genome.fa.s12.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  123  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40966631--40966778	40	3.7	40	87	1	179	33	27	15	23	1.95
40981707--40981803	39	2.5	38	80	8	106	26	29	23	19	1.98
40981784--40981899	39	3.0	39	89	0	169	30	28	17	24	1.97
40983808--40983847	20	2.0	20	85	5	53	32	7	0	60	1.25
40987004--40987032	15	2.0	15	93	6	51	20	13	6	58	1.58
40989870--40990060	55	3.5	54	83	6	226	22	24	17	35	1.95
40990045--40990166	47	2.6	47	90	0	199	27	22	13	36	1.92
40991942--40992124	67	2.8	64	76	7	181	30	15	31	22	1.95
40997403--40997505	40	2.6	40	85	4	127	26	28	24	21	1.99
40998738--40998772	10	3.4	10	88	4	52	0	20	0	80	0.72
41005364--41005506	40	3.6	40	91	2	216	27	28	23	20	1.99
41006736--41006774	12	3.3	12	85	3	53	0	15	0	84	0.62
41010225--41010361	73	1.9	73	87	3	204	27	24	23	24	2.00
41017754--41017902	42	3.5	42	84	7	192	24	15	24	35	1.94
41029539--41029682	39	3.7	39	89	0	225	28	27	22	21	1.99
41031909--41031948	17	2.3	18	91	4	64	25	5	7	62	1.42
41032571--41032734	43	3.8	42	79	12	165	21	17	27	33	1.96
41040781--41041038	40	6.5	40	87	4	319	24	22	26	26	2.00
41047493--41047713	40	5.6	40	87	3	304	22	21	27	28	1.99
41077817--41078039	119	1.9	120	82	6	283	25	27	21	25	2.00
41077815--41078039	40	5.7	40	83	6	269	25	27	21	24	1.99
41085367--41085423	26	2.2	26	80	3	60	28	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41101798--41101951	48	3.2	48	74	3	150	22	29	19	27	1.98
41106834--41106893	30	2.0	30	87	6	86	28	25	6	40	1.80
41111123--41111148	13	2.0	13	100	0	52	61	30	0	7	1.24
41114622--41114951	48	6.9	48	71	10	210	24	28	18	28	1.98
41114622--41114849	96	2.4	96	82	5	257	25	28	18	28	1.98
41114711--41114890	96	1.9	96	83	2	236	26	27	17	28	1.98
41134072--41134296	119	1.9	120	83	6	296	26	27	22	24	2.00
41134072--41134296	40	5.7	40	85	6	287	26	27	22	24	2.00
41135819--41135844	13	2.0	13	100	0	52	46	7	0	46	1.31
41142194--41142369	39	4.5	39	86	8	234	27	27	19	25	1.99
41142194--41142415	79	2.8	79	80	11	251	26	27	20	25	1.99
41150298--41150479	40	4.6	40	77	6	183	25	26	21	25	2.00
41150265--41150479	79	2.7	81	78	9	203	25	26	21	26	2.00
41162102--41162156	22	2.7	21	80	8	69	27	3	5	63	1.33
41162110--41162227	19	5.9	19	71	17	80	35	2	1	60	1.21
41162238--41162370	18	7.6	18	71	9	105	44	9	1	45	1.44
41162238--41162365	53	2.5	51	88	5	186	45	9	1	43	1.45
41162238--41162370	51	2.6	52	89	4	198	44	9	1	45	1.44
41178332--41178850	47	10.5	47	81	12	558	28	29	9	33	1.88
41178644--41178686	22	2.0	22	100	0	86	18	32	20	27	1.96
41178601--41178733	69	1.9	69	93	0	230	24	30	13	30	1.94
41178503--41178827	163	2.0	163	96	0	605	27	29	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41178550--41178780	116	2.0	116	93	0	399	26	30	11	32	1.91
41180343--41180367	13	1.9	13	100	0	50	36	16	16	32	1.90
41191531--41191719	49	3.8	49	81	5	236	25	19	26	28	1.98
41191526--41191713	100	1.9	100	95	2	342	25	20	26	28	1.99
41194137--41194183	19	2.5	19	92	0	76	25	19	10	44	1.82
41195370--41195448	38	2.1	38	97	0	149	32	16	11	39	1.84
41197697--41197734	15	2.6	15	87	4	51	36	0	5	57	1.21
41202590--41202627	18	2.1	18	95	0	67	42	15	23	18	1.89
41205517--41205582	30	2.2	30	88	0	105	25	36	19	18	1.94
41220701--41220781	12	6.8	12	76	5	83	9	33	24	32	1.88
41222030--41222097	24	2.8	24	81	2	82	42	14	23	19	1.88
41223640--41223673	16	2.2	15	89	5	50	44	0	0	55	0.99
41225184--41225333	37	4.1	37	89	3	230	26	30	18	24	1.98
41225540--41225733	47	4.1	47	89	0	280	26	28	11	34	1.91
41227858--41228929	536	2.0	536	98	0	2090	30	22	13	33	1.92
41245638--41245872	49	4.8	49	86	2	326	28	26	19	25	1.99
41245638--41245872	100	2.4	98	89	1	344	28	26	19	25	1.99
41262391--41262424	17	2.1	17	88	5	52	8	0	17	73	1.08
41282598--41282695	28	3.5	28	90	2	135	31	28	13	26	1.94
41283140--41283175	18	2.0	18	88	0	54	41	2	8	47	1.48
41314334--41314385	27	2.0	26	84	3	68	34	21	26	17	1.95
41315055--41315285	27	8.5	27	89	0	318	23	18	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41315269--41315340	27	2.6	27	88	2	99	25	6	23	44	1.78
41317392--41317451	27	2.3	26	85	2	75	36	20	21	21	1.95
41318178--41318456	27	10.4	27	82	4	260	26	17	18	36	1.93
41318179--41318430	53	4.7	54	84	3	294	26	18	18	36	1.94
41318178--41318445	80	3.3	80	82	6	301	26	18	19	36	1.94
41318179--41318453	107	2.6	106	83	4	311	26	17	18	36	1.94
41318410--41318508	27	3.6	27	87	4	128	26	6	23	44	1.76
41323763--41323845	41	2.0	41	100	0	166	30	21	4	43	1.73
41324567--41324601	18	2.0	18	88	5	54	8	0	17	74	1.06
41325280--41325456	46	3.8	46	84	10	218	22	20	28	29	1.98
41327678--41327919	48	5.1	48	77	11	246	28	24	19	27	1.99
41335129--41335237	57	1.9	58	88	1	166	28	28	19	23	1.98
41335449--41335756	40	7.7	40	89	1	458	25	28	22	24	1.99
41337296--41337367	22	3.3	22	78	18	96	47	19	20	12	1.82
41337311--41337376	21	3.1	21	76	20	82	45	21	18	15	1.85
41338964--41339032	27	2.5	28	95	2	122	31	28	13	26	1.93
41347206--41347303	28	3.5	28	90	2	135	31	28	13	26	1.94
41394453--41394494	22	1.9	22	85	0	57	40	2	2	54	1.26
41398971--41399236	46	5.8	45	78	15	283	22	20	27	29	1.98
41398968--41399231	93	2.8	93	96	0	474	21	20	28	29	1.98
41401857--41402091	48	4.9	48	77	12	241	27	25	19	27	1.99
41409285--41409393	57	1.9	58	90	1	175	28	27	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41409605--41409912	40	7.7	40	88	1	449	25	28	21	24	1.99
41412005--41412083	37	2.1	37	90	0	122	25	31	18	24	1.98
41412202--41412413	47	4.5	47	93	0	343	28	30	8	32	1.87
41416707--41416938	40	5.8	40	84	4	333	25	20	28	25	1.99
41416708--41416939	80	2.9	80	96	0	428	24	20	28	26	1.99
41438861--41438893	17	1.9	17	93	0	57	15	12	15	57	1.65
41439099--41439259	81	2.0	81	100	0	322	31	11	19	37	1.87
41457791--41457883	40	2.3	40	83	7	109	27	29	16	26	1.97
41464448--41464602	43	3.6	43	92	1	258	30	32	24	11	1.91
41464595--41464678	38	2.2	38	89	0	132	30	27	21	20	1.98
41478415--41478570	68	2.3	67	77	13	147	34	16	28	21	1.94
41483940--41483964	11	2.3	11	100	0	50	32	24	8	36	1.84
41498644--41498687	3	14.7	3	95	0	79	65	0	2	31	1.05
41511472--41511694	40	5.6	40	86	3	299	34	28	19	17	1.95
41520629--41520838	27	7.8	26	83	6	170	41	19	17	22	1.90
41520629--41520838	54	3.9	54	86	0	269	41	19	17	22	1.90
41520684--41520838	81	1.9	81	93	0	265	39	20	17	22	1.92
41522821--41522901	28	2.9	28	77	1	90	28	16	32	23	1.96
41523213--41523325	27	4.2	27	89	4	165	35	22	11	30	1.89
41523209--41523326	54	2.2	54	89	3	184	36	21	11	30	1.89
41523305--41523393	27	3.3	27	88	0	124	37	15	16	30	1.91
41523209--41523352	54	2.7	53	84	4	164	36	20	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41528336--41528362	14	1.9	14	100	0	54	14	37	29	18	1.91
41530580--41530679	40	2.4	43	85	8	134	30	16	26	28	1.96
41536386--41536595	105	2.0	105	86	1	296	31	15	26	26	1.96
41549197--41549231	15	2.4	15	85	4	54	48	11	2	37	1.54
41550124--41550183	27	2.3	26	82	2	66	38	20	20	21	1.94
41552982--41553043	31	2.0	31	87	0	88	41	16	16	25	1.88
41556327--41556501	49	3.7	47	76	11	171	25	21	30	22	1.98
41556321--41556512	93	2.1	94	84	8	250	23	19	31	24	1.98
41556330--41556552	49	4.7	49	76	10	169	26	20	30	23	1.98
41559350--41559533	67	2.8	64	74	10	176	28	16	31	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311