genome.fa.s12.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  179  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60948057--60948142	42	2.0	42	97	0	163	30	16	12	40	1.86
60952168--60952280	49	2.3	49	80	7	122	49	7	14	29	1.69
60963039--60963332	50	5.8	50	78	4	279	30	25	18	26	1.98
60963100--60963281	101	1.8	101	91	0	301	28	24	19	26	1.99
60969904--60969941	20	1.9	20	88	0	58	36	10	5	47	1.61
60979467--60979507	20	2.0	21	90	4	66	75	0	24	0	0.80
60981434--60981717	46	6.0	46	83	8	309	38	15	24	21	1.93
60981447--60981560	56	2.0	56	96	0	210	35	16	24	22	1.95
60988901--60988931	16	1.9	16	93	0	53	35	22	0	41	1.54
60988898--60988937	20	2.0	20	85	0	53	37	22	0	40	1.54
60989123--60989365	53	4.7	52	77	9	198	21	24	18	35	1.96
60989170--60989360	108	1.8	103	86	5	274	22	24	18	34	1.96
60991902--60991954	21	2.5	21	81	0	70	35	35	5	22	1.78
60992361--60992436	31	2.5	32	89	4	95	36	2	17	43	1.63
60994197--60994235	19	2.1	19	100	0	78	48	5	10	35	1.59
60995037--60995067	12	2.6	12	94	0	53	74	0	25	0	0.82
60995717--60995753	19	2.0	19	89	5	58	43	0	18	37	1.51
60997830--60997855	12	2.2	12	100	0	52	50	7	15	26	1.71
61000895--61001052	68	2.3	65	81	11	176	32	15	29	22	1.95
61019680--61019757	38	2.1	38	95	0	138	33	16	8	41	1.80
61026827--61026864	17	2.2	18	85	4	51	34	0	10	55	1.34
61026852--61026890	18	2.2	18	90	0	60	25	2	10	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61034020--61034101	30	2.7	30	92	0	137	29	8	28	34	1.87
61040335--61040375	6	6.8	6	94	0	55	0	12	12	75	1.05
61042873--61042923	9	5.4	9	79	9	57	35	0	41	23	1.55
61049909--61049951	10	4.4	10	88	2	61	0	9	2	88	0.60
61049918--61049950	14	2.3	15	94	5	59	0	9	0	90	0.44
61067736--61067796	26	2.3	26	88	0	86	49	22	3	24	1.65
61087601--61087650	10	4.8	10	80	9	55	38	2	4	56	1.30
61095905--61096080	46	3.8	46	77	12	207	21	21	27	29	1.98
61099253--61099278	12	2.2	12	100	0	52	61	0	23	15	1.33
61103345--61103384	20	2.0	20	100	0	80	25	10	10	55	1.64
61116790--61116913	55	2.3	55	82	2	160	22	31	23	22	1.98
61122725--61122749	13	1.9	13	100	0	50	20	40	24	16	1.91
61131985--61132018	13	2.6	13	85	0	50	17	32	29	20	1.96
61134722--61135194	47	10.1	47	93	0	732	32	8	30	28	1.88
61135313--61135391	37	2.1	37	90	0	122	24	18	31	25	1.98
61137426--61137480	28	2.0	28	96	0	101	32	7	12	47	1.69
61143751--61143792	12	3.6	12	77	6	50	11	2	16	69	1.29
61143753--61143797	23	2.0	23	86	0	63	13	6	15	64	1.47
61149229--61149340	37	3.0	37	89	2	154	29	28	16	25	1.97
61149484--61149771	48	6.0	48	95	1	495	30	28	6	34	1.83
61149484--61149770	146	2.0	144	94	1	502	30	28	6	34	1.83
61155794--61155987	47	4.1	47	89	0	271	33	10	29	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61155957--61156143	48	3.8	48	84	8	259	36	6	25	31	1.81
61155958--61156143	100	1.9	96	87	6	275	36	6	25	31	1.81
61156293--61156433	37	3.8	37	95	0	246	24	17	31	26	1.97
61175303--61175448	40	3.7	40	86	3	204	24	26	24	23	2.00
61175302--61175455	80	1.9	80	91	0	254	24	27	23	24	2.00
61176196--61176222	2	13.5	2	100	0	54	51	48	0	0	1.00
61178178--61178202	11	2.3	11	100	0	50	28	0	0	72	0.86
61185722--61185802	25	3.3	25	82	3	85	35	16	25	22	1.94
61185750--61185802	25	2.1	25	92	0	97	35	15	22	26	1.93
61188091--61188202	27	4.2	26	85	7	143	36	22	24	16	1.94
61188093--61188199	54	2.0	54	88	3	162	37	20	24	17	1.94
61189619--61189665	24	2.0	24	91	0	76	23	38	2	36	1.67
61192793--61192890	27	3.5	28	90	2	135	26	13	28	31	1.94
61192821--61192903	27	3.0	27	87	5	96	30	12	25	32	1.92
61192793--61192904	28	4.0	27	83	6	98	28	12	25	33	1.92
61200856--61200953	27	3.5	28	90	2	135	26	13	28	31	1.94
61200884--61200966	27	3.0	27	87	5	96	30	12	25	32	1.92
61200856--61200967	28	4.0	27	83	6	98	28	12	25	33	1.92
61205826--61205937	27	4.1	27	81	10	131	37	21	24	16	1.94
61212005--61212050	23	1.9	23	86	8	65	39	15	23	21	1.92
61235114--61235170	20	2.8	20	86	0	69	22	28	0	49	1.50
61235833--61236051	40	5.5	39	82	4	154	42	24	15	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61235881--61236069	40	4.7	40	84	2	245	42	23	16	17	1.88
61243242--61243273	9	3.6	9	91	0	55	21	15	0	62	1.32
61245693--61245868	46	3.8	46	79	12	216	20	21	29	28	1.98
61245690--61245861	93	1.8	93	96	0	317	20	21	29	27	1.98
61253304--61253479	46	3.8	46	79	12	216	20	21	29	28	1.98
61253301--61253472	93	1.8	93	96	0	317	20	21	29	27	1.98
61257241--61257352	39	2.8	40	89	6	167	23	23	29	24	1.99
61266401--61266494	27	3.5	26	78	7	91	21	22	19	37	1.95
61266401--61266522	54	2.2	53	81	11	133	21	21	18	38	1.93
61266546--61266802	27	9.4	27	78	8	164	31	7	20	39	1.81
61266525--61266761	54	4.4	53	77	7	215	30	8	19	41	1.80
61266524--61266760	81	2.9	81	74	8	212	30	8	19	41	1.80
61266525--61266802	54	5.1	53	75	10	202	31	7	21	39	1.82
61266726--61266929	81	2.5	80	81	3	264	37	8	21	32	1.83
61266754--61266910	27	5.8	27	90	0	242	38	8	23	29	1.84
61270139--61270260	47	2.6	47	90	0	190	36	13	24	25	1.91
61270261--61270426	55	3.1	54	79	6	201	36	16	24	22	1.94
61270271--61270439	53	3.1	53	76	7	171	36	16	24	23	1.94
61276698--61277023	47	6.8	46	77	9	228	34	17	24	23	1.96
61276932--61277115	55	3.4	54	83	5	228	35	17	25	21	1.95
61281070--61281147	34	2.3	34	84	4	95	29	21	23	25	1.99
61281663--61281696	17	1.9	18	94	5	61	26	44	23	5	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61286111--61286149	16	2.5	15	84	8	51	53	0	2	43	1.14
61286113--61286150	20	1.9	19	85	15	51	52	0	2	44	1.14
61309120--61309237	60	2.0	60	80	12	136	26	22	22	29	1.99
61309412--61309488	25	3.1	24	85	5	91	24	19	23	32	1.97
61309693--61309855	27	6.0	27	92	0	236	25	20	19	34	1.96
61309844--61309996	27	5.7	26	75	9	67	28	9	22	39	1.85
61309844--61310050	54	3.9	54	79	6	197	28	8	21	41	1.83
61309897--61310051	27	5.7	27	85	0	184	27	7	22	42	1.81
61309897--61310051	81	1.9	81	85	5	215	27	7	22	42	1.81
61310044--61310227	27	6.8	27	91	0	287	40	8	22	29	1.83
61310054--61310251	27	7.3	27	88	0	198	39	9	22	29	1.85
61310044--61310265	81	2.7	81	88	0	291	38	8	21	31	1.83
61312460--61312529	25	2.8	26	84	6	90	28	20	24	27	1.99
61312734--61312869	27	5.0	27	93	0	218	24	22	20	32	1.98
61312859--61312986	27	4.8	27	77	9	102	31	10	19	38	1.86
61312911--61313052	27	5.2	27	81	4	133	28	8	22	40	1.83
61312857--61313052	54	3.6	54	76	10	152	30	10	20	38	1.86
61312857--61313052	81	2.4	81	79	7	220	30	10	20	38	1.86
61313031--61313214	27	6.8	26	80	6	197	44	7	17	30	1.76
61313004--61313214	81	2.6	81	80	6	239	42	7	18	32	1.78
61313031--61313214	81	2.3	81	88	1	262	44	7	17	30	1.76
61317092--61317159	35	1.9	35	96	0	127	38	7	11	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61318076--61318247	93	1.8	93	96	0	317	27	29	21	20	1.98
61318069--61318244	46	3.8	46	79	12	216	28	29	21	20	1.98
61325380--61325417	19	2.0	20	85	15	53	39	23	0	36	1.55
61325647--61325817	93	1.8	93	91	0	279	29	27	19	22	1.98
61325642--61325811	46	3.7	46	76	10	175	30	27	18	23	1.98
61326237--61326296	30	2.0	30	86	0	84	33	25	5	36	1.78
61334624--61334715	43	2.1	43	84	11	118	23	20	29	26	1.99
61336274--61336365	43	2.1	43	84	11	118	23	20	29	26	1.99
61338067--61338231	49	3.6	46	82	7	144	29	24	14	31	1.95
61338108--61338278	47	3.6	48	82	6	179	30	26	14	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311