genome.fa.s12.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  92  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29578778--29578887	31	3.5	31	92	2	177	30	25	17	27	1.97
29579109--29579134	13	2.0	13	100	0	52	23	30	38	7	1.83
29579120--29579186	24	2.7	25	90	4	109	20	23	26	28	1.99
29579992--29580056	27	2.4	27	84	5	87	20	24	20	35	1.96
29580087--29580296	27	7.7	27	75	7	138	32	9	18	40	1.82
29580194--29580362	27	6.3	27	73	9	105	31	12	21	34	1.90
29580316--29580401	26	3.3	26	88	3	120	41	11	19	26	1.86
29580328--29580417	26	3.4	26	84	4	110	42	10	22	25	1.84
29582413--29582457	20	2.2	20	88	0	63	48	2	13	35	1.54
29586463--29586493	16	1.9	16	93	0	53	35	22	0	41	1.54
29586460--29586499	20	2.0	20	85	0	53	37	22	0	40	1.54
29586680--29586934	55	4.8	54	78	9	215	21	24	16	36	1.94
29586727--29586927	108	1.8	110	86	4	291	22	24	17	35	1.95
29588423--29588501	38	2.1	38	100	0	158	10	20	27	41	1.84
29590821--29590881	30	2.0	30	90	0	95	39	6	24	29	1.80
29604327--29604364	19	2.0	20	89	5	60	21	23	36	18	1.95
29605351--29605471	43	2.9	42	75	2	116	31	23	15	28	1.96
29622593--29622652	23	2.6	23	89	0	93	15	31	30	23	1.95
29627595--29627799	27	7.6	27	85	3	241	29	27	15	27	1.96
29635770--29635942	48	3.6	48	79	1	213	27	19	27	26	1.99
29641045--29641252	67	3.2	64	76	12	190	31	15	29	23	1.95
29644613--29644669	27	2.1	27	100	0	114	19	15	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29649015--29649170	82	1.9	81	85	3	215	26	16	28	28	1.97
29649014--29649167	55	2.9	52	82	7	175	27	16	27	27	1.97
29649015--29649170	27	5.7	27	81	6	163	26	16	28	28	1.97
29649007--29649191	27	6.8	27	75	9	101	26	16	28	29	1.97
29649007--29649191	82	2.3	81	78	2	210	26	16	28	29	1.97
29655530--29655566	17	2.2	17	100	0	74	45	0	24	29	1.53
29657072--29657227	82	1.9	81	85	3	215	26	16	28	28	1.97
29657071--29657224	55	2.9	52	82	7	175	27	16	27	27	1.97
29657072--29657227	27	5.7	27	81	6	163	26	16	28	28	1.97
29657064--29657248	27	6.8	27	75	9	101	26	16	28	29	1.97
29657064--29657248	82	2.3	81	78	2	210	26	16	28	29	1.97
29658598--29658770	46	3.7	46	78	13	201	20	20	30	28	1.98
29662066--29662177	56	2.0	56	100	0	224	30	25	23	21	1.99
29677116--29677279	48	3.4	48	78	1	177	28	18	26	26	1.98
29677199--29677362	84	2.0	84	83	1	213	32	18	23	25	1.97
29680311--29680353	2	21.0	2	80	4	50	46	0	4	48	1.22
29681966--29682066	43	2.4	42	80	11	100	26	17	23	31	1.97
29692739--29692786	25	1.9	25	86	0	69	31	22	18	27	1.97
29692822--29692868	20	2.3	20	92	7	78	36	10	19	34	1.86
29692903--29692999	51	1.9	51	87	8	144	28	21	22	26	1.99
29692903--29692999	26	3.8	26	90	2	144	28	21	22	26	1.99
29698406--29698435	15	2.0	15	93	0	51	3	13	33	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29703518--29703740	40	5.7	40	87	7	262	25	21	27	25	1.99
29703518--29703773	80	3.3	78	80	11	247	26	21	27	25	1.99
29711455--29711627	40	4.3	40	91	1	249	24	20	27	27	1.99
29711476--29711660	80	2.3	80	83	4	214	27	19	26	27	1.99
29714248--29714355	26	4.2	26	93	0	189	32	7	24	36	1.83
29715950--29716090	27	5.2	26	79	11	151	18	24	22	34	1.96
29715947--29716090	54	2.7	54	92	2	236	18	24	22	34	1.96
29715969--29716108	27	5.2	26	83	5	82	20	25	20	34	1.96
29720392--29720731	46	7.6	46	77	15	288	22	27	19	30	1.98
29720484--29720552	35	2.0	35	100	0	138	21	31	17	28	1.96
29720434--29720689	81	3.0	81	90	6	359	21	29	18	30	1.97
29720515--29720731	92	2.4	92	99	0	425	23	28	18	29	1.98
29725324--29725385	25	2.5	25	94	0	106	32	20	22	24	1.98
29729524--29729589	25	2.6	25	87	0	96	28	16	21	33	1.95
29729522--29729615	25	3.8	24	78	5	80	28	21	19	30	1.97
29732846--29732905	30	2.0	30	86	0	84	40	6	25	28	1.80
29741069--29741181	43	2.7	42	83	5	156	29	24	15	30	1.96
29746109--29746170	26	2.3	27	81	10	74	35	29	8	27	1.85
29746275--29746390	28	4.2	28	86	3	157	20	23	21	34	1.97
29755595--29755619	13	1.9	13	100	0	50	28	0	0	72	0.86
29757292--29757329	8	4.8	8	86	0	58	50	21	23	5	1.69
29757292--29757332	16	2.6	16	88	0	64	48	19	24	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29762557--29762581	13	1.9	13	100	0	50	24	0	0	76	0.80
29764544--29764605	26	2.3	27	83	10	83	37	29	8	25	1.85
29764678--29764762	28	3.1	28	83	9	113	21	22	22	34	1.97
29770770--29770795	13	2.0	13	100	0	52	23	0	0	76	0.78
29772636--29772696	26	2.3	27	83	13	83	37	27	8	26	1.85
29772803--29772860	28	2.1	28	90	0	89	22	18	20	37	1.94
29778528--29778646	44	2.8	43	81	6	143	31	25	19	23	1.98
29778485--29778643	43	3.7	42	76	7	142	30	26	18	24	1.98
29783428--29783494	33	2.0	33	97	0	125	31	28	14	25	1.95
29793067--29793111	20	2.2	20	88	0	63	48	2	13	35	1.54
29793621--29793768	57	2.6	57	75	9	149	30	18	19	31	1.96
29806440--29806560	43	2.9	42	81	8	140	28	25	15	29	1.96
29809861--29809993	70	1.9	70	87	0	194	27	13	24	35	1.93
29816139--29816306	91	1.8	93	83	5	225	22	30	19	27	1.98
30588892--30588967	28	2.6	28	83	10	82	35	25	10	28	1.89
30588906--30589005	29	3.5	27	80	10	101	32	29	12	27	1.92
30596929--30597003	27	2.8	26	86	8	80	34	25	10	29	1.90
30596942--30597034	27	3.4	27	82	8	98	33	30	10	25	1.90
30603858--30603987	40	3.2	40	86	0	179	17	30	20	31	1.95
30603858--30603919	20	3.1	20	65	9	54	19	32	19	29	1.96
30606109--30606172	31	2.1	31	100	0	128	40	23	0	35	1.55
30608345--30608409	30	2.2	30	88	0	94	26	29	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30615152--30615182	4	7.5	4	92	7	53	70	0	0	29	0.87
30626504--30626533	15	2.0	15	93	0	51	50	13	23	13	1.77
30626960--30626999	20	2.0	20	95	0	71	30	22	0	47	1.52
30636263--30636504	25	9.7	25	78	1	198	38	26	15	19	1.92
30636264--30636429	50	3.3	50	90	2	253	39	27	13	19	1.89
30636264--30636476	50	4.3	49	85	7	227	38	27	15	18	1.91
30636756--30636813	26	2.2	26	93	3	98	27	20	15	36	1.93
30645377--30645601	119	1.9	120	85	6	314	25	27	22	24	2.00
30645358--30645601	40	6.1	40	85	6	309	25	27	22	25	2.00
30649573--30649735	25	6.5	25	78	4	168	39	25	14	19	1.90
30649573--30649730	50	3.2	50	93	3	273	39	26	14	19	1.90
30649590--30649805	25	8.6	25	76	2	191	37	26	16	19	1.93
30649573--30649777	100	2.1	99	84	9	265	38	26	16	19	1.92
30650033--30650090	25	2.2	27	87	9	93	25	12	17	44	1.83
30657809--30657879	26	2.7	26	86	4	72	47	18	2	30	1.63
30669561--30669602	22	1.9	23	85	9	61	23	42	0	33	1.55
30673913--30673964	27	2.0	26	85	7	70	23	19	15	42	1.89
30674003--30674058	24	2.3	24	87	6	78	14	21	23	41	1.89
30680600--30680783	40	4.6	40	83	7	160	27	27	21	23	1.99
30680603--30680783	80	2.3	80	81	9	192	26	27	22	23	1.99
30685371--30685410	21	1.9	21	84	0	53	57	0	15	27	1.38
30686466--30686613	40	3.7	39	89	3	199	28	27	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30686455--30686613	80	2.0	80	87	4	232	28	27	21	22	1.99
30689061--30689085	13	1.9	13	100	0	50	16	40	28	16	1.89
30695378--30695544	42	4.0	42	88	0	244	23	17	28	30	1.97
30695614--30695676	32	2.0	32	87	0	90	34	7	26	30	1.85
30699357--30699396	19	2.0	20	90	4	64	42	12	10	35	1.76
30699462--30699595	51	2.7	51	84	2	191	32	18	17	30	1.95
30702912--30703082	93	1.8	93	86	5	247	29	26	21	22	1.99
30708799--30708974	46	3.8	47	79	12	193	30	28	19	21	1.98
30716456--30716493	20	1.9	19	85	15	51	47	2	0	50	1.15
30723024--30723052	14	2.0	15	93	6	51	10	13	6	68	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311