Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  19  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5386221--5386392
87
2.0
87
79
8
190
30
19
17
33
1.95
5386017--5386567
206
2.7
207
88
2
813
29
21
17
31
1.96
5388645--5388733
45
2.0
45
95
0
160
31
21
19
28
1.97
5394691--5394727
15
2.5
16
87
12
53
43
10
24
21
1.84
5394747--5394776
14
2.1
14
93
0
51
46
10
6
36
1.64
5398497--5398549
19
2.9
19
77
8
56
66
1
1
30
1.13
5398733--5398792
23
2.6
23
75
12
61
61
1
5
31
1.27
5398912--5398950
13
2.9
14
84
7
53
61
2
0
35
1.10
5398905--5398963
27
2.2
26
85
8
75
61
1
1
35
1.16
5398977--5399040
3
20.3
3
73
20
51
60
1
1
35
1.15
5398902--5399040
20
7.1
20
67
21
71
58
2
2
35
1.25
5400768--5401391
78
8.0
78
86
2
869
32
19
23
24
1.98
5401331--5401559
45
5.1
45
75
10
225
31
16
26
25
1.96
5401912--5401967
18
3.5
15
81
18
60
37
10
16
35
1.83
5401910--5401981
19
3.9
19
89
10
123
37
11
15
36
1.83
5401910--5401988
35
2.2
37
86
13
121
37
10
15
36
1.81
5402180--5402221
20
2.2
19
87
8
59
11
11
11
64
1.51
5402271--5402305
18
2.0
17
88
5
52
31
0
0
68
0.90
5412685--5412732
23
2.1
23
92
0
78
37
8
33
20
1.83
5423293--5423458
85
2.0
85
85
2
226
43
7
11
37
1.70
5423771--5423811
21
2.1
20
86
13
59
58
0
0
41
0.98
5429638--5429687
19
2.6
19
100
0
100
36
12
16
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5430078--5430102
4
6.2
4
100
0
50
76
0
0
24
0.80
5431293--5431335
22
2.0
22
86
13
63
25
6
0
67
1.15
5431653--5431705
25
2.1
24
83
13
63
32
1
1
64
1.15
5431651--5431768
9
12.7
9
67
22
66
33
4
2
60
1.30
5435705--5435737
12
2.7
12
95
4
57
72
0
27
0
0.85
5438266--5438335
21
3.3
21
77
18
74
82
0
12
4
0.80
5438264--5438321
11
5.5
11
75
17
61
82
0
13
3
0.79
5439290--5439391
44
2.3
44
86
1
143
30
19
20
29
1.97
5439453--5439621
87
1.9
87
83
7
218
32
16
22
28
1.96
5439480--5440299
220
3.7
220
93
0
1327
32
17
21
27
1.96
5439869--5440055
87
2.1
89
81
11
233
32
17
22
27
1.97
5440092--5440280
87
2.1
89
82
9
219
32
17
22
26
1.96
5440648--5440698
19
2.9
17
81
13
59
37
9
17
35
1.83
5440658--5440700
19
2.1
21
91
8
72
37
9
18
34
1.83
5441289--5441329
22
2.0
22
85
9
59
14
4
9
70
1.30
5443293--5443381
28
3.2
28
83
0
115
33
16
30
19
1.94
5443293--5443393
28
3.6
28
76
11
89
33
17
29
18
1.95
5443402--5443461
28
2.1
28
87
0
84
43
15
23
18
1.87
5447812--5447931
56
2.1
56
98
0
231
45
9
23
22
1.81
5449059--5449243
40
4.6
39
82
7
196
24
23
27
24
2.00
5449059--5449241
79
2.3
80
83
7
221
24
23
27
24
2.00
5449111--5449276
79
2.1
78
80
10
187
25
21
27
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5451214--5451254
14
2.9
14
77
0
55
36
31
9
21
1.86
5456454--5456508
4
13.8
4
92
0
92
47
23
3
25
1.68
5456634--5456712
40
2.0
40
100
0
158
35
8
20
35
1.84
5457724--5457832
49
2.2
48
77
3
110
24
19
19
36
1.94
5457740--5457836
49
2.0
49
85
0
131
24
20
19
35
1.96
5458658--5458697
19
2.0
20
90
4
64
50
0
5
45
1.23
5461019--5461183
35
4.7
35
87
1
233
30
10
24
33
1.89
5461574--5461605
5
6.6
5
92
7
57
18
0
0
81
0.70
5461574--5461604
14
2.2
14
100
0
62
19
0
0
80
0.71
5466029--5466060
5
6.6
5
92
7
57
18
0
0
81
0.70
5466029--5466059
14
2.2
14
100
0
62
19
0
0
80
0.71
5466330--5466361
5
6.6
5
92
7
57
18
0
0
81
0.70
5466330--5466360
9
3.3
9
91
8
53
19
0
0
80
0.71
5473312--5473425
56
2.0
56
96
0
210
28
21
14
36
1.92
5481395--5481436
4
10.2
4
80
14
50
47
2
2
47
1.28
5482518--5482568
21
2.3
21
80
6
57
43
1
27
27
1.66
5494096--5494219
59
2.1
59
95
0
221
42
20
9
26
1.83
5494468--5494578
6
18.5
6
77
2
98
74
6
4
14
1.17
5494481--5494566
36
2.4
36
90
3
129
75
5
4
13
1.15
5494481--5494578
18
5.4
18
80
4
108
74
6
5
14
1.18
5496428--5496469
16
2.5
17
77
14
52
50
0
47
2
1.14
5501835--5502000
35
4.7
35
82
1
136
30
13
25
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5501837--5502000
70
2.3
70
86
0
220
29
13
25
31
1.94
5508220--5508251
12
2.7
12
95
0
55
46
0
3
50
1.17
5509024--5509049
13
2.0
13
100
0
52
23
23
38
15
1.92
5519081--5519242
35
4.6
35
86
1
218
30
12
24
32
1.93
5524217--5524247
4
7.8
4
100
0
62
51
22
0
25
1.48
5530595--5530691
49
2.0
49
87
0
140
26
19
17
36
1.94
5531514--5531553
19
2.0
20
95
4
73
47
0
5
47
1.24
5547869--5547926
9
7.3
9
71
28
60
36
31
10
22
1.88
5547864--5547925
14
4.1
14
76
15
61
33
30
11
24
1.90
5549501--5549671
93
1.8
93
83
2
227
23
19
26
30
1.98
5557080--5557254
46
3.8
45
74
13
176
21
20
28
29
1.98
5557077--5557247
93
1.8
93
89
0
270
21
20
28
29
1.98
5560961--5561001
14
2.9
14
77
0
55
36
31
9
21
1.86
5562140--5562241
4
25.5
4
91
0
141
46
23
4
25
1.72
5562659--5562700
19
2.2
19
91
8
68
42
0
4
52
1.22
5564218--5564408
90
2.1
90
92
0
310
39
9
17
33
1.82
5577104--5577177
4
18.5
4
94
0
130
47
24
2
25
1.65
5577930--5577993
20
3.4
20
85
10
91
37
4
3
54
1.37
5585047--5585095
10
5.0
10
83
11
57
67
0
6
26
1.14
5585108--5585146
13
2.9
13
80
3
51
43
10
0
46
1.37
5585718--5585742
13
1.9
13
100
0
50
0
12
0
88
0.53
5585760--5585943
96
1.9
97
84
1
244
33
27
13
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5591332--5591517
40
4.7
41
87
7
249
22
23
27
26
1.99
5591334--5591517
80
2.3
80
92
0
298
22
23
27
26
1.99
5599619--5599808
40
4.7
41
76
13
169
25
22
25
26
2.00
5601507--5601551
12
4.3
11
81
13
51
73
0
4
22
1.01
5601498--5601534
19
1.9
19
94
0
65
67
0
8
24
1.17
5602014--5602194
93
2.0
91
88
2
272
28
26
16
28
1.97
5609297--5609453
40
3.9
40
77
17
130
22
24
25
27
2.00
5610701--5610884
40
4.7
41
88
7
283
22
22
28
26
1.99
5610703--5610884
78
2.3
80
94
3
325
22
23
28
26
1.99
5619032--5619217
40
4.7
41
83
7
222
23
23
26
25
2.00
5619034--5619217
80
2.3
80
90
2
282
23
23
26
26
2.00
5620933--5620978
20
2.4
19
92
3
74
71
0
6
21
1.08
5621458--5621640
93
2.0
93
91
0
294
28
26
16
28
1.97
5624708--5624757
10
5.0
10
83
9
57
68
2
6
24
1.23
5624771--5624808
13
2.8
13
88
4
58
44
15
0
39
1.47
5630006--5630194
86
2.2
86
81
5
222
29
28
16
24
1.97
5630007--5630194
43
4.4
43
84
1
191
29
28
16
25
1.97
5636113--5636172
3
19.3
3
74
19
52
36
1
0
61
1.06
5636113--5636251
14
9.7
14
71
20
92
36
2
1
58
1.22
5636116--5636283
20
8.4
20
69
16
82
36
4
1
58
1.25
5636186--5636263
27
3.1
26
80
12
76
35
2
1
60
1.19
5636199--5636252
13
4.3
13
75
15
51
37
0
1
61
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5636117--5636302
50
3.9
49
72
17
117
37
3
1
58
1.23
5640317--5640346
14
2.1
14
93
0
51
36
6
10
46
1.64
5640366--5640402
15
2.5
16
87
12
53
21
24
10
43
1.84
5648425--5648979
206
2.7
207
88
3
832
31
18
20
29
1.96
5649641--5649679
21
1.9
20
84
5
51
28
2
2
66
1.18
5650966--5651045
7
11.0
7
90
6
106
25
1
1
72
0.99
5650966--5651045
22
3.7
21
85
6
106
25
1
1
72
0.99
5651633--5651675
15
3.0
15
83
6
54
46
32
0
20
1.51
5651638--5651724
22
4.0
22
69
7
52
45
29
0
24
1.53
5651699--5651743
14
3.2
14
90
0
63
48
28
0
22
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311