genome.fa.s12.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  37  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10642610--10642730	41	3.0	41	93	0	206	32	19	28	19	1.97
10643346--10643394	24	2.0	24	96	0	89	53	2	4	40	1.32
10643680--10643728	7	6.9	7	90	4	80	24	0	30	44	1.54
10643680--10643746	14	4.7	14	88	3	80	23	1	26	47	1.60
10643673--10643752	36	2.2	36	82	2	99	23	1	28	46	1.60
10643672--10643831	7	22.6	7	76	7	72	21	0	33	44	1.57
10644523--10644580	22	2.6	22	83	5	73	67	1	1	29	1.11
10644591--10644699	38	2.8	40	90	5	177	40	19	22	18	1.92
10644915--10644998	35	2.4	34	78	9	98	32	35	4	27	1.78
10657049--10657090	21	2.1	19	86	8	57	14	4	4	76	1.12
10663046--10663118	37	2.0	36	89	5	110	32	26	12	28	1.92
10665072--10665150	40	2.0	40	89	0	122	18	13	30	36	1.90
10666963--10666994	15	2.1	15	100	0	64	21	12	6	59	1.55
10670001--10670059	10	5.9	10	84	7	84	67	1	10	20	1.28
10670077--10670109	13	2.8	12	90	9	50	51	12	0	36	1.39
10672004--10672064	4	15.8	4	75	21	51	73	0	1	24	0.92
10672013--10672074	28	2.2	28	88	5	90	75	0	1	22	0.88
10672004--10672074	11	6.3	11	82	12	74	74	0	2	22	0.94
10679051--10679106	21	2.7	21	78	13	62	69	1	5	23	1.18
10679051--10679093	11	4.0	11	82	11	54	69	2	2	25	1.12
10684223--10684256	4	8.5	4	100	0	68	26	0	23	50	1.50
10689558--10689643	20	4.4	19	75	8	66	47	1	4	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10690028--10690052	2	12.5	2	100	0	50	52	0	0	48	1.00
10691590--10691614	12	2.1	12	100	0	50	48	20	16	16	1.82
10692256--10692304	19	2.6	19	71	9	55	30	0	32	36	1.58
10696828--10696897	35	2.0	35	100	0	140	37	11	22	28	1.89
10699263--10699311	19	2.6	20	78	12	59	57	12	2	28	1.46
10702957--10703002	23	2.0	23	82	0	56	30	8	19	41	1.82
10711086--10711133	23	2.1	23	84	0	60	37	22	22	16	1.94
10716255--10716302	25	2.0	24	87	4	69	58	14	8	18	1.61
10721091--10721168	29	2.7	28	84	11	104	25	15	30	28	1.96
10721121--10721451	175	1.9	176	92	0	565	30	14	23	31	1.94
10723580--10723635	28	2.0	28	93	3	96	39	21	23	16	1.92
10723738--10723801	26	2.4	26	89	2	92	26	9	26	37	1.87
10739235--10739324	45	2.0	45	91	0	144	40	4	21	34	1.73
10739464--10739502	21	1.9	20	85	15	53	58	5	2	33	1.33
10742115--10742526	224	1.8	225	86	3	607	32	15	17	34	1.91
10742608--10742802	104	1.9	103	89	1	300	33	18	20	27	1.96
10742604--10742802	50	3.8	52	80	7	233	33	18	20	28	1.96
10742980--10743038	18	3.4	17	76	19	59	15	11	0	72	1.11
10742984--10743024	9	4.3	9	93	6	64	12	12	0	75	1.05
10742984--10743066	21	4.1	19	73	15	69	19	13	0	67	1.23
10742987--10743094	5	20.6	5	72	16	76	19	17	0	62	1.32
10742987--10743094	11	10.3	11	80	6	93	19	17	0	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743011--10743088	16	4.8	16	80	4	84	21	19	0	58	1.39
10743087--10743129	20	2.2	20	87	4	61	27	9	0	62	1.25
10743286--10743411	54	2.3	55	91	2	202	26	23	19	30	1.98
10745608--10745761	37	4.3	37	86	8	228	22	18	33	25	1.97
10746665--10746700	16	2.2	17	90	5	56	11	8	0	80	0.90
10746688--10746749	5	11.6	5	80	13	70	19	20	0	59	1.38
10746708--10746749	12	3.8	11	90	9	68	19	23	0	57	1.41
10746688--10746749	21	2.9	21	81	13	72	19	20	0	59	1.38
10746731--10746785	21	2.7	20	83	13	58	27	9	0	63	1.24
10746742--10746827	22	4.0	22	75	11	81	30	5	0	63	1.17
10746753--10746847	44	2.2	43	87	5	138	28	8	0	63	1.24
10746742--10746827	21	4.1	22	77	18	94	30	5	0	63	1.17
10746871--10746980	52	2.1	53	79	5	116	29	19	18	33	1.95
10747343--10747586	50	4.8	50	78	8	260	32	17	22	27	1.96
10747343--10747589	101	2.4	101	84	6	295	32	17	22	27	1.96
10747770--10747854	11	7.8	11	74	6	66	21	18	0	60	1.37
10747771--10747849	16	4.8	16	81	9	88	21	18	0	59	1.38
10747771--10747854	5	15.6	5	75	14	69	21	19	0	59	1.38
10747847--10747886	19	2.2	19	90	4	64	30	5	0	65	1.14
10747847--10747931	21	4.2	19	73	15	64	30	7	0	62	1.22
10747844--10747948	44	2.4	45	80	9	135	30	9	0	60	1.29
10747985--10748124	53	2.6	53	80	5	138	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10748576--10748679	52	2.0	53	83	5	131	31	15	22	30	1.95
10748674--10748789	43	2.6	43	82	6	133	61	0	9	28	1.33
10748702--10748775	22	3.4	21	72	18	62	63	0	9	27	1.25
10748702--10748799	43	2.2	45	83	5	128	64	0	8	27	1.22
10748722--10748810	23	4.0	23	74	11	78	66	0	5	28	1.14
10748803--10748886	5	15.6	5	78	9	60	61	0	19	19	1.34
10748826--10748887	27	2.3	27	82	0	79	66	0	14	19	1.26
10748803--10748887	6	15.5	6	76	15	51	62	0	18	18	1.33
10749011--10749260	107	2.3	108	82	8	285	36	18	16	28	1.93
10752123--10752279	59	2.8	57	73	12	153	33	8	30	27	1.87
10759769--10759981	107	2.0	107	90	0	336	34	18	15	30	1.93
10764507--10764534	2	14.0	2	100	0	56	50	0	0	50	1.00
10766857--10766984	39	3.3	39	86	0	184	21	25	20	32	1.98
10771287--10771356	29	2.3	30	78	11	72	40	1	12	45	1.51
10774549--10774872	169	2.0	162	85	6	434	36	13	14	35	1.85
10779990--10780029	16	2.5	16	95	0	71	57	0	5	37	1.21
10783359--10783422	30	2.2	29	85	2	83	43	7	7	40	1.62
10788825--10788867	18	2.4	19	80	11	54	34	6	11	46	1.67
10790142--10790179	20	2.1	19	85	14	53	26	5	15	52	1.64
10791396--10791430	18	1.9	18	94	0	61	40	22	8	28	1.84
10791621--10791678	28	2.1	28	96	0	107	25	27	20	25	1.99
10791630--10791689	28	2.1	28	81	6	68	23	25	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10791768--10791798	12	2.6	12	94	0	53	22	41	29	6	1.78
10792638--10792795	43	3.7	42	82	2	163	44	21	14	18	1.86
10792639--10792795	85	1.8	85	82	5	201	45	21	14	19	1.85
10792622--10792820	43	4.6	43	79	7	122	43	21	16	18	1.87
10796719--10796763	6	7.3	6	87	2	63	2	57	2	37	1.23
10796795--10796833	20	1.9	21	89	5	62	33	15	20	30	1.94
10802203--10802259	30	1.9	30	88	0	87	21	19	24	35	1.96
10812887--10812929	3	14.7	3	92	4	61	39	0	0	60	0.97
10813221--10813277	24	2.4	24	93	0	96	36	5	17	40	1.72
10813477--10813508	3	10.7	3	93	0	55	31	0	3	65	1.08
10814553--10814638	45	1.9	45	88	4	129	18	24	19	37	1.94
10814795--10814900	18	5.9	18	79	3	106	35	16	13	34	1.87
10819397--10819506	35	3.1	35	73	10	107	24	22	26	26	2.00
10819364--10819506	71	2.0	71	83	2	180	24	23	25	25	2.00
10819364--10819482	36	3.3	35	75	6	105	23	25	25	26	2.00
10822556--10822639	41	2.0	41	95	0	150	53	28	3	14	1.57
10831011--10831088	41	1.9	41	89	0	120	47	16	7	28	1.74
10833226--10833332	49	2.2	49	96	0	196	35	18	23	22	1.96
10833255--10833332	24	3.2	24	71	10	86	35	17	25	20	1.95
10833230--10833310	25	3.3	25	71	13	78	34	18	22	24	1.96
10833336--10833392	23	2.4	23	77	8	62	45	24	15	14	1.83
10841640--10842105	228	2.0	229	87	1	675	23	16	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10842631--10843406	387	2.0	387	95	0	1381	29	15	17	38	1.90
10849236--10849305	22	3.1	22	77	16	56	50	1	0	48	1.09
10849255--10849309	23	2.4	24	78	9	69	45	1	0	52	1.11
10849350--10849396	20	2.4	20	77	22	55	40	2	2	55	1.24
10856085--10856188	52	2.0	50	88	3	154	35	12	13	38	1.83
10858799--10858871	36	2.0	36	100	0	146	50	19	2	27	1.61
10859831--10859894	24	2.7	23	80	9	65	53	1	0	45	1.10
10859840--10859898	24	2.4	25	83	8	77	49	1	0	49	1.11
10866647--10866751	52	2.0	51	87	5	149	36	12	13	38	1.82
10870381--10870437	24	2.4	25	79	8	73	47	1	0	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311