genome.fa.s12.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  141  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47696594--47696703	45	2.6	43	79	11	120	32	29	5	32	1.80
47696684--47696751	16	4.2	16	94	0	118	35	36	0	27	1.58
47696766--47697090	27	12.1	26	79	7	206	27	21	9	40	1.85
47696773--47697119	54	6.5	53	79	7	285	27	21	9	41	1.84
47696773--47697080	161	1.9	161	88	0	463	28	20	9	41	1.84
47696773--47697124	81	4.4	80	76	7	309	27	20	9	41	1.84
47697129--47697323	27	7.2	27	80	4	205	36	17	18	26	1.93
47697137--47697324	54	3.5	54	86	1	261	36	18	19	25	1.94
47697137--47697322	81	2.3	82	84	1	232	37	17	19	25	1.94
47697523--47697605	27	3.1	26	87	5	112	19	21	21	37	1.94
47697915--47697988	27	2.8	27	85	6	89	17	24	21	36	1.95
47698106--47698292	6	30.8	6	75	18	165	20	17	13	48	1.80
47698106--47698292	30	6.4	30	83	9	224	20	17	13	48	1.80
47698106--47698292	85	2.2	85	95	0	329	20	17	13	48	1.80
47698106--47698313	30	7.1	30	81	11	207	20	17	13	48	1.80
47700302--47700841	27	20.0	27	84	4	419	27	22	9	40	1.85
47700302--47700841	54	10.0	54	86	3	597	27	22	9	40	1.85
47700851--47701028	81	2.2	81	85	0	239	35	17	19	26	1.94
47700851--47701046	27	7.3	27	85	0	212	35	17	19	27	1.94
47701245--47701327	27	3.1	26	86	5	94	19	21	20	38	1.93
47701638--47701711	27	2.8	27	85	6	89	17	24	21	36	1.95
47701829--47702015	6	30.8	6	77	16	181	20	17	13	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47701829--47702015	85	2.2	85	95	0	329	20	17	13	48	1.81
47701829--47702015	30	6.4	30	84	11	262	20	17	13	48	1.81
47704322--47704346	13	1.9	13	100	0	50	36	16	8	40	1.77
47709625--47709929	40	7.6	40	85	5	316	26	22	26	25	2.00
47709625--47709929	80	3.8	80	85	2	362	26	22	26	25	2.00
47717522--47717786	40	6.6	40	83	6	252	26	22	26	25	2.00
47720127--47720203	27	3.1	24	76	10	57	32	22	20	24	1.98
47723954--47724104	39	4.0	39	82	13	208	21	24	29	23	1.99
47730690--47730842	39	4.0	39	94	4	260	20	26	30	23	1.99
47730690--47730842	77	2.0	75	92	5	254	20	26	30	23	1.99
47733971--47734188	27	8.0	27	83	2	222	27	22	13	36	1.92
47739584--47739845	40	6.6	40	87	3	307	26	28	20	24	1.99
47739584--47739845	119	2.2	119	82	4	314	26	28	20	24	1.99
47739584--47739845	79	3.3	79	84	4	307	26	28	20	24	1.99
47747327--47747577	53	4.8	53	76	9	207	22	25	16	35	1.95
47747374--47747567	106	1.8	106	85	6	277	23	26	15	34	1.95
47748886--47748973	43	2.0	43	82	8	108	30	32	14	21	1.94
47751879--47751922	21	2.1	21	100	0	88	40	13	18	27	1.88
47752773--47752799	7	3.9	7	100	0	54	14	11	29	44	1.80
47760697--47760789	42	2.2	42	96	1	168	33	24	11	30	1.91
47761017--47761067	25	2.0	25	100	0	102	52	19	15	11	1.73
47770075--47770189	43	2.7	42	79	1	131	30	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47790385--47790609	40	5.7	40	87	4	271	25	21	26	25	2.00
47790424--47790642	80	2.8	78	81	11	207	27	20	26	25	1.99
47798129--47798347	40	5.6	38	84	11	221	25	21	27	26	1.99
47798164--47798347	39	4.7	38	85	11	196	25	21	27	26	1.99
47806249--47806374	37	3.4	37	79	16	145	30	28	20	19	1.97
47815724--47815858	40	3.4	40	94	0	243	29	29	20	20	1.98
47830812--47830974	40	4.1	40	92	2	258	26	27	22	23	2.00
47832352--47832377	13	2.0	13	100	0	52	61	7	0	30	1.24
47833732--47833797	31	2.1	31	82	0	78	19	4	30	45	1.70
47841794--47841908	62	1.9	59	87	5	167	42	2	2	52	1.29
47846636--47846666	16	1.9	16	93	0	53	35	22	0	41	1.54
47846633--47846672	20	2.0	20	85	0	53	37	22	0	40	1.54
47846897--47847112	55	4.0	54	82	6	276	22	25	16	35	1.95
47846905--47847105	108	1.8	110	89	4	318	22	25	17	34	1.96
47857586--47857699	35	3.3	35	77	11	126	40	20	10	28	1.85
47859722--47859772	23	2.4	22	83	9	61	76	1	15	5	1.07
47861016--47861200	40	4.7	40	79	7	173	25	23	25	25	2.00
47861072--47861233	79	2.1	79	81	4	184	25	20	27	26	1.99
47867752--47867796	23	1.9	24	86	4	65	73	2	17	6	1.15
47869035--47869217	39	4.6	41	82	10	213	24	22	27	25	2.00
47886663--47886835	46	3.7	46	77	7	188	30	27	19	22	1.98
47886668--47886836	93	1.8	93	92	0	284	29	28	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47887256--47887315	30	2.0	30	90	0	93	28	25	10	36	1.88
47892945--47893116	60	2.9	60	75	11	165	41	2	2	52	1.29
47916249--47916417	83	2.0	83	95	0	302	24	28	21	24	1.99
47917320--47917534	46	4.6	46	77	10	213	26	27	18	27	1.98
47917320--47917534	94	2.3	94	84	6	276	26	27	18	27	1.98
47920441--47920494	25	2.2	24	90	9	83	72	0	0	27	0.85
47920441--47920509	24	2.9	23	81	12	68	69	0	2	27	1.02
47920859--47920946	30	2.9	30	86	0	95	17	36	27	19	1.94
47929863--47929907	16	2.8	16	75	0	54	24	26	4	44	1.72
47934832--47934937	43	2.5	42	81	6	99	22	29	21	26	1.99
47934857--47934937	43	1.9	43	87	2	119	20	30	23	24	1.99
47936946--47936988	21	2.0	21	100	0	86	27	34	13	23	1.93
47939468--47939499	16	1.9	17	93	6	57	9	0	15	75	1.05
47940037--47940076	19	2.1	19	85	0	53	22	2	12	62	1.42
47949024--47949066	21	2.0	21	86	4	59	34	6	9	48	1.62
47952902--47953079	27	6.6	27	81	3	187	26	15	29	29	1.96
47952902--47953079	54	3.3	55	84	4	227	26	15	29	29	1.96
47960916--47961093	27	6.6	27	83	3	196	26	14	29	29	1.95
47960916--47961093	54	3.3	55	84	4	236	26	14	29	29	1.95
47966922--47966947	3	8.7	3	100	0	52	30	0	0	69	0.89
47968777--47968822	20	2.3	20	75	17	51	23	17	30	28	1.97
47968812--47968986	60	2.9	62	75	13	168	27	19	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47971162--47971282	46	2.6	46	82	5	145	23	27	20	28	1.99
47980570--47980604	17	2.1	17	100	0	70	20	17	11	51	1.75
47986446--47986488	20	2.2	20	95	0	77	25	13	11	48	1.77
47991094--47991146	26	2.0	26	100	0	106	43	15	18	22	1.87
47994262--47994308	21	2.2	22	92	3	78	21	19	38	21	1.94
47995726--47995796	16	4.3	17	80	8	67	9	0	36	53	1.34
47995744--47995800	16	3.5	17	81	9	75	12	0	35	52	1.39
47995923--47995956	16	2.3	14	90	10	50	11	5	32	50	1.63
47996076--47996128	17	3.2	16	91	2	79	15	0	28	56	1.39
47995753--47996232	161	3.0	161	80	10	618	33	2	21	42	1.66
47996251--47996939	126	5.5	126	89	1	1015	37	16	18	27	1.92
48001344--48001434	45	2.0	44	81	6	103	27	16	21	34	1.95
48001402--48001513	41	2.7	43	82	8	124	25	18	27	27	1.98
48006370--48006466	33	2.9	33	84	7	133	24	23	24	26	2.00
48009395--48009434	7	5.7	7	100	0	80	45	0	12	42	1.42
48009395--48009446	21	2.5	21	90	0	77	50	0	9	40	1.35
48012134--48012358	49	4.5	50	83	4	260	29	26	17	26	1.97
48012132--48012364	99	2.3	100	83	4	301	29	27	17	26	1.98
48012121--48012366	101	2.5	99	83	3	316	28	26	17	27	1.98
48016444--48016748	47	6.6	46	68	12	167	23	28	20	28	1.99
48023979--48024286	47	6.6	47	73	13	210	23	28	19	28	1.98
48023979--48024287	140	2.2	137	81	9	340	23	29	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48024074--48024282	94	2.2	92	85	4	267	22	29	20	27	1.98
48029057--48029278	46	4.8	45	73	17	154	26	17	31	24	1.97
48031332--48031400	36	1.9	36	84	0	93	31	8	18	40	1.81
48032053--48032134	17	4.8	17	76	0	74	29	8	17	45	1.78
48032053--48032134	34	2.4	34	75	0	83	29	8	17	45	1.78
48034666--48034888	46	4.7	46	78	6	207	23	26	19	30	1.98
48034666--48034888	94	2.4	94	85	2	295	23	26	19	30	1.98
48035537--48035579	20	2.3	18	81	14	52	37	20	0	41	1.53
48046005--48046180	40	4.5	40	87	6	236	25	28	22	22	1.99
48046005--48046180	78	2.2	79	86	6	234	25	28	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311