genome.fa.s12.2.7.7.80.10.50.1000.295.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  295  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95991813--95991848	3	11.7	3	94	5	63	33	2	0	63	1.08
95995257--95995288	16	1.9	17	93	6	57	75	0	25	0	0.81
96008682--96008776	49	1.9	49	91	4	156	42	14	21	22	1.89
96010745--96010890	40	3.7	39	78	13	122	26	21	21	29	1.99
96011100--96011145	22	2.1	22	83	0	56	21	0	32	45	1.52
96011105--96011139	15	2.4	15	90	4	54	20	0	34	45	1.51
96011164--96011194	14	2.2	14	94	0	53	16	3	41	38	1.64
96011198--96011246	22	2.3	21	89	3	71	22	0	34	42	1.54
96011408--96011455	15	3.3	15	77	16	55	20	0	33	45	1.52
96011403--96011452	22	2.3	21	77	16	57	24	0	30	46	1.53
96011511--96011565	22	2.5	23	79	8	69	20	1	41	36	1.63
96011915--96011961	21	2.2	21	88	0	67	25	4	21	48	1.68
96014878--96014933	22	2.4	24	76	11	62	25	8	7	58	1.53
96015543--96015587	22	2.0	22	91	0	72	48	15	2	33	1.57
96020136--96020178	22	2.0	22	90	0	68	48	16	2	32	1.58
96027283--96027323	21	2.0	21	100	0	82	29	14	12	43	1.82
96027286--96027331	21	2.2	21	92	0	74	30	13	10	45	1.77
96028450--96028509	30	2.0	30	90	0	93	38	8	25	28	1.84
96034795--96034857	30	2.1	30	93	0	108	17	28	19	34	1.94
96035221--96035282	30	2.1	30	84	6	81	43	0	4	51	1.23
96035464--96035499	12	3.1	11	88	11	54	72	0	27	0	0.85
96039430--96039548	51	2.3	53	89	4	188	18	22	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96039715--96039760	18	2.6	18	78	0	56	39	4	10	45	1.59
96048868--96048903	13	2.8	14	84	16	51	27	25	0	47	1.52
96048855--96048895	18	2.2	19	87	12	59	29	24	0	46	1.53
96049000--96049065	23	2.8	23	95	2	114	46	37	4	10	1.59
96050367--96050430	32	2.0	32	85	8	87	46	7	0	45	1.32
96050943--96050971	13	2.1	14	93	6	51	44	3	0	51	1.18
96052390--96052446	28	2.0	28	93	6	98	49	3	26	21	1.65
96052715--96052840	55	2.3	55	81	2	146	24	30	30	15	1.95
96058887--96058939	19	2.8	18	85	5	61	69	0	30	0	0.88
96064287--96064324	20	1.9	20	88	0	58	36	31	13	18	1.89
96083736--96083830	39	2.5	39	76	20	101	49	1	1	48	1.15
96083736--96083830	7	14.1	7	72	16	58	49	1	1	48	1.15
96085000--96085067	22	3.0	22	84	2	91	16	23	19	41	1.90
96089396--96089433	19	2.0	19	94	0	67	34	0	18	47	1.49
96089646--96089903	41	6.3	41	90	0	408	29	20	28	22	1.98
96089646--96089897	82	3.1	82	99	0	495	28	19	28	22	1.98
96094104--96094199	39	2.5	39	76	20	103	48	1	1	48	1.15
96094105--96094199	7	14.1	7	72	16	58	49	1	1	48	1.15
96095019--96095046	3	9.3	3	100	0	56	67	0	0	32	0.91
96095387--96095440	22	2.5	22	84	9	74	14	25	18	40	1.89
96097264--96097371	41	2.6	42	77	11	105	25	25	19	29	1.98
96097342--96097519	45	4.0	45	95	0	311	26	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96107851--96107880	14	2.1	14	93	0	51	46	36	0	16	1.47
96114721--96114849	45	2.9	45	87	3	181	26	27	23	23	2.00
96118860--96119017	77	2.0	78	97	1	300	31	5	22	39	1.78
96134566--96134617	10	5.1	10	83	2	59	23	5	1	69	1.20
96135955--96136001	24	2.0	24	100	0	94	31	12	25	29	1.93
96151181--96151254	15	5.1	15	78	18	77	22	1	1	74	0.97
96151189--96151254	6	9.7	7	77	19	61	22	1	1	74	0.99
96151185--96151254	21	3.3	21	89	2	104	22	1	1	74	0.98
96151167--96151260	27	3.4	27	75	16	77	20	3	1	75	1.00
96151182--96151269	21	4.2	21	76	16	69	23	1	3	71	1.08
96152147--96152331	93	2.0	93	85	0	253	25	12	27	34	1.92
96152987--96153036	10	5.0	10	81	13	59	22	8	2	68	1.26
96157858--96157903	24	2.0	23	83	12	58	45	0	4	50	1.21
96158026--96158083	3	19.3	3	75	19	50	32	1	1	63	1.14
96158320--96158356	18	2.1	18	89	0	56	43	0	0	56	0.99
96158362--96158413	17	3.1	16	83	8	59	78	0	17	3	0.89
96158375--96158413	16	2.5	15	84	12	51	82	0	17	0	0.68
96158824--96158915	44	2.1	44	87	4	132	20	20	25	33	1.97
96161027--96161138	25	4.5	25	78	0	107	25	18	17	38	1.93
96161029--96161138	50	2.2	50	81	3	123	25	18	17	39	1.92
96161113--96161154	22	1.9	22	85	0	57	21	26	16	35	1.94
96163054--96163120	21	3.2	21	71	0	71	44	16	23	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96163028--96163184	42	3.7	42	80	0	152	45	15	22	16	1.85
96166419--96166478	4	15.0	4	96	0	93	45	25	5	25	1.73
96174910--96174969	30	2.0	31	96	3	113	58	3	6	31	1.40
96174910--96174978	30	2.3	30	90	5	95	55	7	5	31	1.51
96174981--96175008	5	5.6	5	100	0	56	0	17	0	82	0.68
96175545--96175572	12	2.3	12	100	0	56	71	0	0	28	0.86
96175542--96175622	21	3.8	21	70	20	69	60	2	0	37	1.10
96175635--96175754	17	6.8	17	72	18	61	65	0	4	30	1.17
96175613--96175685	37	2.0	37	81	10	87	63	2	2	31	1.23
96175608--96175702	25	3.7	24	74	17	75	64	2	3	30	1.21
96175766--96175810	21	2.1	22	83	4	56	68	2	4	24	1.19
96175798--96175845	8	6.0	8	78	7	53	72	6	0	20	1.05
96178653--96178691	18	2.2	17	95	4	69	56	0	43	0	0.99
96182205--96182300	33	2.9	34	86	7	119	39	11	19	29	1.87
96182244--96182376	65	2.0	66	81	4	153	34	13	21	30	1.92
96182257--96182372	33	3.6	32	77	5	108	36	12	21	30	1.90
96184505--96184563	28	2.1	28	87	3	84	57	11	3	27	1.50
96186282--96186311	15	2.0	15	93	0	51	36	40	10	13	1.78
96186526--96186705	89	2.0	89	91	0	288	38	17	13	29	1.89
96186823--96186874	6	8.7	6	89	0	77	63	13	3	19	1.44
96187311--96187350	21	1.9	21	94	0	71	27	30	17	25	1.97
96188565--96188612	20	2.4	20	89	6	71	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96188565--96188619	19	2.9	18	86	10	58	52	5	0	41	1.24
96188778--96188810	16	2.0	17	88	5	50	33	3	12	51	1.54
96200644--96200692	23	2.1	23	96	0	89	48	10	12	28	1.73
96207289--96207404	19	5.8	19	76	17	103	56	4	0	38	1.25
96207386--96207439	26	2.2	25	86	6	74	50	7	0	42	1.30
96217108--96217232	63	1.9	66	85	7	177	39	4	12	44	1.60
96226503--96226537	6	5.8	6	100	0	70	34	17	14	34	1.90
96238376--96238437	23	2.4	25	80	15	65	61	1	4	32	1.27
96240068--96240306	50	4.6	50	84	4	273	20	29	23	25	1.99
96240067--96240309	100	2.3	105	88	6	363	20	28	24	25	1.99
96240411--96240442	13	2.5	13	94	0	55	56	12	0	31	1.37
96240654--96240710	30	1.9	29	85	3	78	31	24	1	42	1.65
96250992--96251180	53	3.6	52	78	13	185	21	30	23	24	1.99
96251284--96251315	13	2.5	13	94	0	55	56	12	0	31	1.37
96261875--96262113	50	4.6	50	84	4	273	20	29	23	25	1.99
96261874--96262116	100	2.3	105	88	6	363	20	28	24	25	1.99
96262218--96262249	13	2.5	13	94	0	55	56	12	0	31	1.37
96262461--96262518	30	1.9	30	85	0	80	31	24	1	43	1.64
96266095--96266271	50	3.5	50	93	0	300	35	16	23	24	1.95
96266247--96266426	31	5.8	31	92	0	288	27	20	27	25	1.99
96266444--96266608	47	3.7	46	84	6	169	28	15	26	29	1.96
96266442--96266609	88	1.9	89	82	8	214	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96266538--96266635	42	2.3	42	92	3	162	30	14	27	27	1.95
96275666--96275807	24	5.9	24	70	6	108	31	30	14	23	1.94
96284667--96284732	29	2.2	30	78	7	73	48	9	3	39	1.50
96288556--96288648	46	2.0	46	100	0	186	33	8	23	34	1.85
96296122--96296163	21	2.0	21	95	0	75	30	14	9	45	1.77
96304951--96305008	28	2.1	28	93	0	98	55	10	10	24	1.65
96314486--96314531	23	2.0	23	83	8	58	50	8	6	34	1.59
96314837--96314909	29	2.7	26	77	12	69	57	6	4	31	1.44
96314931--96314993	20	3.0	20	76	13	56	57	4	7	30	1.48
96315066--96315138	22	3.8	20	71	23	57	58	5	2	32	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311