Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  287  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93633960--93633987
5
5.6
5
100
0
56
39
0
0
60
0.97
93636526--93636568
21
2.0
22
81
4
52
41
0
6
51
1.29
93640906--93640938
4
8.0
4
96
3
57
24
0
48
27
1.51
93648998--93649030
3
11.0
3
100
0
66
66
0
0
33
0.92
93650197--93650258
32
1.9
32
83
6
81
58
1
3
37
1.24
93652423--93652502
33
2.4
32
75
18
76
38
6
2
52
1.40
93656314--93656367
6
8.7
6
76
15
56
74
3
1
20
1.07
93657841--93657870
5
6.0
5
92
0
51
56
0
0
43
0.99
93660485--93660514
14
2.1
14
100
0
60
36
0
36
26
1.57
93660604--93660633
14
2.1
14
100
0
60
13
0
40
46
1.43
93660662--93660695
13
2.6
13
90
0
50
29
0
35
35
1.58
93662080--93662195
54
2.2
53
80
3
133
18
0
31
50
1.47
93662206--93662283
41
1.9
41
86
0
111
19
23
23
34
1.96
93669810--93669853
21
2.1
21
100
0
88
45
13
9
31
1.75
93672023--93672153
62
2.1
63
81
7
160
39
6
3
49
1.48
93672121--93672156
17
2.2
17
90
5
56
41
2
0
55
1.14
93672434--93672474
21
1.9
22
85
5
57
36
4
0
58
1.20
93675638--93675676
21
1.9
20
89
5
60
53
5
0
41
1.23
93687016--93687051
16
2.2
17
90
5
56
16
25
0
58
1.38
93688031--93688087
29
1.9
30
82
10
73
42
7
7
43
1.58
93691233--93691260
3
9.3
3
100
0
56
67
0
0
32
0.91
93691995--93692028
17
1.9
18
94
5
61
70
2
0
26
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93692480--93692513
4
8.0
4
87
12
50
76
0
0
23
0.79
93692480--93692513
9
3.9
9
92
7
61
76
0
0
23
0.79
93692480--93692513
13
2.6
13
82
17
52
76
0
0
23
0.79
93694017--93694067
18
2.8
18
87
0
84
37
11
15
35
1.84
93694000--93694095
18
5.4
18
77
7
79
38
11
14
35
1.82
93699209--93699244
3
12.0
3
100
0
72
33
0
0
66
0.92
93699716--93699919
99
2.1
99
96
0
372
32
11
16
38
1.85
93708362--93708599
51
4.8
51
80
13
314
52
2
15
29
1.57
93708448--93708631
97
1.9
97
100
0
368
54
2
12
30
1.52
93709520--93709546
7
3.9
7
100
0
54
74
0
0
25
0.83
93709514--93709567
26
2.1
26
83
13
67
74
1
0
24
0.92
93714479--93714521
9
4.7
9
77
5
50
46
30
0
23
1.52
93715461--93715494
17
2.0
17
94
0
59
55
0
5
38
1.24
93716673--93716805
24
5.5
24
83
3
153
23
12
29
34
1.92
93716673--93716806
72
1.9
72
85
0
187
23
12
29
34
1.92
93716673--93716823
72
2.1
72
82
0
176
23
12
29
34
1.92
93717203--93717334
69
1.9
70
88
1
203
31
11
18
38
1.86
93717490--93717675
39
4.7
39
87
1
264
20
24
27
27
1.99
93717488--93717675
79
2.4
79
83
1
245
20
23
27
28
1.99
93717490--93717712
118
1.9
118
86
0
320
20
23
26
29
1.99
93719982--93720026
18
2.4
19
85
14
58
37
0
2
60
1.09
93722461--93722521
17
3.4
17
65
12
50
31
3
13
52
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93722456--93722561
37
2.9
37
94
0
185
33
4
14
47
1.65
93722498--93722558
17
3.4
17
68
12
50
34
3
11
50
1.55
93722571--93722646
9
8.4
9
89
0
116
25
13
21
40
1.89
93726716--93726823
54
2.0
54
98
0
207
27
28
3
39
1.74
93726855--93726887
16
2.0
17
88
5
50
6
21
9
63
1.45
93730876--93730957
26
3.2
26
92
0
137
29
8
26
35
1.86
93737653--93737720
33
2.0
34
91
5
111
27
11
11
48
1.75
93738133--93738163
12
2.7
12
95
5
55
48
0
0
51
1.00
93738179--93738236
29
2.0
30
86
3
82
53
8
1
36
1.42
93741743--93741783
18
2.3
18
88
12
59
70
4
14
9
1.30
93750930--93750954
5
5.0
5
100
0
50
20
0
0
80
0.72
93751371--93751412
14
2.9
14
80
16
50
4
11
0
83
0.79
93751374--93751421
24
2.0
24
87
4
69
6
10
0
83
0.81
93757795--93757839
18
2.3
20
85
7
58
26
4
0
68
1.08
93762181--93762215
12
2.8
12
86
4
52
68
2
5
22
1.24
93762410--93762443
3
11.3
3
100
0
68
67
0
0
32
0.91
93763805--93763944
52
2.7
52
81
7
167
25
17
28
29
1.97
93766752--93767020
46
5.8
46
73
17
243
21
20
29
28
1.98
93766798--93766966
47
3.6
47
75
16
197
21
20
28
28
1.98
93766749--93767013
93
2.8
93
96
0
485
21
21
29
27
1.98
93774240--93774265
5
5.2
5
100
0
52
80
0
0
19
0.71
93794930--93794980
25
2.2
23
83
13
61
47
0
5
47
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93795944--93795991
24
2.1
23
81
14
55
39
0
4
56
1.19
93795948--93795991
22
1.9
24
81
9
56
43
0
4
52
1.22
93796226--93796269
19
2.3
19
84
0
52
45
0
0
54
0.99
93796243--93796283
19
2.2
18
87
12
57
48
2
0
48
1.14
93796236--93796303
28
2.4
27
80
7
82
51
2
0
45
1.16
93810654--93810687
18
1.9
17
88
5
50
20
5
0
73
1.04
93818727--93818773
21
2.2
22
92
3
78
21
38
19
21
1.94
93822914--93822965
22
2.3
23
74
6
54
50
0
0
50
1.00
93826570--93826651
30
2.7
30
92
0
128
46
7
20
25
1.76
93831238--93831345
15
7.2
15
67
12
78
44
7
22
25
1.79
93831232--93831355
30
4.1
30
93
1
203
43
6
24
25
1.78
93832335--93832369
3
12.0
3
87
6
54
71
0
0
28
0.86
93834981--93835028
25
1.9
25
82
0
60
31
18
0
50
1.48
93835184--93835365
46
4.0
46
91
1
267
21
23
14
40
1.90
93837364--93837406
11
3.7
11
82
11
50
60
2
0
37
1.10
93837369--93837447
30
2.6
30
75
13
72
54
5
0
40
1.22
93842748--93842873
47
2.7
46
84
4
155
31
26
14
27
1.95
93842889--93843068
31
5.8
31
88
5
265
26
26
19
27
1.99
93843044--93843170
50
2.5
51
89
3
186
27
21
14
37
1.92
93845637--93845704
15
4.4
15
74
18
59
45
0
1
52
1.09
93845723--93845759
16
2.3
16
86
13
58
40
0
0
59
0.97
93845771--93845826
22
2.6
22
83
5
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93853234--93853271
20
1.9
20
88
0
58
47
10
2
39
1.52
93854544--93854662
60
2.0
60
90
3
186
52
13
0
33
1.47
93854973--93855031
22
2.6
23
76
12
61
66
1
0
32
1.02
93866587--93866620
16
2.1
16
88
0
50
50
14
17
17
1.79
93869415--93869455
21
2.0
21
90
0
64
29
21
29
19
1.98
93871354--93871387
16
2.1
16
88
0
50
50
14
17
17
1.79
93875062--93875105
5
8.8
5
90
5
63
43
0
0
56
0.99
93875112--93875151
20
1.9
20
90
10
62
77
2
10
10
1.08
93877853--93878026
51
3.4
51
89
1
278
32
14
22
30
1.94
93882829--93883002
51
3.4
51
90
1
287
32
14
22
29
1.94
93884595--93884625
16
2.0
16
93
6
55
16
0
0
83
0.64
93885034--93885064
2
15.5
2
93
0
53
45
0
0
54
0.99
93885956--93886226
132
2.1
132
88
1
400
29
19
17
32
1.95
93885956--93886292
132
2.6
131
84
1
352
29
20
18
32
1.96
93886210--93886452
131
1.9
131
79
6
278
25
18
20
35
1.95
93887418--93887499
39
2.3
32
84
14
92
45
1
1
52
1.16
93887439--93887501
7
9.4
7
75
16
53
47
0
1
50
1.10
93887506--93887530
5
5.0
5
100
0
50
60
0
20
20
1.37
93887591--93887616
6
4.3
6
100
0
52
84
0
15
0
0.62
93888693--93888749
22
2.6
22
83
8
80
14
24
19
42
1.88
93890303--93890340
20
2.0
20
89
5
60
71
0
26
2
1.00
93892814--93892859
5
9.4
5
95
2
58
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93894739--93894776
20
1.9
20
88
0
58
47
5
0
47
1.24
93896548--93896587
5
7.8
5
91
2
62
37
0
0
62
0.95
93898060--93898328
46
5.8
45
75
11
267
21
20
29
28
1.98
93898056--93898274
47
4.7
47
76
12
220
21
20
30
27
1.98
93898056--93898321
93
2.9
93
97
0
487
21
20
30
27
1.98
93905062--93905094
16
2.0
17
94
5
59
51
0
0
48
1.00
93906414--93906443
16
1.9
16
93
6
53
76
0
0
23
0.78
93906585--93906622
19
1.9
19
89
5
58
23
0
0
76
0.79
93906610--93906662
16
3.1
17
78
8
63
54
0
1
43
1.11
93906622--93906662
17
2.4
18
84
12
59
60
0
2
36
1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311