genome.fa.s12.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  202  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69594334--69594360	12	2.2	12	100	0	54	18	0	25	55	1.43
69603559--69603708	43	3.5	42	79	7	160	32	21	16	29	1.95
69603543--69603706	86	1.9	85	80	8	190	32	21	16	29	1.95
69606893--69606934	12	3.8	12	84	12	54	35	0	42	21	1.53
69608045--69608482	54	8.1	54	84	4	427	41	20	16	21	1.90
69608053--69608482	27	15.9	27	84	5	388	41	20	16	21	1.90
69609796--69609882	43	2.0	43	88	0	129	33	26	9	31	1.88
69611053--69611084	16	2.0	16	100	0	64	31	50	6	12	1.65
69614232--69614398	43	3.9	42	82	4	192	32	25	14	27	1.94
69615626--69615774	43	3.5	42	79	7	149	32	16	18	32	1.93
69622590--69622745	63	2.4	63	81	11	172	24	27	16	31	1.96
69623441--69623501	30	2.0	30	83	0	77	31	22	8	37	1.84
69628771--69628821	6	8.3	6	75	12	50	21	0	1	76	0.88
69628791--69628819	14	2.1	14	100	0	58	27	0	0	72	0.85
69629636--69629698	27	2.4	27	89	2	101	34	19	22	23	1.96
69634572--69634743	93	1.8	93	95	2	310	28	29	20	20	1.98
69634565--69634740	46	3.8	46	79	14	209	29	29	20	20	1.98
69642140--69642311	93	1.8	93	96	0	317	27	29	21	20	1.98
69642133--69642308	46	3.8	46	79	12	216	28	29	21	20	1.98
69657118--69657218	43	2.3	43	74	19	102	32	29	13	23	1.94
69659229--69659290	3	21.7	3	82	9	60	27	3	0	69	1.04
69674003--69674052	26	1.9	26	91	0	82	30	32	24	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69674082--69674305	104	2.2	104	93	1	378	31	31	19	17	1.95
69674632--69674695	30	2.2	29	81	10	76	29	28	6	35	1.82
69674639--69674695	30	1.9	30	85	3	80	29	24	7	38	1.82
69679057--69679261	27	7.6	27	85	4	261	26	14	28	30	1.95
69685112--69685335	104	2.2	104	93	1	378	31	31	19	17	1.95
69685657--69685720	30	2.2	29	81	10	76	29	28	6	35	1.82
69685664--69685720	30	1.9	30	85	3	80	29	24	7	38	1.82
69709413--69709532	29	4.2	29	85	1	161	25	14	29	30	1.95
69713670--69713704	16	2.2	16	94	0	61	48	20	22	8	1.76
69713913--69714036	29	4.3	29	80	3	144	25	12	29	31	1.93
69723057--69723182	46	2.7	46	82	13	143	22	20	28	28	1.98
69728020--69728150	46	2.8	47	79	14	155	21	19	29	29	1.98
69728018--69728143	47	2.7	46	83	13	152	21	20	29	28	1.98
69737570--69737694	39	3.2	39	86	0	178	22	24	20	32	1.97
69757661--69757782	45	2.7	45	82	1	147	28	13	27	30	1.95
69759917--69759946	15	1.9	16	93	6	53	23	13	6	56	1.60
69763456--69763513	9	6.1	9	80	11	53	60	3	0	36	1.14
69763887--69764039	82	1.9	82	83	2	200	36	12	9	41	1.75
69767402--69767463	27	2.2	28	86	8	83	17	1	3	77	0.98
69767403--69767463	22	2.8	21	87	5	77	18	1	3	77	0.99
69767400--69767457	10	5.5	10	72	11	53	18	1	3	75	1.03
69768330--69768377	21	2.3	21	78	7	53	18	35	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69777797--69777873	34	2.3	34	95	4	138	35	7	35	22	1.83
69781136--69781335	58	3.2	58	71	20	152	50	4	4	41	1.43
69785762--69785786	13	1.9	13	100	0	50	36	16	8	40	1.77
69788100--69788248	47	3.2	46	86	0	190	31	26	15	26	1.96
69789195--69789273	26	3.1	27	78	10	87	29	21	17	31	1.96
69789323--69789379	20	2.8	20	86	0	87	29	19	14	36	1.91
69789323--69789378	11	5.5	11	71	16	57	28	19	14	37	1.91
69794622--69794720	51	1.9	51	93	0	171	42	5	13	39	1.66
69800462--69800542	24	3.4	24	77	13	87	49	0	1	49	1.08
69800478--69800516	11	3.4	11	80	13	51	51	0	2	46	1.14
69800461--69800541	15	5.2	15	71	21	60	48	0	1	50	1.08
69800496--69800534	14	2.5	16	88	12	55	46	0	0	53	1.00
69801861--69801893	3	11.0	3	100	0	66	33	0	0	66	0.92
69802045--69802103	27	2.3	27	83	11	72	38	0	30	30	1.57
69802248--69802343	39	2.5	39	80	6	108	20	23	28	27	1.99
69805127--69805270	68	2.1	68	79	14	163	39	4	6	50	1.47
69808213--69808396	79	2.3	81	83	8	225	25	27	22	24	2.00
69808211--69808396	40	4.7	40	82	7	218	25	27	22	24	2.00
69816173--69816393	39	5.6	39	81	11	215	24	27	22	24	2.00
69816173--69816394	78	2.8	78	81	11	265	25	27	22	24	2.00
69818581--69818650	35	2.0	35	94	0	122	40	11	24	24	1.88
69824116--69824316	75	2.7	77	83	11	258	24	28	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69824119--69824321	39	5.5	38	81	13	239	25	27	24	23	2.00
69824876--69825012	40	3.5	40	88	5	203	24	27	23	24	2.00
69825613--69825800	40	4.7	40	83	3	254	25	26	21	27	1.99
69825574--69825800	79	2.9	79	84	3	271	25	25	21	27	1.99
69828930--69829102	46	3.8	47	75	17	168	20	20	29	29	1.98
69836374--69836549	46	3.8	46	79	14	209	20	20	29	29	1.98
69836371--69836542	93	1.8	93	95	2	310	20	20	29	28	1.98
69843866--69843990	47	2.7	47	85	5	164	30	24	16	29	1.96
69854816--69855107	101	2.9	101	88	2	408	30	26	18	25	1.98
69854766--69855103	50	6.7	50	77	5	331	30	26	18	25	1.98
69855487--69855533	19	2.3	20	82	10	60	48	14	0	36	1.44
69862321--69862362	10	3.7	11	87	12	59	73	7	4	14	1.21
69866256--69866303	25	1.9	25	86	0	69	31	22	16	29	1.96
69866354--69866391	20	2.0	19	90	10	60	31	10	21	36	1.87
69866434--69866500	26	2.6	25	90	4	107	25	26	22	25	2.00
69866433--69866517	25	3.4	25	80	15	79	27	23	23	25	2.00
69869078--69869147	35	2.0	35	100	0	140	31	5	25	37	1.80
69878788--69878950	46	3.5	46	71	18	149	31	26	18	23	1.97
69878886--69878971	46	1.9	45	83	4	111	31	27	17	23	1.97
69879383--69879443	30	2.0	30	87	6	88	32	24	6	36	1.81
69880361--69880388	14	2.0	14	100	0	56	42	28	0	28	1.56
69884630--69884853	104	2.2	104	93	1	378	31	31	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69885182--69885245	30	2.2	29	81	10	76	29	28	6	35	1.82
69885189--69885245	30	1.9	30	85	3	80	29	24	7	38	1.82
69892191--69892414	104	2.2	104	93	1	378	31	31	19	17	1.95
69892743--69892806	30	2.2	29	81	10	76	29	28	6	35	1.82
69892750--69892806	30	1.9	30	85	3	80	29	24	7	38	1.82
69895019--69895248	40	5.8	40	91	2	338	23	23	28	23	1.99
69897262--69897313	21	2.5	21	90	0	77	19	23	38	19	1.93
69898539--69898746	46	4.5	46	78	7	174	24	30	18	26	1.98
69900548--69900613	32	2.1	32	100	0	132	34	34	12	18	1.88
69906260--69906469	46	4.5	46	78	6	167	24	29	19	26	1.98
69910337--69910373	19	1.9	19	88	0	56	48	13	0	37	1.43
69912784--69912912	50	2.5	51	90	5	199	35	16	22	25	1.94
69912888--69913036	31	4.8	31	89	6	230	25	18	28	27	1.98
69913061--69913226	47	3.7	46	80	7	153	27	16	26	29	1.97
69913155--69913271	42	2.8	42	84	5	137	29	14	27	28	1.95
69913155--69913252	42	2.3	42	91	3	153	29	14	28	27	1.95
69917588--69917628	19	2.2	19	95	0	73	43	14	7	34	1.73
69918344--69918395	22	2.4	22	80	6	61	30	13	23	32	1.93
69918460--69918490	16	1.9	16	93	0	53	9	9	9	70	1.33
69920021--69920121	39	2.6	39	90	0	157	29	28	17	23	1.97
69920936--69920996	30	2.0	30	83	0	77	40	4	22	31	1.75
69927745--69927858	55	2.1	55	98	0	219	34	10	22	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69933228--69933386	53	3.0	54	81	5	196	25	28	12	33	1.92
69934129--69934176	20	2.3	22	79	13	57	22	27	6	43	1.77
69935598--69935775	27	6.6	27	79	3	115	28	28	16	26	1.97
69935598--69935775	54	3.3	55	80	10	204	28	28	16	26	1.97
69935619--69935774	82	1.9	81	85	3	215	28	28	16	26	1.97
69943496--69943673	27	6.6	27	79	3	115	28	28	16	26	1.97
69943496--69943673	54	3.3	55	80	10	204	28	28	16	26	1.97
69943517--69943672	82	1.9	81	85	3	215	28	28	16	26	1.97
69945384--69945458	29	2.5	30	84	6	98	22	17	13	46	1.82
69947801--69947826	11	2.4	11	100	0	52	46	7	23	23	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311