genome.fa.s12.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  131  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44172170--44172326	28	5.5	28	75	6	136	29	29	19	21	1.97
44172197--44172298	29	3.6	29	80	7	118	29	31	16	22	1.96
44172170--44172330	57	2.8	57	90	0	232	29	29	18	21	1.97
44172358--44172612	40	6.4	40	93	0	420	26	26	20	26	1.99
44178093--44178130	13	2.8	13	96	4	67	31	7	15	44	1.75
44181420--44181679	131	2.0	131	92	0	430	29	16	20	33	1.94
44186028--44186203	46	3.8	46	76	14	191	21	19	29	28	1.98
44186025--44186195	93	1.8	93	92	2	290	21	20	29	28	1.98
44189180--44189310	65	2.0	65	98	0	253	23	15	19	41	1.89
44200429--44200479	26	2.0	26	84	7	68	58	17	9	13	1.61
44201253--44201467	108	2.0	108	87	0	313	31	17	16	34	1.92
44209738--44209786	24	2.0	24	88	7	73	20	22	14	42	1.88
44210568--44210635	27	2.5	27	87	0	91	25	13	19	42	1.87
44210568--44210647	27	3.0	27	86	0	88	22	12	21	43	1.86
44216715--44216855	50	2.8	50	86	2	176	30	24	18	26	1.98
44223987--44224062	22	3.3	22	67	22	66	31	10	31	26	1.90
44223952--44224154	47	4.3	47	87	3	286	33	9	30	26	1.88
44224225--44224309	40	2.2	40	86	2	118	17	21	31	29	1.96
44226889--44227039	40	3.8	41	88	2	193	22	28	25	23	1.99
44235046--44235196	40	3.8	39	85	4	187	22	27	25	24	2.00
44240615--44240688	33	2.3	33	81	6	80	40	18	21	18	1.91
44244565--44244665	51	2.0	51	94	0	175	39	10	17	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44246393--44246464	24	3.0	24	74	9	67	19	22	18	40	1.92
44248629--44248898	37	7.4	37	73	13	202	39	15	18	26	1.91
44248629--44248898	73	3.7	72	76	6	242	39	15	18	26	1.91
44248841--44248952	58	2.0	56	91	3	179	39	16	20	24	1.92
44248898--44248974	35	2.2	36	92	2	129	33	18	23	24	1.96
44248915--44249032	58	2.0	58	91	3	193	33	17	24	23	1.96
44248950--44248998	23	2.2	23	88	3	73	30	16	28	24	1.96
44248973--44249210	35	6.7	35	74	8	176	37	15	20	26	1.92
44248973--44249164	35	5.4	36	79	7	185	36	15	21	26	1.93
44248973--44249164	72	2.7	72	80	3	224	36	15	21	26	1.93
44250105--44250140	16	2.2	16	90	0	54	63	2	5	27	1.30
44254950--44254981	5	6.4	5	100	0	64	81	0	0	18	0.70
44255411--44255674	129	2.0	129	86	1	368	31	24	19	25	1.98
44257056--44257115	23	2.5	24	78	10	61	53	1	0	45	1.10
44259044--44259258	40	5.5	40	88	4	278	23	23	27	25	2.00
44259044--44259258	78	2.7	79	86	5	285	23	23	27	25	2.00
44267130--44267312	40	4.6	40	92	0	276	21	22	28	26	1.99
44285324--44285491	46	3.6	46	78	4	185	19	21	29	29	1.98
44285331--44285400	20	3.2	20	64	21	50	17	17	31	34	1.93
44285320--44285492	93	1.9	93	91	0	283	19	21	30	28	1.98
44287787--44287906	44	2.7	43	88	3	159	33	30	16	19	1.94
44292123--44292279	26	6.5	24	77	10	117	24	22	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44292148--44292281	24	5.6	24	76	10	89	24	24	20	30	1.98
44292394--44292432	20	2.0	20	89	0	60	38	10	12	38	1.78
44294058--44294226	47	3.6	47	79	11	186	25	29	17	27	1.98
44297161--44297204	8	5.5	8	94	0	79	43	22	22	11	1.85
44297161--44297220	16	3.8	16	84	6	77	45	20	21	13	1.85
44297154--44297220	24	2.8	24	81	0	98	46	17	20	14	1.84
44297421--44297537	29	4.1	28	76	5	85	29	15	29	26	1.96
44298578--44298612	18	2.0	18	88	5	54	37	20	14	28	1.91
44299162--44299218	30	1.9	30	92	0	96	33	14	26	26	1.94
44299546--44299759	46	4.6	45	79	10	202	28	18	28	23	1.98
44307353--44307469	46	2.5	46	86	5	146	22	31	18	27	1.97
44317709--44317931	40	5.6	39	79	7	207	25	21	27	25	1.99
44317791--44317966	79	2.2	80	80	4	187	26	21	28	24	1.99
44325970--44326223	27	9.4	26	82	6	256	39	22	9	29	1.84
44325984--44326223	54	4.5	53	87	4	313	40	21	8	29	1.83
44325984--44326218	81	2.9	80	86	3	294	40	21	8	28	1.83
44326255--44326340	27	3.2	27	88	0	127	36	15	17	31	1.91
44326255--44326351	27	3.6	27	87	0	122	35	18	17	28	1.94
44326262--44326369	27	4.0	27	81	2	101	34	18	19	27	1.95
44326253--44326365	54	2.1	53	81	4	136	36	15	18	29	1.92
44327105--44327184	27	3.0	26	83	5	106	18	21	20	40	1.92
44327305--44327485	6	29.3	6	68	17	86	18	18	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44327305--44327371	25	2.7	25	80	0	71	17	19	14	47	1.82
44327336--44327408	37	2.0	37	86	0	101	20	20	9	49	1.77
44327305--44327439	62	2.2	62	87	0	198	18	19	14	48	1.81
44327373--44327464	25	3.4	25	78	16	94	18	19	14	47	1.82
44327333--44327459	19	6.8	18	71	15	64	18	20	13	48	1.81
44327327--44327464	31	4.5	31	76	10	147	18	19	13	48	1.80
44329362--44329546	68	2.8	64	81	10	214	25	27	16	30	1.96
44330213--44330273	30	2.0	30	84	6	79	34	22	6	36	1.81
44332908--44333031	29	4.3	29	81	2	126	27	14	28	29	1.95
44337567--44337676	31	3.6	29	68	12	78	26	12	11	49	1.75
44339217--44339345	46	2.7	47	82	8	156	23	29	20	27	1.99
44339317--44339438	47	2.7	46	88	2	183	25	26	19	28	1.99
44343935--44343972	19	2.0	20	85	15	53	39	23	0	36	1.55
44344699--44344758	30	2.0	30	86	0	84	33	25	5	36	1.78
44351421--44351458	19	2.0	20	85	15	53	39	23	0	36	1.55
44360802--44361023	47	4.8	46	75	13	179	27	18	28	24	1.98
44360805--44361022	45	4.7	46	75	11	185	27	18	28	24	1.98
44375642--44375753	56	2.0	56	100	0	224	25	23	14	37	1.92
44381049--44381255	53	3.8	53	76	1	171	20	24	17	37	1.93
44381355--44381395	13	3.2	13	82	0	55	58	2	7	31	1.38
44390888--44391013	46	2.7	46	83	11	150	23	30	18	27	1.98
44396273--44396390	48	2.5	48	82	0	137	27	17	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44397657--44397742	28	3.0	28	83	6	93	27	29	13	29	1.95
44397959--44397989	16	1.9	16	93	0	53	12	25	12	48	1.77
44397950--44398004	24	2.3	23	87	6	83	14	21	16	47	1.82
44397961--44398003	16	2.7	16	85	0	50	13	23	13	48	1.79
44401490--44401534	25	1.9	23	82	13	56	40	20	0	40	1.52
44401887--44402065	41	4.3	41	88	5	254	36	24	20	18	1.94
44401887--44402065	84	2.2	82	87	6	254	36	24	20	18	1.94
44402710--44402764	25	2.2	25	96	0	101	40	21	0	38	1.54
44402735--44404110	392	3.5	392	99	0	2709	40	20	8	30	1.82
44407299--44407470	93	1.8	93	91	0	281	28	29	21	20	1.98
44407291--44407466	46	3.8	46	76	12	180	29	29	20	20	1.98
44409790--44409955	48	3.5	48	80	6	176	24	28	16	30	1.97
44422975--44423090	46	2.6	46	85	9	143	25	27	17	30	1.97
44422968--44423090	43	2.8	43	84	8	142	24	26	19	29	1.98
44424527--44424573	10	4.4	10	82	15	58	51	27	4	17	1.64
44424531--44424573	23	1.9	22	90	4	68	51	27	4	16	1.64
44427638--44427690	26	2.0	27	85	7	74	24	15	22	37	1.92
44439468--44439494	7	3.9	7	100	0	54	11	0	0	88	0.50
44448879--44448932	24	2.4	22	85	11	81	25	24	16	33	1.96
44456455--44456604	41	3.7	41	82	1	203	20	22	27	29	1.99
44464675--44464734	12	5.0	12	71	15	52	38	31	13	16	1.87
44464646--44464745	24	4.2	24	85	0	119	37	32	13	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44492006--44492079	29	2.6	29	87	8	98	24	33	16	25	1.95
44494431--44494516	43	2.0	43	95	0	154	18	20	32	27	1.96
44507346--44507521	46	3.8	46	81	5	203	28	28	21	22	1.99
44507354--44507525	93	1.8	93	90	2	274	27	29	21	22	1.99
44513588--44513632	22	2.0	22	100	0	90	42	17	4	35	1.70
44515954--44516177	40	5.6	40	87	3	297	24	23	26	25	2.00
44515961--44516177	83	2.7	80	88	5	296	23	23	27	25	2.00
44524149--44524372	40	5.6	40	87	3	288	25	23	25	25	2.00
44524156--44524372	83	2.7	80	87	5	287	24	23	26	25	2.00
44529126--44529283	43	3.7	42	80	10	171	31	24	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311