genome.fa.s12.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  138  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46776892--46776981	27	3.2	27	85	7	119	32	23	24	20	1.98
46777087--46777151	28	2.3	28	91	0	103	32	7	27	32	1.85
46781660--46781863	27	7.6	27	85	6	252	30	27	15	26	1.96
46789590--46789794	27	7.6	27	85	5	252	30	27	15	26	1.96
46792531--46792667	67	2.0	67	98	0	265	40	16	16	27	1.89
46795397--46795456	22	2.7	24	73	19	58	61	3	0	35	1.12
46798786--46798810	13	1.9	13	100	0	50	80	12	8	0	0.92
46798830--46798866	6	6.3	6	87	6	58	67	2	0	29	1.04
46798831--46798866	11	3.2	11	92	4	54	66	2	0	30	1.06
46810241--46810344	40	2.6	40	90	0	163	25	28	24	22	1.99
46810229--46810384	40	3.9	39	70	19	117	25	30	22	21	1.99
46817587--46817629	21	2.0	23	90	9	72	51	20	9	18	1.74
46821490--46821527	19	2.0	19	89	0	58	44	10	15	28	1.80
46826795--46826990	40	4.9	40	93	0	329	25	27	21	26	1.99
46830628--46830661	6	5.7	6	96	0	59	0	20	11	67	1.21
46838207--46838519	156	2.0	156	97	0	590	28	12	20	38	1.88
46853475--46853520	22	2.0	22	91	4	74	36	10	13	39	1.79
46869082--46869110	9	3.3	9	95	4	51	93	0	6	0	0.36
46877254--46877317	18	3.7	18	80	14	64	40	1	1	56	1.18
46877270--46877358	18	5.6	14	71	19	52	32	2	3	61	1.24
46881464--46881697	40	5.9	40	79	6	215	31	20	15	32	1.94
46881478--46881702	119	1.9	119	83	1	290	31	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46890178--46890240	26	2.4	25	76	7	72	20	17	22	39	1.92
46893541--46893594	27	2.0	27	85	0	72	40	5	14	38	1.70
46893886--46893930	20	2.2	20	92	0	72	6	31	44	17	1.75
46895717--46895741	12	2.1	12	100	0	50	0	24	0	76	0.80
46895811--46895868	8	7.1	8	76	3	53	39	1	0	58	1.08
46898682--46898799	45	2.6	44	73	8	112	22	22	13	42	1.88
46899596--46899663	32	2.1	32	81	5	75	29	10	17	42	1.82
46903135--46903342	40	5.2	41	74	13	168	24	23	27	25	2.00
46903131--46903342	80	2.7	80	78	6	252	25	22	26	25	2.00
46908070--46908117	10	4.7	10	94	2	78	33	12	18	35	1.89
46908070--46908135	20	3.2	21	89	4	91	33	12	19	34	1.89
46910247--46910299	26	2.0	26	82	7	63	22	15	22	39	1.91
46912556--46912793	47	5.1	47	90	2	334	27	29	10	32	1.89
46912625--46912749	23	5.2	25	62	30	76	28	28	10	32	1.90
46912603--46912724	22	5.3	22	64	27	65	26	29	12	31	1.92
46912574--46912793	94	2.3	94	93	0	368	27	29	10	32	1.90
46915884--46915991	26	4.2	26	95	0	198	35	25	7	32	1.84
46921294--46921346	26	2.0	26	82	7	63	22	15	22	39	1.91
46922825--46922932	26	4.2	26	95	0	198	35	25	7	32	1.84
46933608--46933650	22	1.9	23	90	4	70	23	53	2	20	1.57
46939816--46939866	24	2.3	21	80	10	57	27	9	5	56	1.54
46949923--46949953	13	2.3	14	94	5	55	70	12	0	16	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46952424--46952521	23	4.3	23	90	2	162	31	26	21	20	1.98
46952431--46952519	45	2.0	45	95	0	160	31	26	22	19	1.97
46955321--46955384	33	1.9	33	87	6	94	31	15	14	39	1.87
46957387--46957432	9	5.3	9	78	19	53	36	13	8	41	1.75
46957600--46957721	23	5.3	23	73	9	88	32	18	26	22	1.97
46962623--46962672	14	3.4	14	75	25	50	32	0	4	64	1.12
46962626--46962685	29	2.1	28	84	9	77	31	1	3	63	1.20
46962626--46962692	32	2.2	28	84	10	80	29	1	5	62	1.28
46963644--46963687	18	2.4	18	81	7	54	63	0	6	29	1.20
46978912--46978958	23	2.0	23	95	0	85	10	34	29	25	1.90
46983115--46983327	106	2.0	106	100	0	426	42	15	8	32	1.78
46990675--46990739	32	2.0	32	90	0	103	35	6	21	36	1.79
46992243--46992281	19	2.1	19	85	0	51	43	10	20	25	1.83
47011737--47011796	30	2.1	28	84	12	77	63	5	6	25	1.39
47011842--47011978	14	9.9	14	67	23	53	61	3	2	32	1.26
47011946--47011980	17	2.1	17	88	0	52	62	2	0	34	1.10
47013988--47014123	22	6.2	22	70	9	82	40	21	13	25	1.89
47013988--47014100	44	2.6	43	78	10	113	39	23	12	23	1.89
47017923--47017978	27	2.1	26	83	6	67	57	1	10	30	1.43
47018418--47018442	13	1.9	13	100	0	50	56	12	0	32	1.36
47018415--47018477	32	1.9	33	87	9	94	55	9	1	33	1.42
47018437--47018521	29	2.8	31	78	5	84	57	4	4	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47019053--47019108	23	2.5	23	85	8	71	57	3	5	33	1.39
47020309--47021045	88	8.6	85	76	12	560	36	17	17	28	1.93
47020488--47020975	81	5.7	83	77	12	386	38	17	16	27	1.91
47020538--47020989	89	5.1	90	77	11	395	37	17	17	27	1.92
47020211--47020962	173	4.4	170	74	15	554	36	18	17	28	1.93
47020863--47020895	14	2.4	14	90	5	50	63	6	18	12	1.48
47020948--47020982	14	2.5	14	90	0	52	62	2	11	22	1.41
47020825--47021045	87	2.5	86	82	4	255	38	16	14	29	1.89
47021844--47021923	41	1.9	42	87	2	117	12	20	15	52	1.74
47033130--47033186	27	2.1	26	83	6	69	57	1	10	29	1.42
47033144--47033195	26	2.0	27	85	11	72	55	3	7	32	1.46
47033632--47033660	15	1.9	15	100	0	58	55	10	0	34	1.34
47033656--47033739	29	2.7	31	78	5	82	57	4	4	33	1.41
47034248--47034322	24	3.3	22	75	16	64	60	6	4	29	1.41
47034282--47034392	12	9.0	12	68	22	54	60	5	3	30	1.36
47034264--47034322	22	2.6	22	81	7	66	62	5	1	30	1.26
47034325--47034379	24	2.2	25	90	6	85	58	3	5	32	1.38
47034366--47034467	20	5.5	18	72	12	82	58	3	1	35	1.28
47034336--47034400	21	2.9	22	84	6	69	60	7	1	30	1.34
47034400--47034471	9	8.4	9	72	15	55	58	1	2	37	1.21
47034394--47034459	34	1.9	34	84	0	87	59	1	3	36	1.22
47043649--47043706	15	3.9	15	79	0	62	3	18	20	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47043678--47043725	20	2.4	20	89	0	69	2	14	18	64	1.38
47043663--47043733	25	2.8	25	80	4	72	4	16	18	60	1.51
47045907--47046121	29	7.4	29	82	5	213	37	13	26	22	1.91
47056187--47056213	13	2.1	13	100	0	54	29	7	22	40	1.81
47057799--47057858	30	2.0	30	100	0	120	33	20	13	33	1.91
47058331--47058569	72	3.3	72	91	1	374	55	14	5	24	1.61
47058995--47059064	18	3.9	18	88	0	104	42	12	11	32	1.79
47060163--47060202	11	3.7	11	86	6	64	20	20	0	60	1.37
47060161--47060201	21	2.0	21	100	0	82	19	21	0	58	1.39
47062644--47062688	10	4.5	10	86	5	56	22	8	2	66	1.30
47066398--47066485	7	11.4	7	79	15	86	25	2	1	71	1.04
47066406--47066489	3	28.7	3	69	25	56	26	2	0	71	0.98
47066419--47066491	25	2.9	25	93	0	119	24	2	0	72	0.98
47067233--47067261	14	2.0	15	93	6	51	24	0	13	62	1.32
47069290--47069470	79	2.3	80	82	8	217	25	28	22	24	1.99
47069269--47069472	40	5.1	40	81	8	229	25	27	22	24	1.99
47070072--47070196	37	3.4	37	100	0	250	32	22	14	30	1.94
47070786--47070843	25	2.5	24	81	13	68	8	18	1	70	1.21
47071780--47071827	10	4.8	10	82	10	62	20	10	2	66	1.32
47073061--47073091	16	1.9	16	93	0	53	19	9	19	51	1.74
47075310--47075367	30	1.9	30	96	0	107	34	13	24	27	1.93
47075745--47075872	46	2.7	47	81	4	152	30	19	27	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47082949--47083006	30	1.9	30	92	0	98	32	13	25	27	1.94
47083341--47083511	46	3.7	47	78	9	131	29	20	27	22	1.99
47083383--47083608	47	4.8	45	75	14	142	29	19	28	22	1.98
47086276--47086445	58	2.8	58	80	11	175	42	0	4	52	1.24
47086405--47086462	28	2.0	29	87	9	84	51	1	0	46	1.11
47088294--47088353	29	2.1	29	84	3	77	55	3	3	38	1.33
47088290--47088360	29	2.4	30	79	11	76	56	2	2	38	1.29
47088660--47088720	30	2.0	30	90	6	97	42	9	4	42	1.59
47088726--47088783	30	1.9	30	89	6	91	36	5	5	53	1.46
47088726--47088791	30	2.2	30	86	5	89	40	6	4	48	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311