genome.fa.s12.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  180  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61338304--61338435	61	2.1	62	85	1	194	26	25	21	26	1.99
61338304--61338435	31	4.3	31	89	1	194	26	25	21	26	1.99
61340259--61340283	12	2.1	12	100	0	50	60	0	0	40	0.97
61342449--61342481	17	1.9	17	100	0	66	30	18	15	36	1.91
61347367--61347449	40	2.1	40	88	4	123	38	22	14	24	1.92
61350050--61350167	42	2.8	42	89	5	177	28	16	25	29	1.96
61361200--61361375	46	3.8	46	78	10	205	21	19	29	28	1.98
61364789--61364825	19	1.9	19	88	0	56	32	13	35	18	1.90
61364916--61365021	29	3.7	29	77	6	99	27	15	32	25	1.95
61365224--61365274	27	2.0	26	84	7	68	43	23	17	15	1.88
61366014--61366047	18	1.9	18	88	5	52	38	20	11	29	1.88
61374701--61374789	39	2.3	39	86	3	126	31	15	22	30	1.95
61380640--61380785	40	3.7	40	86	3	195	23	18	26	30	1.98
61395381--61395586	40	5.2	40	82	1	234	24	23	26	25	2.00
61409726--61409772	24	2.0	24	95	0	85	27	4	25	42	1.73
61411086--61411123	16	2.5	15	84	12	51	39	2	18	39	1.65
61412701--61412776	38	2.0	38	97	0	143	32	13	22	31	1.92
61413965--61414110	40	3.6	40	87	2	202	25	25	26	23	2.00
61420765--61420840	38	2.0	38	100	0	152	31	13	23	31	1.93
61422029--61422173	40	3.6	40	85	4	193	25	24	26	23	2.00
61425142--61425195	26	2.1	26	86	6	74	12	24	44	18	1.85
61430073--61430131	28	2.1	28	93	0	100	35	11	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61440249--61440273	11	2.3	11	100	0	50	0	8	0	92	0.40
61440866--61440913	17	2.8	17	81	9	53	54	12	0	33	1.38
61453604--61453672	31	2.2	31	86	0	102	47	13	7	31	1.69
61458059--61458246	40	4.7	40	83	6	222	24	27	23	24	2.00
61459429--61459665	40	5.9	40	84	3	280	24	21	27	26	1.99
61466196--61466239	21	2.1	21	100	0	88	65	4	4	25	1.30
61466351--61466426	33	2.3	33	83	0	89	25	5	0	69	1.09
61466352--61466495	11	13.3	11	68	11	75	26	3	4	65	1.26
61470983--61471012	3	10.0	3	92	0	51	33	3	0	63	1.11
61487273--61487362	47	1.9	46	88	2	135	22	21	25	31	1.98
61487286--61487411	46	2.7	46	79	8	139	23	19	24	32	1.97
61493929--61494196	46	5.7	46	76	9	208	23	29	18	29	1.98
61493929--61494195	47	5.7	45	75	9	166	23	29	18	28	1.98
61514864--61514888	12	2.1	12	100	0	50	48	0	52	0	1.00
61512332--61515803	988	3.5	996	87	5	4752	34	12	19	34	1.89
61523749--61523802	26	2.1	26	96	0	99	44	9	3	42	1.54
61523753--61523809	26	2.2	26	90	0	87	49	12	3	35	1.58
61523944--61524074	44	3.0	42	85	6	165	33	25	18	22	1.97
61534481--61534625	43	3.4	42	80	2	146	33	23	18	24	1.97
61539089--61539125	17	2.2	17	95	0	65	24	18	24	32	1.97
61540350--61540452	43	2.4	43	85	10	140	31	24	19	25	1.98
61585670--61585707	19	2.0	19	100	0	76	26	5	15	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61586261--61586426	43	3.9	42	75	9	140	27	15	24	31	1.96
61589275--61589475	42	4.6	42	72	12	174	30	22	18	28	1.97
61600156--61600309	28	5.5	28	85	0	182	31	20	20	28	1.97
61600148--61600309	84	1.9	83	86	1	225	32	19	19	29	1.96
61604212--61604323	25	4.5	25	83	0	125	26	22	20	30	1.98
61613421--61613459	17	2.3	17	95	0	69	23	5	12	58	1.54
61625343--61625747	48	8.3	48	91	3	657	30	25	6	36	1.81
61625343--61625747	98	4.2	98	95	0	697	30	25	6	36	1.81
61630101--61630158	30	2.0	30	83	10	75	29	22	10	37	1.87
61635601--61635722	46	2.6	47	79	7	122	26	22	14	36	1.93
61635718--61635742	5	5.0	5	100	0	50	0	40	20	40	1.52
61636548--61636579	16	2.0	16	100	0	64	25	0	12	62	1.30
61639878--61640035	43	3.7	42	74	10	124	23	18	26	31	1.97
61647087--61647180	42	2.2	43	83	5	111	26	17	24	31	1.97
61657401--61657482	42	2.0	41	87	2	119	24	35	19	20	1.96
61658199--61658240	17	2.4	17	92	4	66	42	11	11	33	1.78
61658605--61658674	25	2.8	25	73	4	70	24	20	24	31	1.98
61670073--61670316	59	4.2	59	87	1	328	29	30	18	22	1.97
61670073--61670316	117	2.1	118	86	2	339	29	30	18	22	1.97
61674211--61674236	12	2.2	12	100	0	52	50	7	7	34	1.60
61689879--61689925	7	6.7	7	97	0	85	31	0	53	14	1.42
61691191--61691255	34	1.9	34	90	3	105	24	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61696028--61696062	17	2.1	17	100	0	70	34	11	8	45	1.71
61699036--61699100	34	1.9	34	93	3	114	24	24	23	27	2.00
61704045--61704085	22	1.9	21	85	5	55	19	26	41	12	1.87
61720548--61720581	17	1.9	18	94	5	61	52	5	5	35	1.50
61722983--61723050	29	2.3	29	85	5	93	27	30	13	27	1.94
61722872--61723199	173	1.9	174	92	1	550	31	24	14	30	1.94
61723159--61723230	29	2.5	30	84	13	105	29	29	13	27	1.95
61722872--61723224	174	2.0	174	88	2	530	31	24	13	30	1.94
61731059--61731099	22	1.9	22	95	5	75	17	29	43	9	1.80
61732248--61732369	46	2.7	44	83	7	138	23	27	18	29	1.98
61735733--61735807	37	2.0	37	92	0	123	28	32	18	21	1.97
61735930--61736399	47	10.1	47	93	1	750	28	29	9	32	1.88
61739809--61739948	40	3.5	40	77	8	108	23	26	22	27	1.99
61740257--61740335	29	2.7	29	86	5	106	27	32	15	24	1.95
61740317--61740419	43	2.4	43	100	0	206	26	35	15	22	1.94
61742268--61742346	37	2.1	37	90	0	122	25	31	18	24	1.98
61742465--61742937	47	10.1	47	95	0	786	28	30	9	32	1.88
61747971--61748158	93	2.0	93	97	0	358	37	14	11	36	1.82
61748435--61748473	18	2.2	18	100	0	78	38	20	0	41	1.53
61749219--61749295	27	2.9	26	86	3	100	38	19	24	16	1.92
61749454--61749517	22	2.9	22	77	9	67	31	21	25	21	1.98
61749947--61750303	81	4.4	80	85	2	426	25	19	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61749946--61750276	27	12.3	27	84	1	385	24	19	18	37	1.94
61750260--61750464	27	7.7	27	82	5	211	30	8	20	40	1.82
61749974--61750336	54	6.8	52	77	10	254	25	17	17	38	1.92
61750204--61750464	54	4.9	54	79	4	244	29	10	19	40	1.85
61766948--61766990	20	2.2	20	86	0	59	65	4	0	30	1.13
61769600--61769643	22	2.1	21	91	8	72	59	18	13	9	1.60
61769604--61769650	20	2.2	21	85	11	60	63	12	12	10	1.52
61771584--61771795	46	4.6	46	73	15	168	25	17	30	25	1.98
61781918--61781942	13	1.9	13	100	0	50	32	0	0	68	0.90
61782010--61782194	104	1.8	99	82	12	232	51	14	4	30	1.61
61788834--61788866	17	2.0	17	88	5	50	15	0	3	81	0.80
61788814--61788862	26	2.0	25	88	11	75	20	0	4	75	0.96
61790983--61791081	45	2.2	45	88	0	153	36	12	24	27	1.91
61792459--61792732	46	6.0	46	88	2	354	22	23	13	40	1.89
61794587--61794613	13	2.1	13	100	0	54	77	0	0	22	0.76
61794595--61794645	26	2.0	26	88	7	77	60	1	0	37	1.08
61797653--61797792	51	2.7	52	94	1	246	32	15	26	26	1.95
61797653--61797832	51	3.5	52	88	4	224	31	16	26	26	1.96
61800328--61800363	18	2.0	18	89	10	56	55	0	5	38	1.23
61800863--61800924	30	2.1	30	84	0	79	46	1	32	19	1.59
61804283--61804460	52	3.5	50	85	8	227	29	14	28	27	1.95
61808181--61808253	34	2.1	34	80	9	78	36	5	4	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61818927--61818967	16	2.3	19	88	12	61	46	21	0	31	1.52
61820750--61820843	45	2.1	45	97	0	179	29	24	20	25	1.99
61822937--61822998	11	5.6	11	100	0	124	25	8	0	66	1.19
61824110--61824206	42	2.3	42	87	0	140	28	14	25	30	1.95
61827088--61827172	33	2.5	34	84	5	120	32	25	16	24	1.96
61834219--61834283	34	1.9	34	90	0	103	35	26	10	27	1.90
61834844--61834897	20	2.7	20	85	2	63	14	37	24	24	1.93
61840947--61841027	42	1.9	42	82	9	103	29	17	23	29	1.97
61860757--61860839	27	3.1	27	78	0	85	21	26	12	39	1.88
61864063--61864103	21	2.0	20	85	9	55	68	14	2	14	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311