genome.fa.s12.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  194  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66659242--66659315	24	3.1	24	76	3	78	22	13	31	32	1.93
66678631--66678674	21	2.1	21	95	0	79	31	9	31	27	1.88
66682547--66682592	9	4.7	10	82	10	51	34	8	19	36	1.83
66685216--66685278	31	2.0	31	100	0	126	46	25	6	22	1.75
66685532--66685703	93	1.8	93	89	0	272	26	28	21	23	1.99
66685527--66685699	46	3.8	45	76	10	170	27	27	21	23	1.99
66685575--66685718	46	3.1	46	71	18	127	28	27	20	24	1.99
66696935--66696959	10	2.5	10	100	0	50	8	20	44	28	1.79
66701619--66701692	31	2.4	31	80	13	91	66	2	2	28	1.19
66704291--66704419	46	2.8	46	82	10	165	23	20	27	29	1.99
66704642--66704679	19	2.0	20	85	15	53	36	0	23	39	1.55
66712050--66712087	19	2.0	20	85	15	53	36	0	23	39	1.55
66715944--66715976	16	1.9	18	88	11	52	48	12	15	24	1.78
66716506--66716767	45	5.9	45	89	2	361	25	27	21	24	1.99
66717573--66717711	47	3.0	47	96	0	251	46	14	12	27	1.80
66718703--66718733	6	5.2	6	92	0	53	48	0	51	0	1.00
66718972--66719020	19	2.5	20	83	6	66	24	4	4	67	1.26
66719433--66719483	15	3.5	15	72	5	50	47	27	1	23	1.63
66719604--66719638	18	1.9	18	88	0	52	8	0	34	57	1.29
66719625--66719657	16	2.1	15	94	5	57	12	0	39	48	1.40
66719714--66719858	41	3.6	40	81	5	175	22	22	19	35	1.96
66723262--66723302	19	2.0	20	86	13	57	39	7	14	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66728622--66728714	30	3.1	30	92	0	159	19	21	31	27	1.97
66728979--66729003	13	1.9	13	100	0	50	24	16	32	28	1.96
66735750--66735804	26	2.1	27	82	3	67	41	29	12	16	1.85
66742948--66742998	19	2.5	20	71	9	50	56	1	1	39	1.22
66743650--66743688	11	3.5	11	80	13	53	2	2	20	74	1.06
66744414--66744467	28	1.9	28	88	7	83	31	0	0	68	0.90
66746287--66746351	28	2.3	28	80	15	64	29	3	1	66	1.16
66746329--66746393	27	2.4	27	80	10	80	27	1	0	70	0.96
66746319--66746380	19	3.3	18	77	8	61	30	1	1	66	1.11
66751102--66751162	24	2.6	24	84	2	88	42	8	3	45	1.50
66753671--66753885	46	4.6	48	79	5	226	29	19	27	23	1.98
66753678--66753885	94	2.2	92	88	5	301	29	19	27	23	1.98
66753905--66753998	49	1.9	49	91	0	152	29	20	27	22	1.98
66753919--66754028	49	2.2	49	82	3	132	30	19	27	22	1.98
66755733--66755903	93	1.8	93	93	0	297	29	28	19	22	1.98
66755728--66755900	46	3.7	46	74	13	174	30	27	19	22	1.98
66762209--66762287	37	2.1	37	88	4	115	25	30	18	25	1.98
66762406--66762801	47	8.5	47	95	0	679	28	29	8	32	1.87
66762406--66762801	186	2.1	188	93	0	679	28	29	8	32	1.87
66775147--66775322	46	3.8	46	79	12	216	20	21	29	28	1.98
66775144--66775315	93	1.8	93	96	0	317	20	21	29	27	1.98
66779690--66779860	93	1.8	93	92	0	288	30	29	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66779685--66779857	46	3.7	46	72	15	167	31	28	19	21	1.97
66779783--66779868	46	1.9	45	83	4	111	32	29	17	20	1.96
66792102--66792139	20	2.0	19	85	10	51	50	18	28	2	1.61
66816885--66817023	57	2.4	58	80	3	138	28	25	17	28	1.98
66823983--66824040	7	8.3	7	88	0	71	18	3	37	39	1.68
66829395--66829523	39	3.3	39	88	0	186	31	20	24	24	1.98
66837408--66837539	39	3.4	39	95	0	228	28	20	28	22	1.99
66837408--66837557	78	1.9	78	84	2	203	28	20	28	22	1.99
66845423--66845554	39	3.4	39	95	0	228	28	20	28	22	1.99
66845423--66845572	78	1.9	78	84	2	203	28	20	28	22	1.99
66848374--66848591	40	5.5	40	87	2	280	22	23	28	25	1.99
66850724--66850785	30	2.1	30	96	0	115	29	9	20	40	1.84
66850726--66850780	16	3.6	16	71	28	57	29	9	20	41	1.82
66856630--66856664	16	2.2	16	89	0	52	54	17	17	11	1.71
66856884--66857033	28	5.3	28	86	1	210	25	13	33	28	1.93
66856884--66857034	57	2.7	55	85	5	194	25	13	33	27	1.93
66872725--66872897	46	3.7	46	79	10	199	22	19	27	30	1.98
66872722--66872892	93	1.8	93	92	0	288	22	19	28	29	1.98
66875976--66876014	18	2.2	18	90	4	62	33	5	2	58	1.33
66880413--66880584	93	1.8	93	94	0	308	27	30	21	20	1.98
66880406--66880581	46	3.8	46	79	12	207	28	30	21	19	1.98
66888033--66888073	18	2.3	18	91	4	57	41	14	0	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66889445--66889578	56	2.4	56	96	0	241	32	25	16	26	1.96
66895676--66895787	42	2.7	41	79	10	113	27	15	26	30	1.96
66900555--66900668	42	2.7	42	78	13	124	35	22	15	25	1.94
66901737--66901761	13	1.9	13	100	0	50	40	24	4	32	1.73
66911324--66911505	40	4.6	40	91	3	271	26	26	22	23	2.00
66913970--66914141	93	1.8	93	96	0	317	29	29	20	20	1.98
66913963--66914138	46	3.8	46	79	12	216	30	28	20	20	1.98
66922157--66922378	40	5.6	40	90	2	342	26	26	22	24	2.00
66931837--66932258	212	2.0	212	96	0	781	24	21	24	30	1.99
66941234--66941267	16	2.1	16	94	0	59	5	32	5	55	1.48
66942012--66942052	8	5.1	8	82	11	57	53	24	19	2	1.57
66942465--66942575	27	4.1	27	86	5	145	16	24	22	36	1.94
66947175--66947350	46	3.8	46	72	10	160	30	27	21	21	1.98
66947182--66947353	93	1.8	93	87	0	254	29	27	21	22	1.99
66953047--66953133	27	3.2	27	83	6	113	14	21	26	36	1.93
66959900--66959944	23	1.9	24	82	13	58	53	17	0	28	1.44
66974828--66974866	17	2.4	16	86	4	51	20	5	23	51	1.67
66974833--66974866	16	2.1	17	88	5	52	20	5	23	50	1.70
66981699--66981786	27	3.3	27	85	3	124	34	18	13	34	1.90
66981700--66981867	91	1.8	92	87	6	252	36	19	13	31	1.90
66981821--66981935	27	4.3	27	88	0	158	38	16	16	28	1.91
66981794--66981927	54	2.5	54	83	8	166	37	17	14	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66984473--66984654	55	3.3	54	73	11	158	25	25	14	35	1.93
66985683--66985828	39	3.7	39	92	0	229	29	26	21	21	1.99
66993703--66993878	39	4.5	39	89	2	239	27	28	22	22	1.99
67013041--67013218	48	3.7	47	88	3	232	26	29	19	24	1.98
67013039--67013218	96	1.9	96	86	4	256	26	29	19	24	1.98
67017687--67017810	48	2.5	50	85	6	157	31	27	17	23	1.97
67020615--67020647	15	2.2	15	94	0	57	57	12	12	18	1.64
67023748--67023979	49	4.7	49	83	3	311	29	26	18	25	1.98
67023748--67023979	100	2.3	99	86	2	322	29	26	18	25	1.98
67028482--67028798	48	6.6	48	90	1	420	26	30	17	25	1.97
67034780--67034955	27	6.6	27	78	6	169	27	14	27	30	1.95
67034780--67034955	55	3.3	54	81	5	187	27	14	27	30	1.95
67042687--67042857	25	6.6	25	78	10	157	28	14	28	29	1.95
67042687--67042857	26	6.6	25	76	12	141	28	14	28	29	1.95
67042687--67042857	53	3.3	52	81	8	179	28	14	28	29	1.95
67046689--67046863	27	6.6	27	80	5	185	27	15	28	29	1.96
67054606--67054782	27	6.6	27	82	5	196	27	15	27	29	1.96
67054606--67054782	54	3.3	55	82	4	216	27	15	27	29	1.96
67054607--67054761	81	1.9	81	86	5	224	27	15	27	29	1.96
67054603--67054782	81	2.2	81	82	3	220	27	15	27	30	1.96
67057111--67057288	40	4.5	40	93	2	288	24	22	28	25	2.00
67057516--67057557	22	1.9	22	85	9	59	33	9	14	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67065120--67065217	40	2.5	40	88	5	137	25	23	27	23	2.00
67065445--67065486	22	1.9	22	85	9	59	33	9	14	42	1.78
67065977--67066007	12	2.6	12	94	0	53	58	0	16	25	1.38
67068808--67068849	20	2.2	20	82	4	50	35	2	19	42	1.64
67069355--67069672	48	6.8	46	72	12	161	26	18	30	25	1.98
67069355--67069529	94	1.9	94	83	7	230	28	17	29	24	1.97
67069360--67069674	44	6.8	47	72	13	174	26	18	29	25	1.98
67069547--67069672	49	2.7	45	86	6	164	26	19	30	23	1.98
67078687--67078983	108	2.7	108	93	0	513	34	17	25	22	1.96
67078679--67078983	55	5.6	54	83	8	388	35	17	25	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311