genome.fa.s12.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  137  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46485904--46486088	46	3.9	46	80	6	185	24	27	17	30	1.97
46485904--46486088	94	2.0	95	82	1	228	24	27	17	30	1.97
46493159--46493271	46	2.4	48	85	2	140	25	30	18	25	1.98
46493194--46493363	46	3.8	45	73	12	159	24	25	20	30	1.99
46499965--46500282	47	6.8	47	73	12	244	27	21	29	21	1.98
46499965--46500282	94	3.4	94	79	8	312	27	21	29	21	1.98
46506187--46506295	43	2.6	43	78	12	111	29	24	19	26	1.98
46509473--46509502	8	3.8	8	100	0	60	86	0	0	13	0.57
46509470--46509508	16	2.4	16	82	0	60	76	5	0	17	0.96
46510339--46510403	29	2.2	29	91	0	103	29	32	16	21	1.96
46522669--46522840	46	3.7	47	78	13	171	22	20	27	29	1.99
46523067--46523104	19	2.0	20	85	15	53	36	0	23	39	1.55
46530233--46530358	46	2.7	46	92	0	207	21	21	26	30	1.98
46537919--46537956	19	2.0	20	85	15	53	36	0	23	39	1.55
46544271--46544630	103	3.6	104	90	7	557	30	29	21	19	1.97
46544956--46545019	30	2.2	29	81	10	76	29	28	6	35	1.82
46544963--46545019	30	1.9	30	85	3	80	29	24	7	38	1.82
46551840--46552202	104	3.6	104	91	5	591	30	30	19	18	1.96
46552526--46552589	30	2.2	29	81	10	76	29	28	6	35	1.82
46552533--46552589	30	1.9	30	85	3	80	29	24	7	38	1.82
46553510--46553565	24	2.4	24	82	8	71	71	1	21	5	1.15
46554807--46554991	40	4.6	39	83	6	212	23	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46554807--46554989	79	2.3	81	83	7	223	24	22	27	25	2.00
46554860--46555014	79	2.0	79	83	7	199	25	20	27	26	1.99
46561986--46562139	42	3.6	42	80	10	188	24	18	28	28	1.98
46566177--46566202	12	2.2	12	100	0	52	53	23	0	23	1.46
46573094--46573134	14	2.9	14	88	0	64	24	7	29	39	1.82
46576241--46576267	4	6.8	4	100	0	54	51	0	0	48	1.00
46577907--46578114	96	2.2	96	86	1	283	28	21	18	31	1.96
46577982--46578114	51	2.8	45	75	13	133	25	23	18	32	1.97
46578123--46578401	89	3.1	87	72	10	267	27	23	17	31	1.97
46577938--46578430	45	10.9	45	69	9	223	27	22	18	31	1.97
46578167--46578430	89	3.0	89	75	6	300	27	22	18	31	1.97
46578034--46578430	178	2.2	178	90	0	616	26	22	18	31	1.97
46578780--46578927	46	3.2	46	88	0	215	25	27	15	32	1.95
46579322--46579424	53	1.9	53	90	0	161	46	4	22	26	1.71
46585208--46585256	21	2.2	23	75	14	57	48	0	14	36	1.44
46585942--46586094	32	4.7	32	78	4	137	34	12	20	32	1.90
46585939--46586093	65	2.4	65	78	0	166	35	12	20	30	1.91
46585939--46586151	33	6.5	33	75	5	128	35	13	22	29	1.92
46587579--46587603	3	8.3	3	100	0	50	32	0	36	32	1.58
46588690--46588728	19	2.0	20	95	5	71	41	20	15	23	1.90
46592751--46592798	21	2.2	21	82	14	62	50	0	14	35	1.44
46593501--46593728	33	7.0	33	82	3	201	35	13	23	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46593481--46593728	65	3.8	64	76	7	196	35	12	22	28	1.91
46593501--46593692	98	2.0	98	81	2	224	34	12	22	30	1.91
46595271--46595297	4	6.8	4	100	0	54	51	0	0	48	1.00
46599006--46599128	48	2.6	46	85	11	151	34	8	5	51	1.57
46600737--46600779	18	2.4	18	92	0	68	20	27	9	41	1.83
46601256--46601301	20	2.4	20	92	7	78	34	17	8	39	1.80
46604279--46604660	126	3.0	126	91	1	586	26	19	19	34	1.96
46606085--46606169	25	3.4	25	91	0	134	21	22	27	29	1.99
46606235--46606281	10	4.7	10	89	5	69	31	17	12	38	1.87
46606215--46606281	21	3.3	21	85	4	75	31	17	11	38	1.87
46614200--46614252	21	2.5	21	81	3	61	33	16	11	37	1.85
46622116--46622213	25	4.0	24	84	5	106	25	18	22	33	1.96
46622130--46622213	25	3.4	25	86	1	107	25	17	21	35	1.95
46622280--46622326	10	4.7	10	89	5	69	31	17	12	38	1.87
46622260--46622326	21	3.3	21	85	4	75	31	17	11	38	1.87
46629001--46629148	40	3.7	40	94	0	262	24	22	27	25	2.00
46631588--46631688	49	2.1	49	100	0	202	36	8	11	42	1.73
46638246--46638290	23	2.0	23	86	0	63	68	0	26	4	1.08
46640368--46640692	27	12.0	27	85	1	337	25	12	20	41	1.88
46641107--46641287	41	4.5	41	77	8	176	41	18	17	22	1.90
46641108--46641287	80	2.2	80	81	7	204	42	18	17	22	1.89
46641836--46642033	108	1.8	108	94	0	351	42	29	3	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46643196--46643247	19	2.7	20	84	6	70	26	38	1	32	1.68
46643270--46643306	19	1.9	19	100	0	74	27	24	27	21	1.99
46646075--46646241	9	19.0	9	71	14	64	46	17	1	34	1.57
46646083--46646226	43	3.5	43	80	12	167	47	17	0	34	1.53
46646058--46646190	43	2.7	50	78	18	172	48	15	0	36	1.46
46646097--46646224	36	3.4	36	75	17	118	47	17	0	34	1.53
46651348--46651376	14	2.1	14	93	6	51	34	0	10	55	1.34
46651782--46651857	21	3.6	21	83	0	89	31	17	47	3	1.66
46652113--46652178	31	2.1	31	86	5	89	16	9	19	54	1.68
46659121--46659184	26	2.4	26	84	10	76	34	25	12	28	1.92
46659291--46659396	54	2.0	54	86	3	151	17	23	21	36	1.95
46659289--46659400	27	4.1	27	83	10	131	16	24	22	36	1.94
46668215--46668681	27	17.3	27	83	2	501	40	20	8	31	1.82
46668708--46668919	27	7.9	27	82	2	221	37	18	20	23	1.94
46668735--46668907	81	2.1	81	90	0	265	37	20	19	22	1.94
46669339--46669543	6	33.3	6	74	15	170	18	17	14	49	1.79
46669342--46669474	25	5.6	25	78	15	156	18	18	15	47	1.83
46669361--46669522	37	4.5	37	79	12	185	18	17	14	48	1.81
46669339--46669486	68	2.2	68	95	0	260	18	17	14	48	1.81
46669339--46669532	19	10.5	18	75	15	128	18	17	14	50	1.79
46671246--46671310	32	2.0	33	87	3	96	26	23	21	29	1.99
46671274--46671338	28	2.4	28	84	2	78	29	26	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46671718--46671770	27	2.0	27	92	0	88	32	11	16	39	1.85
46671725--46671822	27	3.6	27	82	5	101	29	10	18	41	1.83
46675773--46676049	48	5.8	48	74	9	235	26	20	25	28	1.99
46678288--46678423	47	3.0	43	77	14	132	29	27	19	22	1.98
46696432--46696510	37	2.1	37	86	4	106	25	31	18	24	1.98
46696683--46696932	51	5.1	51	89	5	390	31	28	8	32	1.87
46696683--46696944	98	2.7	98	96	0	479	30	28	8	32	1.86
46696628--46696944	145	2.2	141	85	6	436	29	29	8	32	1.87
46696628--46696944	47	6.6	47	86	5	436	29	29	8	32	1.87
46700144--46700177	17	1.9	18	88	5	52	41	5	11	41	1.66
46700164--46700215	19	2.7	19	85	11	79	46	13	11	28	1.78
46704775--46704808	17	1.9	18	94	5	61	41	5	14	38	1.70
46704795--46704846	19	2.7	19	90	0	86	51	11	9	26	1.68
46708269--46708328	30	2.0	30	90	0	93	35	8	25	31	1.85
46708751--46708921	93	1.8	93	91	0	279	21	21	28	28	1.98
46708755--46708926	46	3.7	46	77	13	181	22	20	27	29	1.99
46716318--46716490	46	3.7	46	80	13	219	21	21	28	28	1.98
46716315--46716485	93	1.8	93	96	0	315	21	21	29	28	1.98
46720618--46720673	7	8.0	7	87	0	85	44	37	0	17	1.49
46724330--46724442	27	4.2	26	86	8	145	16	23	23	36	1.94
46724330--46724442	55	2.1	54	88	5	165	16	23	23	36	1.94
46738612--46738762	43	3.5	43	93	0	257	30	31	25	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46738760--46738857	38	2.6	38	90	0	142	30	26	20	22	1.98
46752442--46752810	47	7.8	48	73	14	266	28	18	28	24	1.98
46754366--46754586	40	5.6	40	82	2	250	23	26	23	25	2.00
46765662--46765703	21	2.0	21	85	0	57	16	11	9	61	1.55
46766238--46766284	22	2.0	25	84	12	64	51	2	2	44	1.25
46769017--46769131	55	2.1	56	82	8	137	35	21	23	19	1.96
46769042--46769111	27	2.5	28	90	4	106	34	22	24	18	1.96
46769042--46769131	27	3.2	27	82	7	101	33	23	23	20	1.97
46769237--46769301	28	2.3	28	91	0	103	32	7	27	32	1.85
46776867--46776981	55	2.1	56	83	8	146	34	21	24	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311