Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  296  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96315094--96315147
24
2.3
24
75
18
60
55
1
7
35
1.39
96315991--96316025
17
2.0
18
88
5
54
8
0
2
88
0.61
96315993--96316025
9
3.7
9
95
0
57
6
0
3
90
0.52
96316013--96316055
22
2.0
22
90
0
68
6
4
11
76
1.13
96317140--96317370
88
2.6
87
82
7
256
35
18
16
30
1.92
96317290--96317498
73
2.9
72
83
8
269
30
23
18
27
1.98
96317290--96317740
75
5.8
75
74
14
362
31
23
18
26
1.97
96317290--96317740
165
2.9
154
83
11
537
31
23
18
26
1.97
96317224--96317755
246
2.2
234
83
8
651
32
22
18
26
1.96
96329964--96330079
56
2.1
56
82
6
139
55
9
4
31
1.52
96330208--96330280
29
2.7
26
77
12
69
57
6
4
31
1.44
96331284--96331318
17
2.0
18
88
5
54
57
0
42
0
0.99
96331381--96331435
13
4.2
13
81
6
67
7
0
5
87
0.68
96331383--96331433
20
2.6
20
87
3
68
7
0
5
86
0.71
96333008--96333061
16
3.4
16
94
0
90
33
0
35
31
1.58
96333040--96333149
45
2.6
43
80
12
131
34
5
28
31
1.80
96333389--96333435
16
3.0
16
78
12
53
51
2
0
46
1.13
96333273--96333809
120
4.5
121
94
0
859
50
5
2
42
1.38
96333534--96333568
18
2.0
17
88
5
52
54
0
0
45
0.99
96333560--96333589
16
1.9
15
93
6
51
50
10
0
40
1.36
96333791--96333958
47
3.7
46
70
18
143
47
3
3
45
1.37
96333806--96333982
91
1.9
92
88
4
254
49
3
2
44
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96333947--96333985
17
2.5
15
84
12
51
58
0
0
41
0.98
96339876--96339902
2
13.5
2
100
0
54
51
0
0
48
1.00
96349333--96349470
68
2.0
68
91
0
222
28
31
18
22
1.97
96353503--96353549
21
2.3
21
81
3
60
63
4
4
27
1.31
96367154--96367195
12
3.4
12
86
3
57
76
7
0
16
1.00
96372345--96372373
11
2.6
11
100
0
58
65
20
0
13
1.26
96377530--96377600
31
2.4
29
86
9
90
64
1
0
33
1.02
96377542--96377597
15
3.8
15
72
9
53
58
0
0
41
0.98
96377716--96377741
6
4.3
6
100
0
52
0
15
0
84
0.62
96397730--96397837
44
2.4
44
87
3
144
29
23
13
33
1.93
96404891--96405064
46
3.8
46
78
14
196
21
19
29
29
1.97
96404887--96405057
93
1.8
92
92
3
290
21
19
29
28
1.98
96418535--96418663
46
2.8
46
94
2
215
30
29
20
19
1.97
96422526--96422701
46
3.8
46
77
14
191
21
19
28
29
1.98
96422523--96422694
93
1.8
93
92
2
292
22
20
29
28
1.98
96425494--96425601
44
2.4
44
87
3
144
29
23
13
33
1.93
96427602--96427645
21
2.1
21
100
0
88
25
13
22
38
1.91
96427833--96427935
46
2.2
48
84
6
131
35
12
24
27
1.91
96431213--96431319
53
2.0
53
100
0
214
28
1
14
55
1.51
96437488--96437526
21
1.9
21
84
5
53
66
2
7
23
1.30
96446775--96446807
6
5.7
6
96
3
59
0
12
0
87
0.53
96459729--96459801
37
2.0
37
86
10
105
47
4
0
47
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96463394--96463438
20
2.2
20
84
7
56
48
2
4
44
1.35
96474380--96474590
51
4.2
51
89
1
334
31
22
11
34
1.90
96474379--96474580
101
2.0
102
97
0
379
31
21
11
34
1.90
96478766--96478876
47
2.4
47
83
6
145
35
22
16
26
1.95
96485929--96486038
46
2.4
47
83
7
145
35
23
15
25
1.94
96486801--96486877
4
18.8
4
76
5
64
5
25
3
64
1.31
96491700--96491921
46
4.8
46
78
11
231
31
28
19
21
1.97
96491707--96491876
93
1.8
93
89
5
272
30
29
18
21
1.97
96493340--96493461
50
2.5
49
84
5
151
26
22
14
36
1.93
96498303--96498500
43
4.6
43
94
0
351
30
32
26
10
1.90
96501444--96501512
15
4.7
15
77
8
70
56
17
15
10
1.66
96501444--96501512
30
2.3
30
82
7
88
56
17
15
10
1.66
96502121--96502166
23
2.0
23
95
0
83
30
19
17
32
1.95
96504522--96504740
46
4.8
46
75
10
169
30
28
18
22
1.97
96512086--96512157
24
3.0
24
72
11
67
38
22
19
19
1.93
96512214--96512292
26
3.1
26
80
12
92
39
22
20
17
1.92
96527791--96527916
63
2.0
63
100
0
252
28
17
17
36
1.93
96534770--96534803
17
2.0
17
94
0
59
44
8
0
47
1.34
96554402--96554475
36
2.1
36
100
0
148
39
18
20
21
1.93
96557906--96557943
12
3.0
13
84
7
51
44
0
0
55
0.99
96557914--96557990
30
2.5
32
77
14
81
44
3
0
51
1.19
96563369--96563903
181
3.0
180
97
1
1011
32
18
14
35
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96567776--96567861
39
2.2
39
81
4
102
36
5
6
51
1.53
96572918--96572955
20
1.9
20
89
10
60
50
0
2
47
1.15
96576392--96576431
16
2.5
16
83
0
53
45
0
2
52
1.14
96579520--96579545
13
2.0
13
100
0
52
30
0
0
69
0.89
96580320--96580378
31
1.9
31
92
0
100
54
11
13
20
1.70
96580869--96580898
15
1.9
16
93
6
53
46
13
3
36
1.60
96584758--96584783
7
3.7
7
100
0
52
53
0
0
46
1.00
96587699--96587728
14
2.1
14
93
0
51
56
0
3
40
1.16
96595357--96595393
18
2.1
18
90
5
58
35
0
5
59
1.20
96606981--96607052
30
2.4
29
79
6
81
41
5
5
47
1.50
96621188--96621236
26
2.0
24
84
11
64
63
6
0
30
1.19
96625104--96625252
70
2.1
70
100
0
298
38
5
4
51
1.44
96625584--96625612
14
2.0
15
93
6
51
62
6
3
27
1.37
96629237--96629321
39
2.1
39
80
8
91
45
4
11
37
1.62
96634523--96634566
22
2.0
22
82
8
54
45
0
9
45
1.35
96635133--96635159
7
3.9
7
100
0
54
74
0
0
25
0.83
96642934--96642991
16
3.6
16
78
19
57
12
6
3
77
1.09
96643003--96643049
21
2.2
22
88
11
71
42
0
4
53
1.20
96643020--96643155
37
3.9
35
72
18
122
38
0
2
57
1.19
96643134--96643161
14
2.0
14
100
0
56
42
0
0
57
0.99
96643397--96643444
18
2.7
18
76
0
51
22
4
2
70
1.15
96643360--96643444
36
2.4
36
81
14
97
21
5
2
70
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96643874--96643962
41
2.3
38
80
12
117
39
7
3
49
1.49
96643887--96643970
41
2.0
41
100
0
168
36
7
4
51
1.51
96644722--96644804
6
13.7
6
86
6
114
32
0
0
67
0.91
96644904--96644967
21
3.1
20
82
12
76
60
0
1
37
1.06
96644961--96645006
21
2.2
21
88
7
67
52
4
0
43
1.21
96645019--96645076
17
3.5
15
77
15
53
79
3
5
12
1.02
96648003--96648041
19
2.0
20
90
5
62
51
0
0
48
1.00
96650305--96650355
14
3.5
15
77
20
54
62
0
5
31
1.19
96656489--96656568
39
2.1
39
95
0
142
38
15
5
41
1.68
96672264--96672828
127
4.5
125
85
4
650
37
20
15
26
1.92
96672258--96672828
257
2.3
250
82
4
689
38
20
15
26
1.92
96673704--96673729
5
5.2
5
100
0
52
80
0
0
19
0.71
96674285--96674310
2
13.0
2
100
0
52
0
50
0
50
1.00
96677728--96677795
22
3.0
22
79
10
75
41
17
23
17
1.90
96678968--96679066
7
14.3
7
72
21
57
48
1
1
49
1.14
96678971--96679022
5
10.0
5
83
8
59
48
0
0
51
1.00
96678968--96679063
12
7.7
12
70
19
63
48
1
1
48
1.15
96678968--96679029
17
3.9
15
72
19
54
48
0
0
51
1.00
96684060--96684123
33
2.0
31
88
8
94
35
23
9
31
1.87
96684346--96684533
41
4.6
41
89
3
281
27
22
21
27
1.99
96695188--96695274
21
4.0
23
74
15
85
37
24
20
17
1.93
96695647--96695703
15
3.9
15
90
2
89
50
12
0
36
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96696801--96696856
5
10.6
5
81
11
67
57
3
0
39
1.16
96696800--96696853
12
4.3
12
80
17
65
55
3
0
40
1.17
96696949--96697001
21
2.5
22
78
9
65
58
3
0
37
1.16
96700175--96700268
7
13.3
7
75
18
61
47
1
1
50
1.15
96700178--96700224
5
9.0
5
86
9
58
46
0
0
53
1.00
96700175--96700228
22
2.5
22
87
0
81
46
0
0
53
1.00
96700956--96701038
41
2.0
41
100
0
166
34
2
21
40
1.67
96708129--96708299
52
3.2
52
93
1
279
35
14
23
26
1.93
96708262--96708371
37
3.0
37
89
2
170
35
15
23
25
1.94
96718739--96718780
12
3.2
13
78
18
50
45
2
0
52
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311