	33	25	16	25	1.96
55335014--55335070	9	5.9	9	73	15	51	35	8	21	35	1.84
55335012--55335074	20	3.2	20	95	0	117	36	12	19	31	1.89
55335126--55335269	24	6.0	24	85	9	188	28	22	22	26	1.99
55335126--55335248	47	2.6	47	90	3	185	29	22	21	26	1.99
55335128--55335269	71	2.0	72	86	9	202	28	22	22	26	1.99
55335462--55335525	31	2.1	31	90	0	101	35	15	23	25	1.94
55338473--55338497	13	1.9	13	100	0	50	20	40	24	16	1.91
55338585--55338626	13	3.2	13	96	0	75	16	30	35	16	1.92
55339455--55339479	10	2.5	10	100	0	50	44	28	20	8	1.79
55348377--55348450	29	2.6	29	89	4	105	25	16	32	25	1.96
55359964--55360006	18	2.2	20	84	8	54	37	2	23	37	1.68
55364497--55364717	40	5.6	40	81	3	241	24	25	23	26	2.00
55372579--55372799	40	5.6	40	82	2	250	24	25	23	25	2.00
55391828--55391982	43	3.6	43	100	0	310	29	34	26	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55391980--55392082	38	2.7	38	86	0	134	30	25	22	22	1.99
55391828--55392003	86	2.1	85	93	2	284	29	34	25	10	1.90
55395547--55395754	67	3.2	64	78	8	213	31	16	28	23	1.96
55402554--55402578	12	2.1	12	100	0	50	24	40	28	8	1.83
55404211--55404365	42	3.7	42	77	6	152	29	18	25	27	1.98
55405437--55405562	51	2.5	51	82	0	171	42	13	5	38	1.68
55410569--55410694	51	2.5	51	82	0	171	42	13	5	38	1.68
55414986--55415038	26	2.0	26	100	0	106	37	15	11	35	1.83
55415810--55415938	46	2.7	46	77	11	127	24	20	17	37	1.94
55415875--55415938	23	2.8	23	78	4	67	23	20	18	37	1.94
55415828--55415938	46	2.4	47	83	7	129	22	19	18	38	1.93
55417322--55417355	16	2.1	17	88	5	52	32	0	23	44	1.54
55421494--55421710	78	2.8	78	83	9	227	24	21	27	26	1.99
55421494--55421710	40	5.7	40	78	13	224	24	21	27	26	1.99
55421596--55421733	73	1.9	74	82	7	174	26	19	27	26	1.99
55429378--55429601	79	2.8	80	82	8	253	25	20	28	26	1.99
55429378--55429601	40	5.7	40	81	6	251	25	20	28	26	1.99
55429472--55429624	79	1.9	78	83	6	193	26	18	28	25	1.98
55435134--55435190	30	1.9	29	89	3	87	10	15	17	56	1.67
55441598--55441661	23	2.8	24	83	7	62	15	20	21	42	1.89
55441618--55441682	23	2.8	23	88	4	96	16	29	20	33	1.95
55441567--55441682	46	2.4	46	81	5	124	21	23	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55445143--55445536	47	8.4	47	90	0	608	32	8	30	28	1.87
55447492--55447597	55	1.9	55	84	3	142	27	20	22	29	1.99
55451685--55451718	17	2.0	17	94	0	59	32	23	14	29	1.94
55457873--55458004	60	2.2	60	95	0	237	25	12	11	50	1.74
55481220--55481356	28	4.9	28	82	0	148	25	14	33	26	1.94
55481656--55482077	27	15.7	27	80	4	403	38	21	9	30	1.84
55482029--55482119	27	3.4	27	89	0	119	38	16	16	28	1.90
55497301--55497670	46	7.8	48	73	14	245	28	17	29	24	1.97
55497264--55497472	46	4.5	46	81	8	212	28	19	29	23	1.98
55497309--55497569	138	1.9	142	80	13	317	29	17	29	24	1.97
55499003--55499217	46	4.6	45	75	13	161	29	20	29	20	1.98
55500782--55500821	21	2.0	20	85	14	55	12	37	27	22	1.90
55504556--55504588	13	2.5	13	95	0	57	15	18	39	27	1.90
55506943--55506979	19	2.0	19	94	5	67	48	5	10	35	1.61
55510321--55510427	52	2.1	51	94	1	187	49	7	5	37	1.55
55510327--55510410	26	3.2	26	62	12	64	48	7	5	38	1.55
55513613--55513656	18	2.4	18	84	3	61	77	15	0	6	0.97
55515864--55516098	117	2.0	117	95	0	425	32	17	16	34	1.92
55530985--55531024	17	2.4	17	100	0	80	52	12	17	17	1.74
55544310--55544369	30	2.0	30	86	0	84	28	25	6	40	1.80
55552951--55553001	5	10.4	5	87	10	70	39	0	1	58	1.09
55554911--55554967	30	1.9	30	88	0	87	29	22	8	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55561812--55561870	29	2.0	29	93	0	100	33	10	20	35	1.86
55566758--55566797	21	2.0	21	85	5	55	32	20	10	37	1.85
55569520--55569551	14	2.3	14	94	0	55	21	43	0	34	1.53
55572222--55572439	40	5.5	40	88	2	298	24	28	24	22	1.99
55574168--55574259	25	3.7	25	72	12	82	33	31	13	21	1.92
55581466--55581604	24	5.7	24	71	10	111	32	30	13	23	1.93
55588694--55588858	92	1.8	89	81	6	206	40	15	7	36	1.77
55588977--55589043	30	2.3	29	84	7	82	65	0	1	32	1.02
55588989--55589089	30	3.4	30	76	13	84	66	2	0	29	1.13
55589268--55589463	9	20.3	9	67	16	81	33	5	2	58	1.33
55589334--55589452	48	2.4	49	72	8	118	33	3	1	61	1.22
55591892--55591935	16	2.6	17	82	3	54	56	0	15	27	1.40
55591930--55592444	140	3.7	137	83	7	666	40	7	5	46	1.57
55592329--55592564	120	2.0	119	88	4	352	39	8	6	45	1.60
55598317--55598688	203	1.8	201	84	3	505	41	13	11	33	1.80
55598714--55598805	45	2.0	45	95	0	166	31	9	25	33	1.88
55600395--55600431	14	2.6	14	95	0	65	8	21	27	43	1.80
55604394--55604445	20	2.5	20	87	3	68	30	28	19	21	1.97
55607535--55607567	12	2.6	13	85	9	50	24	9	15	51	1.72
55610140--55610262	44	2.9	43	80	4	124	24	18	26	30	1.98
55614972--55615149	40	4.5	40	88	3	227	23	28	23	24	2.00
55618286--55618676	194	2.0	194	92	0	656	31	20	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55618712--55618801	33	2.7	33	84	3	110	26	24	17	31	1.97
55624330--55624406	27	2.9	27	78	3	75	38	18	10	32	1.84
55624391--55624452	27	2.3	27	85	0	79	37	29	4	29	1.78
55624402--55624596	54	3.4	54	75	14	156	29	25	7	37	1.83
55624402--55624466	27	2.4	26	92	2	103	29	32	3	35	1.73
55624423--55624498	38	2.0	38	92	0	125	26	34	3	35	1.75
55624463--55624598	27	5.0	27	88	0	173	29	21	8	40	1.83
55624575--55624878	27	11.2	27	76	9	181	39	20	9	30	1.84
55624589--55624860	54	5.0	53	77	9	210	40	18	9	31	1.84
55624575--55624769	81	2.4	81	88	2	277	38	21	9	30	1.85
55624575--55624822	81	3.0	81	82	8	274	39	20	9	30	1.84
55624898--55624975	27	2.9	27	77	11	88	37	21	19	21	1.95
55626135--55626182	25	1.9	25	91	0	78	35	25	14	25	1.94
55626219--55626289	20	3.5	20	90	0	106	36	12	19	30	1.89
55626336--55626526	25	7.8	25	92	1	284	27	19	23	29	1.98
55626336--55626553	25	9.0	23	83	11	164	27	20	23	28	1.99
55633313--55633360	21	2.3	21	86	13	73	64	2	6	27	1.28
55635842--55636002	40	4.0	40	79	3	189	28	28	20	22	1.98
55643758--55643917	40	4.0	40	83	4	216	27	28	21	23	1.99
55643744--55643917	79	2.2	80	85	6	241	26	28	21	24	1.99
55652508--55652586	42	1.9	40	92	5	131	25	30	20	24	1.98
55664193--55664384	40	4.8	40	90	1	217	27	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55664173--55664383	80	2.6	81	81	5	241	28	27	20	23	1.99
55666980--55667009	13	2.3	13	94	0	51	26	13	3	56	1.52
55675424--55675450	7	3.9	7	100	0	54	14	55	0	29	1.40
55675424--55675457	14	2.4	14	90	0	50	17	50	0	32	1.47
55679309--55679422	51	2.2	51	92	0	183	29	22	14	33	1.93
55685894--55686003	51	2.2	51	91	0	175	29	23	14	32	1.94
55693906--55693957	23	2.1	26	86	10	74	28	5	5	59	1.44
55695376--55695409	16	2.2	15	89	5	50	55	0	0	44	0.99
55695474--55695531	29	2.0	30	83	10	75	46	12	6	34	1.68
55705326--55705473	52	2.8	52	79	10	167	26	15	27	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311