genome.fa.s12.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  111  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36718895--36719130	81	2.9	81	86	5	316	29	8	20	42	1.80
36718895--36719258	27	13.5	27	85	2	252	32	8	20	39	1.83
36725414--36725544	65	2.0	65	95	0	235	22	15	19	42	1.88
36726914--36726984	34	2.1	35	82	10	85	42	11	26	19	1.85
36728137--36728166	14	2.1	14	100	0	60	26	0	40	33	1.57
36732327--36732427	30	3.2	30	63	26	73	23	16	16	42	1.88
36732310--36732440	65	2.0	65	98	0	253	25	15	17	41	1.88
36735173--36735311	46	3.0	46	86	3	174	23	22	15	39	1.91
36749344--36749374	12	2.6	12	100	0	62	12	51	25	9	1.70
36761724--36761891	80	2.1	80	81	5	189	27	27	19	25	1.99
36761764--36761944	80	2.3	80	83	9	210	28	27	20	23	1.99
36761761--36761944	40	4.6	40	81	7	187	28	27	20	23	1.99
36855062--36855334	40	6.9	40	76	10	217	24	28	22	24	2.00
36855193--36855334	39	3.6	39	78	12	148	22	28	23	26	1.99
36855640--36855718	29	2.7	29	86	5	106	27	32	15	24	1.95
36855747--36855833	42	2.0	43	97	2	167	27	34	14	22	1.94
36857697--36857775	37	2.1	37	88	4	115	25	30	18	25	1.98
36857894--36858339	47	9.4	47	95	1	759	29	30	8	32	1.87
36862385--36862446	31	2.0	31	90	0	97	38	17	8	35	1.80
36863030--36863087	30	1.9	30	89	0	89	29	22	6	41	1.80
36866480--36866504	13	1.9	13	100	0	50	4	48	24	24	1.68
36872489--36872664	46	3.8	46	76	4	183	21	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36872486--36872657	93	1.8	93	91	0	281	22	20	29	27	1.99
36881514--36881599	34	2.5	34	77	3	102	26	22	23	27	1.99
36883105--36883148	21	2.1	21	86	0	61	25	25	15	34	1.95
36883215--36883258	22	2.0	23	90	4	72	25	2	50	22	1.61
36892008--36892189	49	3.7	49	82	2	238	29	25	18	26	1.98
36891993--36892187	100	2.0	100	91	0	318	29	23	19	27	1.98
36892422--36892475	27	2.0	27	85	7	74	37	14	9	38	1.79
36898523--36898641	55	2.2	55	85	0	157	16	25	29	28	1.97
36899648--36899699	25	2.1	25	100	0	104	19	19	19	42	1.90
36903990--36904311	48	6.7	49	75	5	226	25	24	19	30	1.98
36903991--36904310	96	3.3	95	80	3	266	25	24	19	30	1.98
36910009--36910067	31	1.9	31	92	0	100	32	23	15	28	1.95
36910010--36910078	31	2.3	31	87	2	95	31	26	13	28	1.93
36910273--36910367	25	3.8	25	86	5	104	25	21	24	29	1.99
36910812--36910854	17	2.5	17	100	0	86	20	27	32	18	1.96
36911311--36911396	27	3.1	27	79	14	95	36	9	16	38	1.81
36911398--36911497	27	3.7	27	77	4	121	29	7	21	43	1.78
36911373--36911489	54	2.2	54	84	6	148	29	6	20	42	1.78
36911529--36911620	27	3.4	27	86	0	121	43	6	20	29	1.77
36913905--36913987	31	2.7	31	94	3	143	28	26	15	28	1.96
36914200--36914251	25	2.1	25	85	3	70	30	17	19	32	1.95
36915178--36915256	27	2.9	27	77	7	88	31	8	18	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36915158--36915365	81	2.6	81	76	7	192	30	9	20	39	1.84
36915232--36915377	27	5.4	26	72	7	112	31	8	20	39	1.83
36915231--36915335	54	1.9	55	86	3	151	30	6	20	41	1.78
36915371--36915442	26	2.7	26	80	2	72	47	8	18	26	1.76
36918460--36918487	9	3.1	9	100	0	56	46	32	0	21	1.52
36921058--36921226	27	6.3	27	85	0	221	39	18	8	32	1.82
36921058--36921209	54	2.8	54	93	0	259	40	19	8	30	1.82
36923950--36924006	27	2.1	27	93	0	96	42	19	7	31	1.78
36923955--36924018	27	2.4	27	89	0	92	39	25	9	26	1.86
36924000--36924074	27	2.8	27	70	0	78	36	22	9	32	1.86
36924056--36924208	27	5.7	27	76	6	157	36	19	18	24	1.95
36924057--36924206	54	2.8	54	85	6	214	36	20	19	24	1.95
36924054--36924224	54	3.2	53	81	6	191	37	18	19	24	1.94
36924054--36924225	81	2.1	81	81	4	211	37	18	19	24	1.94
36924469--36924519	27	1.9	26	84	4	66	19	27	17	35	1.94
36924639--36924792	6	24.8	6	70	18	102	18	18	14	48	1.81
36924661--36924750	19	4.8	19	83	8	112	17	20	15	46	1.84
36924639--36924753	25	4.4	25	68	12	86	19	19	14	46	1.83
36924661--36924731	37	1.9	37	88	0	106	16	19	16	46	1.84
36924639--36924762	56	2.1	57	86	8	169	18	18	15	47	1.83
36924717--36924780	31	2.1	31	84	0	83	18	18	14	48	1.81
36924724--36924792	31	2.2	31	89	0	102	17	17	13	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36945347--36945612	93	2.9	94	79	12	273	30	19	26	23	1.98
36948633--36948798	30	5.2	30	66	25	90	24	16	16	42	1.89
36948616--36948811	65	3.0	65	95	0	356	24	15	17	41	1.89
36948663--36948768	35	3.2	35	67	26	102	26	15	16	41	1.88
36954878--36954947	27	2.6	27	95	2	113	31	28	12	27	1.93
36954878--36954975	28	3.5	28	90	2	135	31	28	13	26	1.94
36962014--36962041	10	2.8	10	100	0	56	10	10	7	71	1.31
36962351--36962375	3	8.3	3	100	0	50	32	0	0	68	0.90
36966638--36966730	46	2.0	46	95	0	168	50	19	9	20	1.75
36976405--36976581	46	3.9	44	75	11	167	24	20	27	27	1.99
36976402--36976573	93	1.8	93	87	2	256	23	20	28	26	1.99
36981224--36981361	29	4.8	29	89	4	165	28	28	16	25	1.97
36983098--36983155	29	2.0	29	96	0	107	36	6	15	41	1.74
36992060--36992118	29	2.0	29	100	0	118	20	6	33	38	1.79
36992523--36992726	53	3.8	53	76	8	180	38	17	23	20	1.93
36998430--36998600	46	3.7	45	80	7	175	27	19	29	23	1.98
36998430--36998643	46	4.6	45	76	15	170	27	18	28	24	1.98
36998632--36998744	50	2.3	49	89	4	181	27	20	28	23	1.99
37010802--37010927	47	2.7	46	80	11	150	27	16	30	25	1.97
37012053--37012077	13	1.9	13	100	0	50	24	28	48	0	1.52
37016075--37016158	43	2.0	43	92	0	141	19	21	33	26	1.97
37017279--37017315	16	2.3	16	100	0	74	37	5	24	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37026896--37026930	15	2.4	14	86	9	52	54	0	5	40	1.24
37027198--37027254	26	2.2	26	78	6	62	52	0	3	43	1.18
37034701--37034869	48	3.6	48	79	3	207	30	17	27	24	1.97
37040900--37040987	24	3.7	24	90	0	131	37	30	13	18	1.89
37043821--37044031	46	4.6	46	88	2	280	38	14	25	20	1.91
37043813--37044031	93	2.4	91	83	3	285	39	14	25	21	1.90
37045874--37046099	40	5.7	40	82	6	235	26	27	22	23	1.99
37045874--37046097	120	1.9	120	82	3	281	25	28	21	24	1.99
37049738--37049971	40	5.9	39	88	2	306	25	23	27	23	2.00
37058196--37058345	38	3.9	38	86	1	192	33	28	20	18	1.95
37058196--37058345	78	1.9	76	85	2	201	33	28	20	18	1.95
37058205--37058375	38	4.4	38	85	4	182	32	28	19	19	1.97
37058210--37058373	78	2.1	78	83	6	199	30	28	20	20	1.98
37061826--37061896	25	2.9	25	89	2	99	23	22	22	30	1.99
37074568--37074602	11	3.3	11	88	4	54	80	0	5	14	0.89
37074572--37074602	16	1.9	16	93	0	53	80	0	6	12	0.89
37074568--37074651	11	7.7	11	69	14	50	75	1	7	16	1.09
37074567--37074631	28	2.4	28	82	10	80	73	0	10	15	1.08
37076239--37076289	26	2.0	26	96	0	93	33	7	21	37	1.82
37077469--37077498	8	3.8	8	90	0	51	43	26	26	3	1.70
37077887--37078082	54	3.6	54	94	1	322	19	23	21	35	1.96
37077907--37078082	27	6.5	27	79	11	200	19	23	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077888--37078100	27	7.9	27	76	12	197	20	23	20	35	1.96
37083293--37083347	26	2.2	26	96	3	103	30	7	25	36	1.83
37086463--37086609	40	3.7	40	83	5	120	25	27	21	25	2.00
37086509--37086689	80	2.3	80	83	9	219	27	27	20	23	1.99
37086506--37086689	40	4.6	40	81	7	196	28	27	20	23	1.99
37094305--37094451	40	3.7	40	83	5	120	25	27	21	25	2.00
37094351--37094531	80	2.3	80	83	9	219	27	27	20	23	1.99
37094348--37094531	40	4.6	40	81	7	196	28	27	20	23	1.99
37108351--37108578	50	4.6	49	79	11	205	32	25	16	26	1.96
37108344--37108578	101	2.4	99	81	4	258	31	24	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311