genome.fa.s12.2.7.7.80.10.50.1000.290.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  290  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94345158--94345233	31	2.5	31	88	0	107	30	17	26	26	1.97
94348077--94348260	40	4.6	40	83	2	235	25	22	26	25	2.00
94348523--94348566	22	2.0	22	82	8	54	31	11	13	43	1.80
94354919--94355083	9	17.9	9	71	16	99	36	2	13	47	1.57
94354914--94355104	74	2.6	74	94	3	339	36	2	13	47	1.57
94355292--94355336	14	3.3	14	90	3	74	64	2	0	33	1.06
94355227--94355663	119	3.8	119	91	6	681	56	3	4	35	1.39
94355306--94355682	104	3.5	105	89	6	515	55	4	4	36	1.39
94355411--94355455	14	3.3	14	96	3	83	64	0	0	35	0.94
94355413--94355463	14	3.9	12	92	5	57	60	1	0	37	1.08
94360097--94360127	16	1.9	16	93	0	53	67	0	3	29	1.06
94360239--94360292	16	3.8	16	70	27	57	48	3	9	38	1.53
94360527--94360592	22	3.0	21	82	6	78	28	37	3	30	1.72
94360527--94360590	15	4.4	15	75	13	62	26	39	3	31	1.72
94360638--94360671	15	2.4	14	90	5	50	41	29	2	26	1.70
94360638--94360671	7	4.7	7	85	7	50	41	29	2	26	1.70
94360691--94360730	15	2.7	14	84	7	53	47	35	0	17	1.48
94360688--94360745	22	2.6	22	77	0	62	46	31	0	22	1.52
94360689--94360811	14	8.4	14	70	9	57	47	28	0	24	1.52
94361104--94361300	41	4.8	41	87	0	270	26	20	22	29	1.98
94361363--94361469	39	2.7	39	86	4	142	20	25	21	32	1.97
94362833--94362889	19	2.8	19	75	17	53	54	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94362857--94362907	17	3.1	17	70	16	52	56	0	0	43	0.99
94362855--94362904	26	2.0	26	85	11	70	54	0	0	46	1.00
94362993--94363031	17	2.4	17	86	4	53	28	0	5	66	1.12
94364976--94365150	46	3.8	45	79	11	203	21	20	29	28	1.98
94364972--94365142	92	1.8	93	93	1	299	21	21	30	27	1.98
94368078--94368146	15	4.6	15	83	0	84	11	17	13	57	1.64
94368069--94368156	30	3.0	30	81	8	99	10	17	15	56	1.66
94373316--94373350	16	2.1	17	94	5	63	25	0	2	71	1.00
94375095--94375133	20	2.0	19	85	5	51	71	0	5	23	1.05
94375220--94375343	53	2.4	53	78	6	137	36	16	12	34	1.86
94382447--94382499	14	3.8	14	89	0	79	39	9	18	32	1.83
94382954--94383005	15	3.2	15	73	19	50	44	0	1	53	1.11
94385203--94385457	46	5.5	47	71	13	122	23	29	18	28	1.98
94385338--94385457	47	2.6	47	78	13	122	20	31	20	27	1.97
94390936--94390991	28	2.0	28	100	0	112	53	7	14	25	1.66
94396264--94396321	30	2.0	30	89	3	91	27	18	24	29	1.98
94403364--94403477	47	2.7	40	86	11	142	28	28	21	21	1.98
94408911--94409046	47	3.0	43	77	14	132	29	27	19	22	1.98
94464841--94464872	5	6.6	5	92	7	57	81	0	0	18	0.70
94464842--94464872	9	3.3	9	95	4	53	80	0	0	19	0.71
94468631--94468763	40	3.3	40	92	4	198	27	27	20	24	1.99
94468631--94468814	80	2.3	81	85	5	241	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94472530--94472561	5	6.6	5	92	7	57	81	0	0	18	0.70
94472531--94472561	14	2.2	14	100	0	62	80	0	0	19	0.71
94474160--94474203	19	2.4	19	85	7	56	50	0	9	40	1.34
94476679--94476732	11	5.3	11	74	17	62	35	11	20	33	1.88
94476668--94476732	20	3.2	20	97	0	121	33	10	20	35	1.87
94476674--94476726	9	5.4	9	75	16	52	33	7	20	37	1.81
94476782--94476885	23	4.4	24	92	3	167	27	20	23	28	1.99
94477093--94477156	31	2.1	31	93	0	110	37	15	23	23	1.93
94483614--94483655	3	14.0	3	100	0	84	66	0	0	33	0.92
94487247--94487272	12	2.2	12	100	0	52	42	15	34	7	1.75
94490539--94490604	19	3.2	21	87	6	64	36	19	9	34	1.84
94490556--94490634	19	4.2	19	90	9	126	35	16	10	37	1.82
94490578--94490634	17	3.5	15	88	11	53	35	15	10	38	1.82
94490556--94490634	36	2.1	39	90	9	128	35	16	10	37	1.82
94490958--94491971	220	4.6	220	90	0	1501	28	21	17	33	1.96
94493002--94493068	9	7.8	8	78	18	55	2	10	1	85	0.78
94497037--94497095	29	2.0	29	83	6	75	61	0	8	30	1.26
94497448--94497497	24	2.0	24	84	7	64	58	2	4	36	1.29
94500149--94500336	67	2.8	67	95	0	324	20	31	17	29	1.96
94516887--94517081	40	4.9	40	89	0	293	21	23	29	26	1.99
94520432--94520471	21	1.9	21	85	10	55	27	25	22	25	2.00
94520892--94520978	43	2.0	43	97	0	165	31	13	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94522343--94522712	43	8.6	43	93	0	623	31	32	24	11	1.91
94522705--94522828	38	3.2	38	84	2	149	28	27	21	22	1.99
94524638--94524687	25	2.0	25	100	0	100	16	32	12	40	1.84
94534688--94534732	6	7.5	6	89	0	72	15	2	2	80	0.92
94537428--94537458	14	2.2	14	94	0	53	38	0	12	48	1.42
94538536--94538601	7	8.6	7	76	18	53	43	1	1	53	1.19
94538539--94538604	8	8.4	8	73	18	50	45	1	1	51	1.19
94538536--94538604	27	2.5	26	76	23	79	44	1	1	52	1.19
94538546--94538614	32	2.2	32	79	7	79	47	1	2	47	1.25
94538665--94538771	53	2.0	54	90	1	171	59	6	24	9	1.52
94540593--94540620	5	5.6	5	100	0	56	17	0	0	82	0.68
94544841--94544880	17	2.4	17	88	12	64	65	20	0	15	1.28
94559970--94559998	6	5.0	6	95	4	51	13	0	0	86	0.58
94562380--94562440	15	3.5	15	70	29	50	50	6	1	40	1.38
94563177--94563346	88	1.9	88	93	0	295	37	21	15	25	1.93
94568396--94568428	5	6.6	5	92	0	57	18	3	0	78	0.87
94571192--94571225	14	2.4	14	95	0	59	44	26	5	23	1.76
94587959--94588050	45	2.0	45	100	0	184	32	15	23	28	1.95
94591256--94591317	29	2.1	29	82	14	74	50	19	8	22	1.74
94595780--94595961	88	2.1	88	92	0	301	35	19	8	35	1.83
94597743--94597767	4	6.2	4	100	0	50	76	0	0	24	0.80
94600003--94600066	6	10.7	6	89	0	83	20	34	28	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94599995--94600066	18	4.0	18	83	0	81	22	31	29	16	1.96
94600700--94600749	12	4.2	12	82	5	57	24	2	54	20	1.55
94605533--94605566	17	2.0	17	94	0	59	55	0	5	38	1.24
94606980--94607031	24	2.2	24	89	0	77	55	9	1	32	1.43
94608950--94609001	24	2.2	24	89	0	77	55	9	1	32	1.43
94609160--94609222	24	2.6	24	92	0	99	19	11	31	38	1.86
94615049--94615146	19	5.2	19	90	7	155	34	16	11	37	1.84
94615049--94615146	36	2.6	37	88	9	144	34	16	11	37	1.84
94615719--94616469	44	17.3	44	72	9	531	26	23	17	32	1.97
94615733--94615803	37	1.9	37	97	0	133	26	21	16	35	1.95
94615724--94616158	132	3.3	132	91	2	677	26	22	17	33	1.96
94616203--94616469	131	2.0	132	92	0	446	26	24	16	31	1.97
94617352--94617400	17	2.9	17	81	3	64	6	8	0	85	0.73
94623056--94623143	19	4.7	19	91	5	153	36	13	12	37	1.83
94624162--94624442	131	2.1	131	79	3	298	27	19	18	34	1.95
94625371--94625427	16	3.6	16	78	7	62	29	26	5	38	1.78
94627350--94627390	21	1.9	21	85	14	57	56	0	2	41	1.13
94635623--94635664	22	1.9	22	85	9	59	57	0	2	40	1.12
94638258--94638315	30	1.9	30	89	0	89	41	3	24	31	1.71
94638527--94638558	13	2.5	13	94	0	55	31	0	12	56	1.37
94638653--94638894	50	4.7	50	86	4	297	26	24	29	19	1.99
94638653--94638902	100	2.4	103	88	6	364	26	24	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94645838--94645895	30	1.9	30	89	0	89	41	3	24	31	1.71
94646107--94646138	13	2.5	13	94	0	55	31	0	12	56	1.37
94646235--94646471	50	4.6	50	85	4	287	25	24	29	20	1.99
94646234--94646478	100	2.4	104	86	6	347	25	24	29	20	1.99
94651817--94651894	27	2.9	27	84	0	111	28	26	21	23	1.99
94653370--94653423	27	1.9	29	85	7	76	62	5	1	29	1.28
94653478--94653522	20	2.2	20	84	4	54	64	2	4	28	1.25
94654533--94654592	17	3.4	17	75	13	59	35	3	5	56	1.37
94654554--94654612	9	6.4	9	74	16	50	37	0	1	61	1.07
94654567--94654612	20	2.4	19	83	16	60	39	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311