genome.fa.s12.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  110  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36401030--36401080	27	1.9	26	88	11	77	39	11	11	37	1.79
36401142--36401225	27	3.1	26	88	6	114	30	20	26	22	1.98
36402383--36402430	25	1.9	25	82	0	60	33	22	16	27	1.96
36402469--36402525	9	5.9	9	73	15	51	35	8	21	35	1.84
36402467--36402537	20	3.5	20	94	0	124	35	11	21	32	1.89
36402478--36402532	11	5.4	11	70	16	55	36	12	20	30	1.90
36402584--36402777	25	8.0	24	88	5	252	28	20	22	27	1.99
36402970--36403033	31	2.1	31	87	0	92	39	14	23	23	1.91
36404341--36404452	44	2.6	43	81	6	129	24	17	25	33	1.97
36404341--36404494	43	3.6	42	77	5	139	24	18	24	32	1.97
36425208--36425338	47	2.8	47	82	0	163	23	14	26	35	1.93
36436501--36436584	44	1.9	44	82	4	107	36	10	25	27	1.89
36436777--36436994	54	4.0	54	78	4	206	38	16	22	22	1.93
36436777--36436971	54	3.6	54	80	7	216	36	17	22	23	1.95
36438017--36438076	30	2.0	30	87	6	86	40	6	25	28	1.80
36438503--36438678	46	3.8	46	76	10	187	21	20	28	28	1.98
36438500--36438671	93	1.8	93	91	0	281	22	20	29	27	1.99
36441840--36442064	40	5.6	40	80	7	215	25	24	27	23	2.00
36441840--36442100	80	3.3	79	79	4	251	26	23	26	23	2.00
36441840--36442100	120	2.2	121	80	6	291	26	23	26	23	2.00
36445358--36445471	6	18.3	6	69	20	65	47	14	17	21	1.82
36445367--36445471	31	3.4	31	90	1	129	47	13	18	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36445403--36445460	19	3.4	19	65	30	58	46	17	17	18	1.84
36445609--36445683	27	2.8	27	87	4	98	37	17	22	22	1.94
36445805--36445856	27	1.9	27	84	7	70	36	17	23	23	1.95
36445840--36445898	22	2.7	22	81	0	64	32	22	25	20	1.98
36446246--36446522	27	10.3	27	82	1	288	26	16	19	36	1.93
36446247--36446499	54	4.7	54	87	2	339	26	17	18	36	1.93
36446480--36446565	27	3.2	27	83	0	91	29	6	24	39	1.81
36446507--36446686	81	2.2	81	79	0	216	33	7	23	35	1.82
36446544--36446673	27	4.8	27	86	0	179	37	7	23	30	1.83
36446538--36446711	81	2.1	81	79	0	204	36	7	21	35	1.82
36455610--36455711	27	3.8	27	84	5	125	17	24	21	36	1.95
36455852--36455930	6	12.8	6	73	15	63	18	18	15	46	1.84
36455858--36455927	31	2.3	31	89	0	104	18	21	15	44	1.87
36457931--36458500	27	21.1	27	84	2	565	27	22	8	40	1.84
36457931--36458500	54	10.6	54	85	2	655	27	22	8	40	1.84
36457931--36458500	81	7.0	80	86	3	712	27	22	8	40	1.84
36458509--36458793	27	10.6	27	86	0	372	37	20	17	25	1.94
36459458--36459559	27	3.8	27	84	5	125	17	24	21	36	1.95
36459696--36459768	31	2.4	31	80	0	101	19	19	13	47	1.82
36462888--36462926	16	2.4	16	95	0	69	35	25	12	25	1.92
36466331--36466455	41	3.0	41	91	4	207	36	18	10	34	1.85
36468163--36468212	24	2.1	24	100	0	100	22	12	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36468156--36468215	24	2.3	27	80	16	90	23	11	13	51	1.73
36470477--36470632	43	3.6	43	79	10	158	30	25	18	25	1.98
36473190--36473295	40	2.6	41	83	4	124	32	26	19	21	1.97
36476526--36476575	20	2.6	19	84	9	57	42	0	22	36	1.54
36477141--36477351	48	4.5	48	73	17	149	31	21	25	21	1.98
36477182--36477351	48	3.6	48	74	3	173	31	22	24	21	1.98
36477181--36477351	94	1.8	94	88	2	263	31	22	25	21	1.98
36477371--36477538	46	3.5	48	73	13	141	27	18	28	25	1.98
36483604--36483826	40	5.6	40	85	5	274	25	21	26	26	2.00
36483604--36483851	80	3.1	79	83	6	218	26	21	26	25	2.00
36496641--36496684	23	1.9	23	85	0	61	36	6	11	45	1.67
36498062--36498178	40	3.0	40	94	1	200	19	23	29	26	1.98
36499593--36499855	40	6.6	40	87	3	316	26	28	20	24	1.99
36507531--36507793	40	6.6	40	87	3	316	26	28	20	24	1.99
36515465--36515727	40	6.6	40	87	3	316	26	28	20	24	1.99
36518108--36518151	23	1.9	23	85	0	61	36	6	11	45	1.67
36529172--36529241	35	2.0	35	94	0	122	28	28	8	34	1.87
36555836--36555897	27	2.3	27	85	0	79	41	12	12	32	1.81
36560315--36560431	43	2.8	42	72	12	105	24	18	24	31	1.98
36564419--36564572	55	2.8	55	77	1	166	21	24	17	36	1.95
36571544--36571733	40	4.8	40	92	3	305	23	21	29	25	1.99
36571544--36571733	78	2.4	78	92	3	310	23	21	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36579602--36579772	40	4.3	40	87	1	220	22	21	28	26	1.99
36583108--36583311	53	3.8	54	77	3	187	21	24	17	37	1.93
36592358--36592446	27	3.3	26	88	3	115	40	16	13	29	1.87
36594471--36594571	27	3.7	27	85	0	121	29	22	8	38	1.85
36594574--36594922	27	13.0	27	87	0	457	34	18	20	25	1.96
36595349--36595413	22	3.0	22	80	8	78	20	21	23	35	1.96
36595572--36595673	27	3.8	27	84	5	98	18	22	21	37	1.94
36595572--36595673	54	1.9	53	83	2	132	18	22	21	37	1.94
36595810--36595919	31	3.5	31	87	1	139	18	16	15	50	1.79
36595864--36595919	6	9.2	6	75	11	51	19	19	14	46	1.84
36606865--36606919	29	1.9	29	85	3	76	23	23	27	25	2.00
36614892--36614937	23	2.1	22	88	8	67	39	15	8	36	1.78
36615279--36615321	20	2.1	21	87	12	63	23	9	18	48	1.76
36615495--36615549	28	2.0	28	100	0	110	50	25	0	23	1.49
36620046--36620087	12	3.4	13	81	18	54	71	0	0	28	0.86
36620392--36620522	65	2.0	65	95	0	235	23	13	18	44	1.85
36622906--36622955	25	2.0	25	84	4	64	36	22	14	28	1.92
36622992--36623049	21	2.7	22	84	10	77	34	12	22	31	1.91
36624334--36624384	21	2.4	21	86	0	66	13	33	31	21	1.92
36624849--36624944	37	2.6	37	80	5	95	15	10	42	31	1.81
36628346--36628462	41	2.8	42	82	8	141	29	25	17	27	1.98
36628346--36628494	41	3.5	43	77	12	137	27	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36638298--36638349	23	2.2	25	86	6	72	34	13	26	25	1.93
36644357--36644490	51	2.6	51	82	11	168	27	16	28	27	1.97
36647647--36647683	17	2.2	17	100	0	74	37	18	10	32	1.86
36647886--36648064	39	4.6	40	88	3	258	29	27	23	19	1.98
36654482--36654738	39	6.5	39	89	3	365	29	28	22	19	1.98
36658935--36658991	26	2.2	26	83	3	69	26	19	19	35	1.95
36659238--36659280	12	3.4	13	81	15	54	27	0	0	72	0.85
36659238--36659280	15	2.9	14	81	18	52	27	0	0	72	0.85
36661301--36661454	28	5.5	28	92	1	238	33	27	11	27	1.92
36661904--36661929	12	2.2	12	100	0	52	42	0	7	50	1.31
36669333--36669486	28	5.5	28	94	1	247	33	27	12	27	1.92
36672874--36672945	34	2.1	35	82	7	85	20	26	11	41	1.86
36674311--36674441	65	2.0	65	96	0	244	43	17	14	24	1.86
36676533--36676747	39	5.5	40	90	6	298	25	22	27	24	2.00
36676529--36676714	79	2.4	79	90	4	297	24	22	27	24	2.00
36676529--36676714	39	4.7	40	91	5	299	24	22	27	24	2.00
36684642--36684861	40	5.6	40	82	5	252	25	26	23	25	2.00
36692651--36692869	40	5.6	40	81	5	234	24	26	23	25	2.00
36695792--36695979	40	4.7	40	87	3	272	25	21	27	26	2.00
36695792--36696018	79	2.9	80	83	6	275	25	21	26	25	2.00
36695792--36696012	119	1.9	119	83	5	295	26	21	26	25	2.00
36698806--36698915	44	2.6	42	80	7	114	30	26	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36698764--36698912	42	3.5	43	77	8	142	27	26	19	26	1.99
36707093--36707196	27	3.8	28	84	2	115	24	23	18	34	1.96
36714098--36714168	31	2.3	31	92	0	115	29	21	16	32	1.95
36714374--36714561	26	7.3	26	82	1	211	28	20	20	30	1.98
36714374--36714561	52	3.7	52	90	3	258	28	20	20	30	1.98
36714374--36714561	78	2.5	77	85	4	247	28	20	20	30	1.98
36715365--36715451	27	3.2	27	91	3	131	18	26	20	34	1.96
36715505--36715602	27	3.6	27	75	15	92	33	12	17	36	1.87
36717246--36717319	29	2.6	29	86	4	96	27	16	31	25	1.96
36718895--36719125	27	8.6	27	86	3	261	28	8	20	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311