genome.fa.s12.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  139  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47088940--47088975	16	2.3	15	90	4	54	36	2	0	61	1.11
47090774--47090939	79	2.2	76	84	4	208	54	7	9	28	1.61
47093933--47093963	16	1.9	16	93	0	53	45	3	6	45	1.45
47094634--47094755	61	2.0	61	93	0	208	31	24	13	31	1.93
47096786--47096823	13	2.8	13	92	8	58	42	7	10	39	1.69
47099235--47099267	17	1.9	17	100	0	66	39	0	18	42	1.50
47102152--47102194	18	2.3	18	84	4	59	67	2	4	25	1.22
47103051--47103111	18	3.4	18	73	8	61	24	0	3	72	1.00
47103040--47103102	16	3.8	17	71	21	62	19	0	3	77	0.90
47103341--47103377	18	2.1	18	94	0	65	35	8	0	56	1.29
47105479--47105544	22	3.0	22	86	4	89	30	16	28	24	1.97
47113890--47114184	47	6.3	47	91	0	482	27	30	8	33	1.86
47127429--47127499	22	3.2	22	80	7	90	30	15	29	23	1.95
47130091--47130128	16	2.4	16	83	12	51	50	2	0	47	1.15
47133523--47133560	19	2.0	19	100	0	76	36	10	15	36	1.82
47134500--47134533	16	2.1	16	100	0	68	52	0	5	41	1.25
47134763--47134926	55	3.0	55	80	11	192	36	17	21	23	1.95
47141015--47141422	71	5.7	71	86	7	515	57	0	9	32	1.37
47141260--47141300	21	2.0	20	86	13	57	58	0	4	36	1.20
47141790--47141855	30	2.2	30	86	0	87	28	30	25	15	1.96
47141844--47141873	15	2.0	15	100	0	60	26	33	20	20	1.97
47142846--47142923	38	2.1	38	85	0	102	34	26	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47147093--47147243	53	2.8	54	80	3	187	24	22	19	33	1.97
47151470--47151576	43	2.5	43	84	1	144	26	27	21	25	1.99
47151954--47152052	30	3.3	30	86	0	144	26	48	7	18	1.73
47152508--47152717	25	8.6	25	71	14	82	32	6	4	56	1.44
47152587--47152759	78	2.2	77	79	9	181	31	6	4	57	1.44
47162995--47163366	73	5.1	73	89	3	556	29	16	21	32	1.96
47163002--47163366	145	2.5	145	92	1	581	29	16	21	32	1.96
47163351--47163384	16	2.1	16	88	0	50	17	8	2	70	1.25
47163280--47163601	89	3.6	89	92	1	495	27	14	16	40	1.88
47163440--47163473	16	2.1	16	88	0	50	17	8	2	70	1.25
47163529--47163562	16	2.1	16	94	0	59	20	5	0	73	1.04
47163302--47163657	178	2.0	178	84	6	470	28	14	17	39	1.89
47164445--47164499	18	3.4	18	65	27	50	25	49	5	20	1.70
47164435--47164534	30	3.3	30	90	2	164	27	50	5	18	1.67
47164475--47164529	18	3.3	18	66	23	57	21	47	7	23	1.76
47165081--47165225	25	5.7	25	72	15	91	32	7	4	55	1.49
47165292--47165347	25	2.3	24	79	14	62	37	16	3	42	1.65
47170656--47170772	39	3.0	40	88	5	184	24	29	22	23	1.99
47174875--47175133	99	2.7	99	83	8	281	25	29	16	28	1.97
47174875--47175158	96	3.0	94	78	10	274	24	28	17	29	1.97
47178189--47178254	19	3.2	21	77	16	66	37	18	7	36	1.79
47178192--47178236	22	2.0	22	86	4	63	37	17	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47178215--47178288	19	3.9	19	92	3	132	36	17	10	35	1.85
47178208--47178288	37	2.2	38	89	8	132	35	18	9	35	1.84
47204563--47204599	18	2.0	19	85	15	51	51	10	0	37	1.37
47227078--47227300	40	5.6	39	79	7	207	23	28	21	26	1.99
47227043--47227300	40	6.5	38	77	10	200	23	28	21	26	1.99
47227232--47227309	40	1.9	41	82	10	97	26	28	20	24	1.99
47232022--47232206	40	4.7	40	81	7	191	24	23	27	24	2.00
47232075--47232239	79	2.1	79	83	6	201	26	21	27	24	1.99
47234938--47234985	25	1.9	25	86	0	69	33	25	16	25	1.96
47235024--47235080	9	5.9	9	73	15	51	35	8	21	35	1.84
47235022--47235092	20	3.5	20	94	0	124	35	11	21	32	1.89
47235033--47235087	11	5.4	11	70	16	55	36	12	20	30	1.90
47235139--47235254	22	5.1	23	91	5	184	28	20	20	30	1.98
47235138--47235275	22	6.0	24	87	10	182	28	21	21	28	1.98
47235463--47235526	31	2.1	31	90	0	101	35	15	23	25	1.94
47243185--47243234	20	2.5	20	93	3	84	34	10	22	34	1.87
47243185--47243244	20	3.0	20	85	7	61	35	11	20	33	1.88
47243278--47243393	23	5.1	23	90	1	173	27	20	20	31	1.98
47243603--47243665	30	2.1	31	87	3	92	36	15	22	25	1.94
47244779--47244936	42	3.6	42	84	7	174	29	25	14	29	1.95
47244848--47244983	49	2.8	48	86	4	177	29	26	14	29	1.95
47245051--47245168	31	3.8	31	82	0	146	27	27	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47245151--47245272	50	2.4	51	90	2	201	26	22	14	36	1.93
47249331--47249420	16	5.4	17	85	10	116	38	11	13	36	1.80
47249338--47249420	33	2.5	33	88	9	116	38	12	13	36	1.82
47249333--47249429	17	5.6	19	79	18	106	37	11	13	38	1.81
47255008--47255082	21	3.7	20	72	20	66	77	0	16	6	0.97
47256033--47256172	43	3.3	43	67	18	121	32	20	20	27	1.97
47256025--47256465	84	5.3	84	86	6	592	30	23	21	24	1.99
47256023--47256465	166	2.6	166	84	8	585	30	23	21	24	1.99
47256465--47257427	78	12.3	78	86	2	1238	33	16	22	26	1.96
47257454--47257748	78	3.8	78	90	0	430	31	20	23	24	1.98
47257255--47257626	199	1.9	199	87	3	552	32	18	23	26	1.97
47257192--47257704	277	1.9	277	88	1	787	32	18	23	24	1.97
47257688--47257915	45	5.1	45	72	12	182	32	16	25	25	1.96
47258248--47258325	19	4.4	19	87	10	94	37	12	12	37	1.82
47258256--47258327	19	3.9	19	91	8	123	37	11	15	36	1.83
47258256--47258337	19	4.3	21	82	14	67	37	9	15	36	1.81
47259747--47259772	12	2.2	12	100	0	52	38	0	15	46	1.46
47265214--47265257	22	2.0	22	100	0	88	18	4	27	50	1.66
47270159--47270212	25	2.2	25	100	0	108	24	11	37	27	1.89
47279997--47280041	22	2.0	22	86	0	63	33	8	0	57	1.30
47282784--47282832	21	2.3	22	80	16	59	42	2	2	53	1.24
47287327--47287425	20	5.0	20	71	14	71	10	26	21	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47290352--47290621	40	6.8	40	93	0	416	25	21	28	24	1.99
47291476--47291534	29	2.0	29	100	0	118	47	13	10	28	1.75
47296475--47296729	40	6.4	40	89	2	354	23	22	27	26	1.99
47304647--47304890	40	6.1	40	90	1	348	21	22	28	27	1.99
47327304--47327789	27	18.0	27	85	3	548	29	22	7	40	1.82
47327806--47327920	27	4.3	27	90	0	176	36	20	20	22	1.95
47327806--47327935	54	2.4	54	88	1	181	35	18	21	24	1.96
47328139--47328220	27	3.1	26	87	5	110	18	24	21	35	1.96
47328308--47328366	22	2.7	22	81	0	64	20	25	22	32	1.98
47328531--47328604	27	2.8	27	83	6	80	17	22	21	37	1.94
47328722--47329078	6	58.8	6	75	16	310	20	17	13	48	1.81
47328722--47329078	85	4.2	85	85	9	360	20	17	13	48	1.81
47330916--47330940	9	2.8	9	100	0	50	48	0	0	52	1.00
47330980--47331044	34	2.0	32	84	6	85	30	4	21	43	1.73
47336536--47336567	11	2.9	11	95	0	55	37	0	15	46	1.46
47336536--47336567	6	5.7	6	85	14	50	37	0	15	46	1.46
47338207--47338343	54	2.5	55	81	6	165	37	20	8	32	1.83
47338207--47338344	27	5.2	26	81	4	134	37	20	8	33	1.83
47338243--47338371	54	2.4	54	80	2	143	38	17	11	32	1.85
47341446--47341476	15	2.1	15	100	0	62	25	12	12	48	1.77
47351355--47351386	15	2.1	15	94	0	55	15	6	9	68	1.36
47352541--47352580	19	2.1	19	86	9	55	55	5	5	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47357422--47357446	12	2.1	12	100	0	50	24	0	0	76	0.80
47359294--47359355	26	2.3	27	83	10	83	37	29	8	25	1.85
47359460--47359575	28	4.2	28	83	2	146	21	22	20	35	1.96
47364291--47364495	27	7.6	27	86	3	259	26	15	27	30	1.96
47364292--47364495	109	1.9	108	89	3	320	26	15	27	30	1.96
47372530--47372733	27	7.6	27	86	2	257	26	15	27	29	1.96
47376417--47376466	24	2.1	24	81	7	57	38	20	4	38	1.71
47377532--47377660	46	2.8	46	80	11	158	30	27	20	21	1.98
47385009--47385180	93	1.8	93	96	0	317	27	27	21	22	1.99
47385002--47385177	46	3.8	46	80	12	225	28	27	21	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311