Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  15  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4088430--4088495
33
2.0
33
100
0
132
24
15
24
36
1.93
4088833--4088883
21
2.4
21
86
0
75
27
7
33
31
1.85
4094404--4094469
29
2.2
30
91
2
107
28
0
13
57
1.37
4094932--4094985
27
2.0
27
100
0
108
37
3
11
48
1.57
4095129--4095189
31
2.0
31
84
6
81
67
1
4
26
1.20
4095509--4095544
18
2.1
18
89
5
56
52
0
2
44
1.15
4097415--4097470
28
2.0
27
83
10
69
35
0
14
50
1.43
4098901--4098960
10
6.2
10
76
18
56
30
0
1
68
0.99
4100701--4100777
29
2.7
29
100
0
154
27
11
12
48
1.76
4113510--4113564
28
2.0
28
96
0
101
43
10
14
30
1.80
4127523--4127598
18
4.1
19
78
13
77
11
19
1
67
1.29
4127615--4127651
18
2.0
18
89
5
56
10
16
0
72
1.10
4146317--4146348
5
6.6
5
92
7
57
18
0
0
81
0.70
4146317--4146347
9
3.3
9
91
8
53
19
0
0
80
0.71
4147563--4147609
24
2.0
24
84
16
62
51
17
0
31
1.46
4148277--4148354
36
2.2
36
81
9
97
39
6
2
51
1.41
4157907--4157948
21
2.0
21
85
4
57
57
0
0
42
0.99
4161837--4161896
2
30.0
2
100
0
120
50
50
0
0
1.00
4166756--4166786
15
2.1
15
100
0
62
32
16
19
32
1.94
4175732--4175775
17
2.6
17
77
0
52
47
2
6
43
1.42
4179213--4179252
15
2.6
15
88
4
53
27
20
12
40
1.88
4180998--4181081
41
2.0
41
100
0
168
38
14
10
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4182543--4182599
28
2.0
28
89
0
87
22
1
14
61
1.42
4192849--4193270
207
2.0
207
82
3
501
33
22
22
20
1.97
4192849--4193270
69
6.1
68
81
1
378
33
22
22
20
1.97
4199244--4199282
13
2.8
14
84
7
53
51
0
0
48
1.00
4206627--4206661
18
1.9
18
94
0
61
25
11
25
37
1.90
4206711--4206738
9
3.1
9
100
0
56
46
10
10
32
1.73
4209374--4209427
11
4.6
12
76
19
60
75
0
5
18
0.98
4209378--4209424
24
1.9
25
87
12
71
74
0
6
19
1.03
4210327--4210390
24
2.7
24
72
18
62
57
0
39
3
1.14
4217015--4217063
24
2.1
23
81
11
55
24
14
14
46
1.81
4228352--4228381
13
2.2
14
94
5
53
26
0
0
73
0.84
4229046--4229084
12
3.4
12
79
13
55
46
0
2
51
1.14
4229053--4229090
11
3.5
11
79
13
51
47
0
5
47
1.24
4229046--4229096
22
2.3
22
96
0
93
43
1
3
50
1.31
4234126--4234150
12
2.1
12
100
0
50
24
8
24
44
1.80
4237492--4237927
125
3.5
126
86
3
596
28
15
15
40
1.88
4237953--4238005
26
2.1
25
82
10
63
58
13
1
26
1.45
4238015--4238218
34
6.7
28
72
23
123
43
17
0
38
1.53
4238086--4238134
22
2.2
22
92
0
80
40
14
0
44
1.45
4238066--4238166
52
1.9
54
86
11
147
42
14
0
42
1.46
4238151--4238233
34
2.4
35
84
9
100
46
12
0
40
1.41
4241651--4241685
14
2.4
15
90
4
54
68
2
0
28
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4241681--4241782
30
3.4
31
81
5
113
29
21
3
45
1.70
4242150--4242190
3
13.3
3
94
5
73
68
0
31
0
0.90
4242308--4242364
16
3.4
16
80
19
64
77
17
3
1
1.00
4242308--4242381
32
2.3
30
82
15
78
72
18
6
1
1.13
4242324--4242395
16
4.6
16
78
10
60
69
19
9
1
1.24
4242356--4242398
15
2.7
16
82
10
61
69
16
13
0
1.19
4242506--4242609
8
13.0
8
78
11
106
79
0
20
0
0.73
4242508--4242613
15
7.1
15
81
7
117
80
0
19
0
0.72
4243156--4243199
23
2.0
22
86
8
63
54
15
4
25
1.60
4243195--4243357
17
9.4
17
75
11
143
31
11
10
46
1.74
4243195--4243357
35
4.7
34
78
6
159
31
11
10
46
1.74
4255089--4255700
192
3.2
192
96
0
1129
30
13
20
35
1.91
4255542--4255824
120
2.3
123
93
3
500
26
14
23
35
1.93
4255542--4255857
120
2.6
121
91
4
490
26
14
22
37
1.92
4255841--4255874
16
2.1
17
88
5
52
17
11
5
64
1.45
4255780--4256192
193
2.2
186
82
10
490
27
17
17
37
1.92
4255780--4256047
91
3.0
87
82
10
307
26
17
17
38
1.92
4256136--4256302
54
3.1
54
89
5
264
28
16
17
37
1.92
4256544--4256578
14
2.4
15
90
4
54
68
2
0
28
1.04
4256574--4256672
30
3.4
30
79
9
98
31
23
4
41
1.73
4256584--4256671
30
3.1
28
83
8
106
30
25
3
40
1.72
4257042--4257076
3
12.3
3
88
11
56
65
0
34
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4257045--4257080
8
4.5
8
93
6
56
66
0
33
0
0.92
4257195--4257237
20
2.2
20
82
0
50
76
18
2
2
1.00
4257260--4257310
25
2.0
24
81
11
57
66
13
19
0
1.24
4257390--4257485
7
13.3
7
79
14
90
79
0
20
0
0.74
4257391--4257481
9
10.8
8
71
19
69
80
0
19
0
0.72
4257402--4257480
26
3.1
26
78
15
94
81
0
18
0
0.70
4257391--4257481
25
3.5
26
75
12
98
80
0
19
0
0.72
4257840--4257883
18
2.4
18
85
7
63
27
18
9
45
1.79
4258056--4258223
17
9.6
18
74
11
152
29
11
10
48
1.72
4258061--4258223
35
4.7
34
78
8
150
30
11
10
47
1.72
4258184--4258312
36
3.4
38
72
16
115
35
10
12
41
1.76
4266307--4266343
20
1.9
20
88
5
58
40
0
8
51
1.32
4268499--4268819
46
7.0
46
90
0
426
39
15
24
21
1.91
4273734--4273903
53
3.2
53
86
2
218
27
15
25
31
1.96
4274789--4274862
37
2.0
37
89
0
112
16
27
31
25
1.96
4275435--4275489
22
2.5
22
88
2
85
16
27
0
56
1.40
4282642--4282667
4
6.5
4
100
0
52
53
0
0
46
1.00
4286069--4286108
16
2.6
14
82
17
53
2
25
0
72
0.97
4287078--4287120
21
2.0
21
86
8
61
20
9
11
58
1.61
4289873--4289999
42
3.0
42
86
6
170
29
26
14
29
1.95
4289958--4290081
47
2.7
46
86
2
167
29
27
16
27
1.97
4290099--4290247
31
4.8
31
90
3
228
25
27
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4290223--4290351
50
2.5
51
90
5
199
25
22
16
35
1.94
4290467--4290495
14
2.0
15
93
6
51
55
17
6
20
1.65
4293203--4293243
12
3.5
11
84
15
55
4
0
26
68
1.10
4300735--4301040
41
7.5
41
85
2
359
33
21
22
22
1.97
4300803--4301040
122
1.9
123
92
0
397
31
22
23
23
1.99
4301203--4301280
21
3.6
21
69
19
61
30
1
23
44
1.61
4307130--4307170
9
4.6
9
84
0
55
46
21
2
29
1.64
4312735--4312782
21
2.3
21
92
0
78
25
14
58
2
1.48
4313160--4313257
43
2.3
43
87
3
135
21
19
21
37
1.94
4323540--4323575
18
1.9
19
88
5
56
22
0
2
75
0.94
4328500--4328568
21
3.4
21
71
15
72
36
1
7
55
1.37
4328555--4328585
15
2.1
14
94
5
53
35
3
6
54
1.42
4339343--4339409
4
17.0
4
72
25
54
73
1
0
25
0.92
4339349--4339408
21
3.1
19
74
25
63
71
1
0
26
0.95
4339343--4339411
18
4.1
17
77
18
72
72
1
0
26
0.93
4340016--4340060
13
3.6
13
77
20
51
24
0
4
71
1.05
4340009--4340059
24
2.1
24
86
13
70
25
0
1
72
0.95
4342819--4342884
31
2.1
31
82
0
78
25
25
30
18
1.98
4346198--4346231
15
2.2
16
90
10
54
26
0
0
73
0.83
4350748--4350789
3
13.7
3
85
5
57
71
0
0
28
0.86
4350748--4350788
12
3.3
12
96
3
73
73
0
0
26
0.84
4351295--4351347
28
2.0
27
88
7
81
62
1
0
35
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4351300--4351347
13
3.5
13
81
10
60
62
2
0
35
1.07
4351413--4351445
3
10.7
3
93
6
57
66
0
0
33
0.92
4352366--4352427
26
2.3
27
94
2
108
17
25
0
56
1.41
4355167--4355208
22
1.9
22
90
0
66
33
9
11
45
1.73
4363313--4363363
21
2.4
21
86
0
66
33
31
5
29
1.81
4364291--4364662
63
5.9
63
81
2
372
25
25
21
28
1.99
4364301--4364673
126
3.0
126
83
1
417
25
25
20
27
1.99
4367623--4367653
12
2.6
12
100
0
62
41
0
0
58
0.98
4372453--4372508
25
2.2
25
96
0
103
35
19
17
26
1.94
4375534--4377753
801
2.8
804
97
0
4248
31
18
24
25
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311