genome.fa.s12.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  185  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63652454--63652684	84	2.8	84	88	5	317	21	18	23	36	1.95
63652458--63652684	125	1.8	124	88	4	350	20	18	23	37	1.94
63653838--63653943	6	17.3	6	75	14	92	49	14	17	18	1.80
63653852--63653943	37	2.5	37	90	0	139	48	14	18	18	1.80
63654838--63654972	27	5.0	27	86	1	173	25	21	18	34	1.96
63654867--63654972	54	2.0	54	96	0	194	26	20	16	35	1.94
63654878--63654998	54	2.2	54	85	5	147	29	16	18	35	1.93
63654976--63655088	27	4.2	27	81	8	115	30	7	18	43	1.77
63661635--63661935	41	7.3	41	88	5	439	19	18	24	36	1.95
63661635--63661936	81	3.7	82	87	5	432	19	18	24	36	1.95
63663954--63664169	55	4.0	54	77	6	213	24	24	15	35	1.94
63663960--63664162	108	1.9	110	84	4	277	25	23	16	33	1.96
63666628--63666701	37	2.0	37	97	0	139	48	22	10	17	1.78
63669719--63669888	46	3.7	46	74	13	168	29	27	20	22	1.98
63669727--63669898	93	1.8	93	87	0	254	27	27	20	23	1.99
63680495--63680584	44	2.0	44	97	0	171	25	26	15	32	1.96
63685770--63685848	25	3.3	25	62	22	60	31	10	27	30	1.90
63685744--63685867	47	2.6	47	93	0	212	33	12	28	26	1.92
63685838--63685973	48	2.8	48	90	2	209	34	8	27	29	1.86
63686120--63686264	37	3.9	37	94	0	245	24	18	31	26	1.98
63687534--63687925	40	9.8	40	92	0	595	25	22	26	25	2.00
63692179--63692257	25	3.3	25	62	22	60	31	10	27	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63692153--63692278	47	2.7	47	92	0	207	33	11	28	26	1.91
63692247--63692382	48	2.8	48	88	2	200	35	8	27	29	1.85
63692529--63692673	37	3.9	37	91	0	227	24	19	30	25	1.98
63695534--63695743	55	3.9	53	76	12	176	25	24	17	33	1.96
63695534--63695736	108	1.9	110	85	4	286	25	24	17	32	1.97
63709384--63709440	30	1.9	30	88	0	87	40	8	22	28	1.84
63711404--63711510	43	2.5	43	81	3	117	28	14	22	33	1.94
63714561--63714719	24	6.5	24	72	9	115	23	12	31	32	1.92
63714567--63714706	74	1.9	74	82	10	178	23	12	32	32	1.91
63726460--63726631	93	1.8	93	96	0	317	27	29	21	20	1.98
63726453--63726628	46	3.8	46	79	12	216	28	29	21	20	1.98
63733992--63734163	46	3.7	46	77	13	199	29	29	20	21	1.98
63733999--63734170	93	1.8	93	93	0	299	27	28	21	22	1.99
63736755--63736844	41	2.2	41	93	0	153	28	24	25	21	1.99
63750414--63750445	14	2.3	14	94	0	55	43	12	25	18	1.85
63750368--63750491	60	2.1	60	95	3	223	40	12	23	23	1.89
63750388--63750483	30	3.2	30	65	26	85	38	14	23	22	1.92
63750428--63750736	46	6.7	46	87	0	404	42	15	23	19	1.89
63750427--63750736	138	2.2	138	88	0	458	42	15	23	19	1.89
63753020--63753284	27	9.8	27	81	4	320	26	21	10	41	1.85
63753020--63753279	54	4.8	54	86	3	353	26	21	10	41	1.85
63753296--63753401	27	3.9	27	86	0	131	35	16	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63753296--63753399	54	1.9	53	88	1	154	35	17	22	25	1.95
63753602--63753684	27	3.1	26	82	5	94	20	20	20	38	1.94
63753779--63753830	22	2.4	22	80	0	59	21	25	21	32	1.98
63753995--63754068	27	2.8	27	85	6	89	17	24	21	36	1.95
63754186--63754317	6	21.8	6	74	16	112	19	15	15	49	1.80
63754186--63754317	30	4.4	30	87	4	194	19	15	15	49	1.80
63757067--63757238	93	1.8	93	96	0	317	27	29	21	20	1.98
63757060--63757235	46	3.8	46	79	12	216	28	29	21	20	1.98
63759905--63759970	26	2.5	26	80	7	80	69	7	0	22	1.13
63760545--63760636	20	4.7	20	82	1	114	34	21	20	22	1.96
63760549--63760719	40	4.2	41	80	4	188	34	21	22	21	1.97
63760552--63760719	81	2.1	80	80	5	187	33	21	22	22	1.97
63762089--63762138	22	2.1	25	85	10	70	60	0	34	6	1.21
63763465--63763562	44	2.3	42	85	3	124	23	18	24	33	1.97
63763480--63763620	43	3.3	43	80	5	142	22	14	25	36	1.93
63763480--63763611	42	3.1	42	83	3	120	21	15	25	37	1.92
63765359--63765397	13	2.7	14	88	11	53	15	0	20	64	1.30
63765525--63765584	30	2.0	30	96	0	111	26	15	13	45	1.83
63766773--63766819	23	2.0	23	100	0	94	36	12	21	29	1.91
63773664--63773790	43	3.0	42	80	3	146	25	17	24	33	1.96
63775613--63775664	27	2.0	26	84	3	68	34	21	26	17	1.95
63794520--63794571	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63800433--63800607	46	3.8	46	78	10	164	25	20	29	24	1.99
63805075--63805157	44	1.9	43	83	11	107	66	0	19	14	1.25
63811136--63811292	43	3.7	41	80	8	154	24	17	24	33	1.97
63820623--63820833	40	5.3	39	86	3	246	28	27	19	23	1.99
63823512--63823683	93	1.8	93	93	0	299	20	22	30	26	1.98
63823516--63823690	46	3.8	46	76	15	180	20	21	30	27	1.98
63825192--63825356	43	3.9	43	76	11	151	26	17	26	30	1.97
63844013--63844112	49	2.0	49	100	0	200	33	4	24	39	1.74
63844087--63844139	26	2.0	26	96	0	97	43	1	15	39	1.57
63847250--63847377	65	1.9	66	82	6	161	32	17	29	21	1.96
63850172--63850271	51	2.0	51	84	11	134	32	29	16	23	1.95
63855153--63855218	32	2.1	32	97	0	123	36	4	16	42	1.69
63857615--63857648	17	1.9	18	94	5	61	0	14	0	85	0.60
63862037--63862121	41	2.1	41	97	0	161	41	10	12	35	1.78
63874682--63874721	4	10.0	4	100	0	80	50	25	0	25	1.50
63881367--63881421	16	3.4	16	69	18	51	29	7	20	43	1.78
63886270--63886580	48	6.6	48	86	2	409	25	19	27	27	1.99
63900587--63900807	40	5.6	40	77	4	225	25	20	26	27	1.99
63900591--63900807	80	2.7	80	90	2	330	24	20	27	27	1.99
63914691--63914726	13	2.8	13	86	0	54	11	16	41	30	1.83
63917211--63917262	26	2.0	26	88	3	77	42	17	19	21	1.89
63917183--63917425	81	3.0	81	91	2	391	34	18	24	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63917290--63917507	27	8.1	27	70	12	108	36	20	20	22	1.95
63919682--63919842	46	3.5	45	79	8	137	28	17	29	24	1.97
63922741--63922886	46	3.2	46	94	1	240	21	30	21	27	1.98
63931910--63932035	55	2.3	55	83	5	148	15	27	26	30	1.96
63938920--63939041	46	2.6	46	83	7	131	23	28	19	27	1.98
63944499--63944636	27	5.1	27	81	1	161	39	22	17	21	1.93
63944569--63944668	27	3.7	27	82	6	114	37	17	18	28	1.92
63945950--63946046	45	2.2	45	83	3	115	25	18	15	40	1.90
63946399--63946446	20	2.5	19	77	16	53	29	20	0	50	1.49
63949336--63949501	54	3.1	54	88	1	226	35	22	24	16	1.95
63949336--63949501	27	6.2	26	85	6	179	35	22	24	16	1.95
63951084--63951165	26	3.2	26	98	0	155	35	25	7	31	1.84
63955858--63956078	40	5.6	40	84	7	247	23	27	22	26	2.00
63963960--63964055	34	2.8	32	78	18	88	25	28	19	27	1.99
63964026--63964140	40	2.9	39	84	6	151	25	28	22	23	1.99
63964025--63964140	39	2.9	40	84	6	155	25	28	22	24	1.99
63963967--63964144	79	2.4	70	80	12	196	24	27	21	25	2.00
63967155--63967320	27	6.2	26	86	6	197	36	23	24	16	1.94
63967155--63967320	54	3.1	54	92	1	253	36	23	24	16	1.94
63967155--63967320	81	2.0	81	85	4	219	36	23	24	16	1.94
63968902--63969007	26	4.1	26	93	0	185	34	23	7	33	1.83
63969519--63969551	5	6.6	5	100	0	66	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63973946--63973973	5	5.6	5	100	0	56	17	0	0	82	0.68
63981333--63981596	102	2.6	103	90	3	408	30	30	19	19	1.97
63988942--63988993	26	2.0	26	96	0	95	28	34	23	13	1.92
63988809--63989071	103	2.6	102	89	6	408	30	30	20	19	1.97
63989400--63989463	30	2.2	29	81	10	76	29	28	6	35	1.82
63989407--63989463	30	1.9	30	85	3	80	29	24	7	38	1.82
63990499--63990672	58	3.0	58	78	11	194	33	9	20	36	1.85
63990737--63991767	70	14.7	70	75	8	425	24	18	22	34	1.96
63991187--63991781	211	2.8	213	79	4	546	26	19	21	33	1.97
63991233--63991675	141	3.1	137	76	9	399	25	19	21	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311