Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  217  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74260354--74260384
16
1.9
16
93
0
53
51
0
19
29
1.47
74260350--74260392
16
2.7
16
79
13
52
53
0
20
25
1.46
74260649--74260709
22
2.8
23
83
13
76
49
1
0
49
1.10
74260670--74260722
12
4.0
14
75
18
51
50
0
0
49
1.00
74261397--74261422
7
3.7
7
100
0
52
15
30
42
11
1.82
74264699--74264788
46
2.0
46
88
0
135
38
13
18
28
1.89
74268060--74268114
21
2.7
20
81
13
58
38
1
1
58
1.20
74268072--74268154
39
2.1
39
82
8
96
40
0
3
55
1.17
74270162--74270215
28
1.9
28
85
7
74
27
5
0
66
1.13
74270162--74270209
15
3.4
14
80
11
53
31
4
0
64
1.12
74273734--74273905
43
4.0
43
78
6
170
32
26
18
22
1.97
74278562--74278623
31
2.0
31
96
0
115
16
14
37
32
1.89
74288413--74288798
193
2.0
193
100
0
772
27
23
13
34
1.93
74304369--74304437
29
2.4
30
82
7
97
18
10
24
46
1.80
74305831--74306058
90
2.6
87
78
8
234
34
9
22
33
1.87
74306942--74306997
29
1.9
29
82
7
69
39
17
8
33
1.81
74318720--74318762
22
2.0
22
85
0
59
67
0
0
32
0.91
74318714--74318772
20
3.1
19
77
20
61
69
1
0
28
0.98
74318716--74318772
28
2.0
28
80
12
64
70
1
0
28
0.98
74328027--74328064
10
3.8
10
96
0
67
65
0
10
23
1.23
74328024--74328072
20
2.7
17
77
17
53
65
0
10
24
1.23
74330581--74330665
40
2.1
40
86
4
118
51
12
5
29
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74337856--74337900
20
2.2
20
96
0
81
28
4
6
60
1.42
74340736--74340877
21
6.9
21
71
3
83
19
23
16
40
1.90
74340736--74340883
42
3.6
42
76
5
140
18
24
16
41
1.90
74348107--74348140
15
2.3
15
89
0
50
61
0
2
35
1.11
74351464--74351499
16
2.2
16
90
0
54
47
0
2
50
1.15
74354733--74354780
22
2.2
22
85
7
62
6
10
16
66
1.41
74362206--74362238
14
2.4
14
94
0
57
36
15
15
33
1.88
74373714--74373849
62
2.2
60
85
7
186
33
18
11
36
1.87
74374010--74374125
60
1.9
59
82
6
144
40
11
13
34
1.81
74374039--74374155
60
2.0
60
89
6
184
39
11
11
37
1.78
74380228--74380260
12
2.8
12
90
4
50
63
9
15
12
1.51
74382640--74382832
28
7.3
27
80
11
206
38
15
23
22
1.92
74382641--74382832
52
3.7
52
85
8
216
39
15
22
22
1.92
74382633--74382785
80
1.9
80
95
0
279
39
14
23
22
1.90
74382642--74382820
80
2.3
79
88
5
258
40
15
21
22
1.91
74382856--74383002
50
2.9
51
89
6
228
32
13
24
29
1.93
74390751--74390869
51
2.3
53
89
4
179
40
21
21
17
1.92
74390992--74391031
20
2.0
20
85
9
55
35
12
5
47
1.63
74392102--74392177
20
4.4
17
72
21
61
51
5
0
43
1.24
74392286--74392330
16
2.9
16
83
3
56
57
0
0
42
0.98
74396921--74396987
22
3.3
21
68
23
63
29
22
2
44
1.67
74396913--74396996
38
2.2
38
95
0
150
29
21
2
46
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74398335--74398407
2
36.5
2
100
0
146
0
0
49
50
1.00
74403577--74403609
3
11.3
3
93
6
59
69
0
0
30
0.88
74408691--74408731
21
1.9
22
90
5
66
39
0
0
60
0.96
74408743--74408807
22
3.1
21
81
14
82
43
0
1
55
1.09
74408727--74408795
21
3.3
22
77
15
67
33
1
1
63
1.12
74409852--74409909
26
2.1
26
81
15
64
55
1
0
43
1.10
74409862--74409914
25
2.1
25
82
6
63
50
1
0
47
1.12
74416188--74416222
18
1.9
18
94
0
61
31
25
14
28
1.95
74422515--74422549
18
1.9
18
94
0
61
28
14
25
31
1.95
74428042--74428076
18
1.9
18
94
0
61
28
14
25
31
1.95
74432884--74432925
2
21.0
2
100
0
84
0
0
50
50
1.00
74440627--74440698
29
2.5
29
80
13
85
54
5
8
31
1.54
74440912--74440957
22
2.0
23
87
4
67
28
0
0
71
0.86
74440926--74440962
19
2.1
19
90
10
60
29
0
0
70
0.88
74442503--74442565
27
2.4
27
86
7
85
34
3
3
58
1.30
74446225--74446315
41
2.2
41
94
3
157
32
16
1
49
1.53
74452762--74452803
21
1.9
21
85
9
57
73
0
0
26
0.83
74453830--74453855
6
4.3
6
100
0
52
19
0
0
80
0.71
74454825--74454877
18
3.1
16
73
21
54
56
5
30
7
1.50
74455721--74455894
71
2.5
70
81
5
206
47
8
8
35
1.65
74458611--74458651
19
2.1
20
86
4
57
68
0
2
29
1.03
74459611--74459650
11
3.6
11
82
0
53
20
10
10
60
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74459874--74459907
12
2.8
12
90
0
50
67
0
0
32
0.91
74462662--74462699
20
2.0
20
89
5
60
42
2
13
42
1.57
74467271--74467330
21
2.8
21
70
7
50
41
15
3
40
1.63
74467269--74467327
11
5.5
11
75
4
57
42
16
3
37
1.66
74467450--74467583
48
2.8
47
86
5
180
32
10
5
51
1.60
74468572--74468604
14
2.3
15
85
15
52
27
0
12
60
1.32
74472678--74473183
126
4.0
126
85
2
612
29
18
15
36
1.92
74473240--74473384
66
2.3
62
79
11
145
46
15
2
35
1.60
74473718--74473796
38
2.1
39
88
7
117
44
20
0
35
1.52
74475138--74475169
7
4.6
7
92
0
55
81
3
0
15
0.82
74479551--74479584
15
2.2
16
89
5
52
0
14
0
85
0.60
74480003--74480075
22
3.2
22
67
17
67
24
6
6
61
1.46
74479989--74480090
47
2.2
47
100
0
204
22
5
8
62
1.46
74481540--74481577
17
2.1
19
85
9
53
28
0
13
57
1.36
74481595--74481637
17
2.5
17
85
7
52
30
0
2
67
1.03
74482482--74482525
21
2.1
21
100
0
88
43
13
13
29
1.83
74487066--74487138
24
3.1
24
72
7
78
50
6
1
41
1.37
74492462--74492503
21
2.0
21
100
0
84
33
14
19
33
1.91
74499095--74499125
2
15.5
2
100
0
62
51
0
0
48
1.00
74504354--74504387
15
2.4
14
90
9
52
52
2
5
38
1.41
74505168--74505246
31
2.5
32
89
4
124
49
10
6
34
1.62
74514035--74514063
2
15.0
2
92
7
51
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74516027--74516095
31
2.3
30
82
5
95
28
18
17
34
1.94
74521461--74521512
21
2.4
21
81
18
70
38
5
7
48
1.56
74521696--74521745
25
2.0
25
100
0
100
36
12
4
48
1.59
74524203--74524337
40
3.4
40
90
2
218
22
21
25
29
1.99
74526878--74526942
17
3.8
16
75
13
58
66
0
4
29
1.12
74526878--74526947
26
2.7
25
82
8
86
64
0
4
31
1.13
74526885--74526944
9
6.8
9
74
11
52
65
0
5
30
1.14
74527631--74527660
8
3.6
8
91
8
51
56
0
0
43
0.99
74530215--74530266
24
2.2
24
89
0
77
55
9
1
32
1.43
74531192--74531238
23
2.0
23
100
0
94
29
21
14
34
1.93
74531645--74531718
23
3.3
23
88
3
114
33
25
20
20
1.97
74531806--74531834
8
3.6
8
100
0
58
34
27
13
24
1.93
74538522--74538620
23
4.3
23
97
0
180
32
26
21
20
1.97
74538707--74538735
8
3.6
8
100
0
58
34
27
13
24
1.93
74541218--74541269
24
2.2
24
89
0
77
55
9
1
32
1.43
74544948--74544989
18
2.3
18
87
0
57
66
2
9
21
1.32
74545877--74545909
13
2.4
14
90
5
50
27
0
0
72
0.85
74545926--74545990
23
2.6
25
73
9
71
38
1
4
55
1.30
74545950--74546045
34
2.8
32
84
9
111
38
2
3
56
1.27
74546011--74546075
22
3.0
22
83
16
84
43
1
0
55
1.09
74546014--74546069
20
2.7
21
82
17
73
42
1
0
55
1.10
74546014--74546078
21
3.2
20
79
18
71
46
1
0
52
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74546217--74546260
20
2.2
20
83
0
52
56
0
4
38
1.20
74546276--74546312
19
1.9
19
89
10
58
48
0
2
48
1.15
74546290--74546337
16
3.1
16
82
8
55
56
0
2
41
1.11
74546312--74546371
20
2.9
20
85
5
75
65
1
1
31
1.13
74546443--74546531
21
3.9
21
70
18
54
49
1
2
47
1.21
74546618--74546700
14
5.3
15
71
24
64
59
1
0
39
1.05
74546634--74546673
21
2.0
20
90
5
62
62
0
0
37
0.95
74546635--74546702
29
2.3
29
85
10
84
60
1
0
38
1.06
74546532--74546773
133
1.8
131
85
7
337
55
3
2
38
1.31
74546741--74546812
21
3.5
21
78
14
71
54
1
0
44
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311