Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  279  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91499914--91499963
21
2.6
18
87
12
64
68
22
2
8
1.26
91507795--91507959
90
1.8
90
84
5
226
32
23
21
22
1.98
91508675--91508734
20
2.9
21
62
5
50
33
21
20
25
1.97
91510240--91510291
21
2.4
22
90
3
79
32
1
7
57
1.38
91510573--91510621
22
2.2
22
92
7
82
24
6
2
67
1.24
91510782--91510840
24
2.4
25
78
13
61
18
16
0
64
1.29
91515002--91515041
21
1.9
21
85
10
55
17
12
15
55
1.70
91515345--91515388
23
1.9
23
85
0
61
9
2
11
77
1.08
91518308--91518338
16
1.9
16
93
0
53
48
6
0
45
1.28
91522961--91522986
4
6.5
4
100
0
52
23
0
0
76
0.78
91525640--91525753
42
2.7
42
87
4
158
28
24
14
32
1.95
91525725--91525844
47
2.6
45
81
6
141
29
25
15
30
1.96
91525866--91526005
31
4.7
31
81
8
182
25
27
20
26
1.99
91525878--91525928
26
2.0
26
84
0
66
27
29
15
27
1.96
91525985--91526161
50
3.5
50
88
0
264
26
22
15
35
1.94
91531047--91531071
7
3.6
7
100
0
50
60
0
0
40
0.97
91531419--91531470
25
2.0
26
85
10
72
53
3
13
28
1.57
91534184--91534221
8
4.6
8
84
15
51
86
0
5
7
0.69
91534178--91534221
17
2.6
17
83
13
56
86
0
4
9
0.70
91535392--91535429
19
2.0
19
89
0
58
28
23
10
36
1.88
91543458--91543607
67
2.2
67
81
8
171
32
17
28
21
1.96
91543482--91543665
67
2.8
64
77
8
194
29
17
29
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91551171--91552059
44
20.4
44
87
2
1276
29
16
32
22
1.95
91552625--91552663
9
4.2
9
87
6
51
12
5
0
82
0.83
91552626--91552665
19
2.0
20
90
4
64
15
5
0
80
0.88
91553553--91553590
19
2.0
19
94
0
67
31
23
10
34
1.89
91554737--91554798
31
2.0
31
84
6
81
35
9
11
43
1.73
91559152--91559209
30
1.9
30
85
0
80
36
6
0
56
1.26
91563058--91563101
19
2.3
19
88
4
61
29
18
4
47
1.68
91571193--91571319
44
2.9
44
83
1
155
27
18
25
29
1.98
91571427--91571543
44
2.6
45
72
2
112
30
17
23
28
1.97
91571200--91571703
226
2.2
227
87
1
706
30
18
21
29
1.97
91572421--91572456
16
2.2
17
90
5
56
11
0
2
86
0.68
91573676--91573780
28
3.8
27
75
8
79
35
5
2
56
1.38
91576360--91576392
17
1.9
18
88
11
52
42
12
0
45
1.41
91579544--91579610
27
2.5
27
92
0
116
20
25
11
41
1.87
91581575--91581628
16
3.3
16
86
2
72
37
1
33
27
1.68
91581695--91581796
30
3.4
31
83
5
122
29
22
3
44
1.71
91582165--91582223
3
18.0
3
83
13
64
66
0
32
1
1.02
91582165--91582220
18
3.0
20
87
7
73
66
0
32
1
1.03
91582175--91582224
7
7.3
7
82
17
52
68
0
32
0
0.90
91582165--91582223
10
6.3
10
75
13
63
66
0
32
1
1.02
91582507--91582570
18
3.8
17
80
16
80
82
0
17
0
0.66
91582496--91582570
25
2.9
24
84
13
80
81
0
18
0
0.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91582508--91582561
7
7.0
7
82
17
63
83
0
16
0
0.65
91582504--91582571
24
2.8
23
82
8
73
80
0
19
0
0.70
91583121--91583162
22
2.0
22
86
9
61
52
16
4
26
1.63
91583158--91583319
17
9.4
17
76
10
150
29
12
10
47
1.74
91583179--91583318
35
4.1
35
80
5
155
29
12
10
47
1.74
91592132--91592174
18
2.5
17
81
11
52
27
18
9
44
1.80
91592153--91592199
24
2.0
24
86
0
67
44
8
8
38
1.65
91592313--91592353
21
2.0
21
86
9
59
51
17
4
26
1.65
91592345--91592514
17
9.5
17
73
15
112
30
12
10
47
1.74
91592345--91592514
18
9.5
18
74
17
124
30
12
10
47
1.74
91592349--91592515
36
4.7
35
78
7
167
31
11
10
46
1.74
91593213--91593246
16
2.1
16
88
0
50
58
0
2
38
1.13
91593195--91593416
120
1.9
119
97
1
419
49
4
1
44
1.32
91593230--91593414
59
3.1
59
68
20
175
48
5
1
44
1.35
91593523--91593555
14
2.3
15
89
5
50
75
6
0
18
1.00
91593902--91594051
59
2.6
58
85
3
212
37
22
18
21
1.94
91602573--91602614
21
2.0
21
86
9
59
35
0
19
45
1.50
91603054--91603111
19
3.1
19
94
0
98
31
5
0
63
1.16
91604333--91604378
24
1.9
24
82
8
58
63
6
2
28
1.31
91606142--91606217
35
2.2
35
90
0
116
32
23
15
27
1.95
91607041--91607109
21
3.4
21
71
15
72
36
1
7
55
1.37
91607096--91607126
15
2.1
14
94
5
53
35
3
6
54
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91607637--91607665
6
4.8
6
100
0
58
0
13
0
86
0.58
91614190--91614214
6
4.2
6
100
0
50
48
32
0
20
1.50
91616425--91616472
23
2.1
23
100
0
96
52
4
0
43
1.20
91616487--91616554
36
1.9
35
82
14
86
48
7
1
42
1.40
91616744--91616815
28
2.5
28
77
4
72
48
4
1
45
1.30
91617078--91617133
14
4.0
14
83
4
60
21
5
0
73
1.03
91617188--91617219
13
2.3
15
89
10
50
34
0
0
65
0.93
91617179--91617244
34
1.9
34
82
11
82
36
0
1
62
1.05
91617208--91617281
21
3.4
21
83
9
87
35
0
4
60
1.15
91617556--91617604
16
3.2
16
72
19
50
61
2
0
36
1.08
91617646--91617696
22
2.4
21
84
12
61
47
1
1
49
1.24
91617661--91617713
22
2.4
22
84
6
63
56
1
1
39
1.21
91617678--91617755
34
2.2
34
86
10
97
57
2
0
39
1.12
91617565--91617756
20
9.6
20
65
25
75
52
3
1
42
1.26
91617800--91617839
18
2.2
19
90
4
64
75
0
5
20
0.99
91617784--91617833
14
3.7
13
78
7
55
74
0
2
24
0.93
91617850--91617893
16
2.8
16
79
3
54
84
2
9
4
0.85
91617808--91617888
24
3.3
24
70
13
58
79
2
6
12
1.02
91622224--91622265
21
2.0
21
85
0
57
45
0
0
54
0.99
91622223--91622265
10
4.2
10
79
5
50
44
0
0
55
0.99
91625199--91625242
12
3.6
12
77
17
54
36
9
18
36
1.82
91625194--91625243
25
2.0
25
100
0
100
40
12
16
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91627465--91627500
17
2.1
17
89
0
54
22
2
8
66
1.31
91627857--91628021
41
4.0
41
81
3
174
32
18
21
27
1.97
91631660--91631708
21
2.3
21
82
6
64
48
24
0
26
1.51
91633206--91633265
25
2.4
25
91
0
93
8
1
28
61
1.34
91633399--91633503
42
2.5
43
82
1
131
27
17
24
30
1.97
91638686--91638720
14
2.4
15
95
4
63
82
0
17
0
0.66
91641176--91641301
38
3.2
38
69
14
103
30
19
15
34
1.94
91641225--91641435
86
2.5
86
91
0
343
33
23
13
30
1.93
91641932--91642191
28
9.2
27
73
13
91
55
5
17
22
1.62
91641967--91642250
58
5.0
55
77
9
193
57
5
16
21
1.59
91642089--91642248
29
5.6
29
74
9
94
56
2
18
21
1.53
91641977--91642270
28
10.4
28
77
10
181
56
4
18
21
1.60
91643174--91643207
6
5.5
6
96
3
59
67
0
0
32
0.91
91655617--91655654
15
2.4
16
86
8
51
57
7
5
28
1.49
91659528--91659580
24
2.2
25
83
6
74
28
28
0
43
1.55
91659776--91659846
34
2.1
34
81
0
79
18
7
28
46
1.75
91660825--91660892
34
2.0
35
85
2
93
17
10
27
44
1.81
91662096--91662359
94
2.8
94
82
5
322
28
20
28
21
1.98
91662149--91662457
47
6.5
47
76
9
218
29
21
26
22
1.99
91663221--91663326
55
1.9
55
92
0
176
18
23
33
24
1.97
91663222--91663339
55
2.1
55
87
3
166
20
24
31
23
1.98
91663984--91664047
23
2.7
25
79
16
73
59
21
10
7
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91665535--91665577
23
2.0
21
86
9
59
65
6
0
27
1.18
91665818--91665858
17
2.5
17
88
4
57
65
4
4
24
1.32
91667875--91668010
52
2.5
55
86
4
188
24
18
22
34
1.96
91672651--91672861
54
3.9
54
87
0
224
20
29
24
25
1.99
91672823--91672939
39
3.0
39
89
0
144
17
28
26
27
1.98
91675229--91675270
12
3.2
13
80
10
50
71
0
0
28
0.86
91675169--91675428
129
2.0
129
94
0
457
48
9
8
34
1.66
91675297--91675674
206
1.8
206
95
0
684
42
7
11
38
1.71
91676537--91678282
874
2.0
873
93
0
2963
31
16
20
31
1.95
91680794--91680839
22
2.1
22
100
0
92
41
13
17
28
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311