genome.fa.s12.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  145  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49272339--49272475	37	3.7	36	91	3	211	25	19	30	24	1.98
49273745--49274296	40	13.8	40	92	0	890	26	22	26	24	2.00
49278068--49278300	47	5.0	47	89	0	331	33	11	27	27	1.91
49278093--49278215	22	5.3	22	63	18	61	33	13	27	26	1.93
49278463--49278680	37	5.9	37	91	1	348	24	18	31	25	1.97
49289440--49289522	31	2.7	31	92	3	143	27	25	18	28	1.98
49290602--49290675	27	2.7	27	82	12	89	18	16	24	40	1.90
49290720--49290795	40	1.9	40	91	0	125	32	9	21	36	1.85
49290759--49290886	27	4.7	27	82	5	136	28	7	20	42	1.80
49290918--49291009	27	3.4	27	89	0	139	41	8	22	27	1.83
49294247--49294292	20	2.3	20	100	0	92	21	36	23	17	1.94
49294247--49294303	20	2.8	20	91	2	78	19	36	22	21	1.95
49299424--49299449	11	2.4	11	100	0	52	11	15	30	42	1.82
49299546--49299680	41	3.3	41	89	1	191	31	22	26	20	1.98
49300294--49300342	24	2.0	24	100	0	98	53	0	4	42	1.20
49300871--49300922	14	3.8	13	77	12	52	61	3	0	34	1.14
49304553--49304606	6	8.7	6	76	15	56	20	1	3	74	1.07
49304686--49304715	13	2.4	12	89	10	51	10	0	0	90	0.47
49304722--49304863	43	3.3	43	90	2	223	23	21	31	23	1.98
49313715--49313827	27	4.2	26	81	8	118	38	22	22	17	1.94
49313715--49313827	55	2.1	54	83	5	138	38	22	22	17	1.94
49313929--49313976	25	1.9	25	83	8	62	25	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49315243--49315313	24	3.0	24	93	0	115	25	36	1	36	1.65
49319112--49319185	29	2.6	29	82	4	87	25	32	16	25	1.96
49327205--49327278	29	2.6	29	86	4	96	25	31	16	27	1.96
49337282--49337340	31	1.9	31	85	0	82	22	8	15	54	1.68
49337663--49337711	20	2.3	23	86	10	68	69	6	4	20	1.27
49340482--49340511	6	5.0	6	95	0	51	50	3	0	46	1.18
49340487--49340530	12	3.3	13	84	12	54	56	0	0	43	0.99
49342734--49342793	25	2.5	23	75	17	59	60	0	40	0	0.97
49343328--49344479	142	8.1	142	84	8	1402	58	7	5	27	1.50
49343328--49344479	286	4.0	287	85	7	1555	58	7	5	27	1.50
49350756--49350801	25	1.9	23	82	8	56	63	15	2	19	1.41
49350997--49351051	27	2.0	27	96	0	101	9	38	30	21	1.85
49352041--49352069	13	2.2	13	100	0	58	44	0	0	55	0.99
49354945--49355129	40	4.6	40	96	1	327	25	28	23	22	1.99
49362953--49363135	40	4.6	40	90	5	275	26	26	23	23	2.00
49362953--49363139	78	2.4	79	90	5	290	26	26	22	24	2.00
49365074--49365180	54	2.0	54	96	0	196	23	10	16	49	1.76
49365929--49366121	34	5.6	34	89	0	269	33	22	16	27	1.95
49366443--49366475	16	1.9	18	88	11	52	33	24	0	42	1.55
49370507--49370617	38	2.9	38	70	8	98	31	27	19	20	1.97
49371708--49371751	17	2.4	18	88	7	63	13	9	4	72	1.24
49375416--49375454	19	2.1	19	100	0	78	43	0	5	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49375420--49375464	19	2.4	19	88	7	65	44	0	2	53	1.13
49384270--49384367	27	3.5	28	88	5	128	32	28	13	25	1.93
49392349--49392418	28	2.5	28	85	2	104	30	30	15	24	1.96
49396226--49396316	29	3.2	29	80	6	89	28	27	14	29	1.95
49397658--49397782	46	2.7	46	94	0	214	20	23	28	28	1.99
49400104--49400159	27	2.1	27	100	0	112	42	30	8	17	1.80
49404996--49405025	7	4.4	7	91	8	53	30	0	0	70	0.88
49404996--49405025	13	2.2	13	94	5	51	30	0	0	70	0.88
49406579--49406620	20	2.1	20	86	8	59	52	7	7	33	1.56
49408515--49408671	43	3.7	43	82	3	192	21	17	29	31	1.96
49413595--49413620	13	2.0	13	100	0	52	15	23	38	23	1.92
49414704--49414798	29	3.3	28	67	14	68	31	14	26	27	1.95
49414818--49414883	28	2.4	28	84	0	96	33	16	21	28	1.95
49414911--49415112	109	1.9	109	91	0	332	29	19	23	27	1.98
49418092--49418177	40	2.2	39	83	6	111	37	32	13	16	1.88
49418102--49418177	40	1.9	40	88	0	116	36	31	14	17	1.90
49424264--49424303	20	2.0	20	90	5	62	40	17	10	32	1.83
49425086--49425161	40	1.9	40	86	0	107	35	32	14	17	1.90
49428343--49428482	57	2.4	57	78	5	131	28	22	20	28	1.98
49429462--49429549	44	2.0	44	100	0	176	13	18	20	47	1.82
49431244--49431268	6	4.2	6	100	0	50	0	32	0	68	0.90
49434089--49434142	20	2.6	21	91	2	83	27	31	7	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49437624--49437687	31	2.1	31	90	0	101	25	23	14	37	1.92
49437907--49438003	25	3.8	26	89	5	146	30	21	22	24	1.99
49438050--49438096	20	2.3	20	100	0	94	34	19	10	36	1.86
49444503--49444529	14	1.9	14	100	0	54	37	25	14	22	1.93
49449964--49450021	29	2.0	29	83	6	73	65	1	24	8	1.30
49451822--49451904	41	2.0	41	100	0	166	34	12	9	43	1.75
49455512--49455571	21	2.8	22	79	5	59	75	8	8	8	1.21
49459819--49459860	19	2.2	19	86	0	57	64	0	4	30	1.14
49467290--49467558	48	5.6	48	80	3	292	29	27	16	26	1.97
49467328--49467558	96	2.4	97	87	1	322	29	27	16	27	1.97
49467286--49467558	144	1.9	143	83	4	352	29	27	16	26	1.97
49471570--49471662	42	2.2	42	86	7	127	32	15	21	31	1.94
49477449--49477484	18	2.0	18	94	0	63	41	5	13	38	1.68
49479127--49479225	43	2.3	42	86	3	144	29	15	26	29	1.96
49480870--49480932	28	2.2	28	91	0	99	19	44	17	19	1.87
49481933--49482149	49	4.5	49	73	11	173	23	27	22	26	2.00
49482116--49482290	46	3.8	46	76	6	163	24	25	20	30	1.98
49482116--49482290	94	1.9	94	84	2	235	24	25	20	30	1.98
49482212--49482300	46	1.9	46	90	0	142	24	25	20	29	1.99
49489922--49490046	48	2.7	46	86	5	153	23	25	20	31	1.98
49496294--49496825	47	11.1	47	89	4	706	32	12	29	26	1.92
49496439--49496513	23	3.2	23	62	23	57	29	10	32	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49496294--49496825	145	3.7	145	90	3	804	32	12	29	26	1.92
49496294--49496825	196	2.8	193	89	4	774	32	12	29	26	1.92
49496635--49496709	23	3.2	23	66	23	66	30	10	30	28	1.90
49496615--49496688	22	3.2	22	64	17	60	32	13	29	24	1.93
49497059--49497180	37	3.3	37	87	1	145	22	14	31	31	1.94
49498819--49498894	24	3.4	24	72	23	92	40	9	5	44	1.59
49498846--49498907	19	3.0	19	68	28	54	38	9	4	46	1.58
49498822--49498907	43	2.0	43	100	0	172	39	9	4	46	1.57
49501574--49501650	26	3.0	26	100	0	154	33	3	3	58	1.35
49506660--49506930	47	5.7	47	70	14	168	28	17	30	24	1.97
49514331--49514504	46	3.7	46	81	4	206	25	21	31	22	1.98
49515644--49515670	13	2.1	13	100	0	54	14	37	33	14	1.88
49517118--49517176	21	2.9	21	92	2	93	15	32	28	23	1.95
49520761--49520931	46	3.7	46	78	6	175	28	19	29	23	1.98
49523115--49523297	49	3.6	48	82	7	204	28	27	15	27	1.96
49523115--49523292	52	3.5	52	87	4	222	28	28	15	28	1.96
49526723--49526860	44	3.2	42	82	7	109	31	24	18	24	1.98
49526699--49526860	43	3.8	41	78	8	146	32	25	18	24	1.97
49528394--49528635	39	6.1	39	81	11	228	24	26	22	26	2.00
49528414--49528635	118	1.9	119	82	8	283	24	26	22	26	2.00
49528394--49528635	79	3.1	78	79	10	217	24	26	22	26	2.00
49536349--49536474	38	3.3	37	84	10	107	26	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49536364--49536563	38	5.2	36	83	11	190	25	27	22	26	2.00
49547130--49547334	27	7.6	27	84	5	243	26	15	27	30	1.96
49547131--49547334	109	1.9	108	87	5	304	26	15	27	30	1.96
49547130--49547334	55	3.8	54	80	5	243	26	15	27	30	1.96
49554913--49555117	27	7.6	27	84	4	243	26	15	28	29	1.96
49561246--49561550	40	7.6	40	78	7	289	23	31	14	30	1.94
49561246--49561530	80	3.6	80	88	0	392	24	31	13	30	1.94
49564126--49564254	46	2.8	46	90	0	195	29	28	21	20	1.98
49568714--49568798	27	3.2	26	74	3	80	40	18	20	21	1.92
49569031--49569118	27	3.3	27	79	4	97	29	12	17	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311