genome.fa.s12.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  124  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41562726--41562786	30	2.0	30	83	0	77	31	22	8	37	1.84
41568527--41568571	14	3.3	14	80	20	51	57	8	8	24	1.57
41573025--41573055	16	1.9	16	93	0	53	35	22	0	41	1.54
41573022--41573061	20	2.0	20	85	0	53	37	22	0	40	1.54
41573247--41573501	55	4.8	52	77	10	198	20	24	16	38	1.93
41580619--41580649	16	1.9	16	93	0	53	35	22	0	41	1.54
41580616--41580655	20	2.0	20	85	0	53	37	22	0	40	1.54
41580842--41581095	55	4.8	53	80	8	218	21	25	16	36	1.94
41594419--41594508	28	3.2	27	84	7	110	21	23	23	32	1.98
41594429--41594519	27	3.2	28	82	4	85	23	25	19	31	1.98
41594419--41594533	55	2.1	56	82	8	137	20	23	21	34	1.96
41594662--41594691	10	3.0	10	100	0	60	0	20	30	50	1.49
41594982--41595020	19	2.1	19	85	0	51	15	5	7	71	1.26
41596358--41596536	49	3.7	49	82	1	207	24	26	19	30	1.98
41598815--41598840	13	2.0	13	100	0	52	15	30	38	15	1.88
41601267--41601497	40	5.8	40	87	2	311	37	18	26	16	1.92
41601276--41601344	20	3.5	20	74	7	77	30	21	33	14	1.93
41601267--41601496	120	1.9	120	88	0	343	37	18	26	16	1.93
41604370--41604489	46	2.6	44	84	7	143	23	25	17	34	1.96
41608255--41608287	17	1.9	17	93	0	57	24	15	18	42	1.88
41610544--41610687	40	3.6	40	93	3	238	23	23	28	24	2.00
41610544--41610690	79	1.8	79	89	4	233	23	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41615401--41615433	14	2.2	16	89	10	52	18	12	0	69	1.18
41617953--41618128	50	3.5	49	82	7	203	25	17	28	28	1.97
41617942--41618128	101	1.9	99	85	4	259	24	17	29	28	1.97
41617953--41618139	99	1.9	99	82	7	218	25	18	27	28	1.98
41620626--41620685	30	2.0	30	84	12	79	30	23	6	40	1.80
41629819--41630087	40	6.7	40	96	0	502	21	27	20	29	1.98
41638423--41638691	40	6.7	40	96	0	502	21	27	20	29	1.98
41641898--41642155	40	6.5	40	86	0	347	36	17	28	17	1.92
41641898--41642153	80	3.2	80	89	1	388	36	16	28	17	1.92
41641892--41642155	119	2.2	120	87	0	368	37	16	28	17	1.92
41642018--41642155	20	6.9	20	66	4	82	36	18	28	16	1.92
41641921--41642155	79	2.9	79	89	6	366	37	17	28	17	1.92
41643786--41643868	36	2.3	36	85	0	112	36	26	8	28	1.86
41644795--41644852	28	2.1	28	96	0	107	39	8	27	24	1.84
41648039--41648113	20	3.8	20	87	6	102	36	9	18	36	1.83
41648163--41648298	52	2.7	51	92	5	215	28	20	23	27	1.99
41648163--41648298	26	5.3	26	86	3	181	28	20	23	27	1.99
41650506--41650609	53	2.0	53	80	0	118	21	25	16	36	1.94
41657173--41657396	104	2.2	104	93	1	378	17	19	31	31	1.95
41657315--41657466	71	2.1	72	92	1	252	23	17	29	30	1.97
41664815--41664865	26	2.0	26	96	0	93	11	23	35	29	1.90
41664737--41664959	103	2.2	104	92	2	369	17	18	31	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41664878--41665029	71	2.1	72	92	1	252	23	17	29	30	1.97
41668125--41668331	53	3.8	54	73	4	175	22	23	15	37	1.93
41679569--41679689	51	2.4	51	84	0	143	25	18	28	27	1.98
41679597--41679707	51	2.2	51	85	3	143	27	15	28	27	1.96
41684964--41685023	27	2.3	26	85	2	75	35	20	23	21	1.96
41686884--41686951	28	2.4	28	90	0	100	33	10	26	29	1.89
41686889--41686962	28	2.6	28	84	0	85	36	9	22	31	1.86
41703040--41703265	50	4.5	49	80	9	233	31	25	17	25	1.97
41710513--41710595	26	3.3	26	64	24	68	33	24	14	27	1.94
41711816--41712222	216	1.9	216	94	1	726	36	20	17	24	1.94
41714899--41714948	26	1.9	26	100	0	100	46	34	4	16	1.65
41718028--41718052	13	1.9	13	100	0	50	76	16	0	8	1.02
41721220--41721408	50	3.7	51	79	4	186	24	17	25	32	1.97
41724840--41725015	46	3.8	45	78	10	185	21	22	28	27	1.99
41724837--41725007	93	1.8	93	91	0	279	21	22	29	26	1.99
41727935--41727998	15	4.4	15	84	11	89	10	15	12	60	1.58
41730367--41730542	46	3.8	45	81	10	212	21	21	29	28	1.98
41730364--41730534	93	1.8	93	94	0	306	21	21	29	27	1.98
41732882--41732980	28	3.5	29	86	9	125	27	15	28	29	1.96
41740892--41740989	28	3.6	27	85	10	119	26	15	28	29	1.96
41745035--41745072	18	2.1	19	85	5	51	18	5	2	73	1.14
41748515--41748864	177	2.0	177	98	0	673	36	9	19	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41762983--41763124	37	3.8	37	86	3	205	26	28	18	26	1.98
41763001--41763139	74	1.9	74	95	0	251	25	27	18	28	1.98
41763275--41763856	48	11.9	48	92	3	948	31	27	6	34	1.82
41773696--41773918	94	2.4	94	81	7	238	27	19	28	24	1.99
41775176--41775539	48	7.7	46	73	14	178	28	17	29	24	1.97
41775361--41775540	97	1.8	98	82	5	231	26	18	31	23	1.97
41777158--41777415	40	6.5	40	85	4	319	26	27	22	23	1.99
41785189--41785442	39	6.5	40	89	4	360	25	28	23	22	1.99
41788102--41788141	21	2.0	20	90	5	62	15	40	27	17	1.89
41789284--41789315	16	2.0	16	100	0	64	37	6	31	25	1.81
41802217--41802288	29	2.5	29	83	0	90	48	2	13	34	1.57
41802336--41802536	59	3.4	58	88	4	307	52	7	5	34	1.53
41806517--41806567	18	2.8	18	78	0	57	62	0	1	35	1.06
41807328--41807361	12	2.9	12	86	4	52	32	0	0	67	0.91
41807485--41807547	30	2.1	31	88	8	94	58	6	6	28	1.47
41808794--41808837	23	1.9	23	81	9	54	38	2	2	56	1.24
41809961--41810001	16	2.6	16	88	0	55	48	14	24	12	1.78
41812572--41812890	158	2.0	158	98	0	620	33	16	19	30	1.94
41815284--41815323	14	2.9	14	84	0	53	2	25	0	72	0.97
41820599--41820841	47	5.1	47	90	3	369	31	9	30	28	1.88
41820599--41820841	96	2.5	94	91	2	369	31	9	30	28	1.88
41820959--41821037	37	2.1	37	88	0	113	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41824104--41824142	15	2.5	15	91	4	60	15	12	15	56	1.68
41826348--41826585	49	4.8	50	84	2	291	26	18	26	29	1.98
41826445--41826528	28	3.2	28	65	25	83	23	16	29	29	1.96
41835560--41835595	16	2.2	16	90	0	54	38	2	2	55	1.29
41835782--41835869	43	2.0	43	95	0	158	29	15	18	36	1.92
41837709--41837748	20	2.0	20	100	0	80	55	15	10	20	1.68
41841793--41841833	17	2.3	18	79	8	57	48	0	0	51	1.00
41841852--41841900	9	5.8	9	79	11	59	36	0	2	61	1.08
41841906--41841939	17	2.0	17	88	0	50	58	0	0	41	0.98
41842764--41842811	21	2.3	21	96	0	87	47	4	12	35	1.60
41844598--41844655	29	2.0	29	100	0	116	27	0	24	48	1.51
41850337--41850425	27	3.3	27	78	4	92	41	16	10	31	1.82
41850382--41850434	27	2.0	27	85	7	72	37	18	11	32	1.87
41850439--41850643	27	7.6	27	83	4	252	30	22	5	40	1.78
41850512--41850814	27	11.1	27	80	6	119	35	21	8	34	1.84
41850441--41850641	81	2.5	82	90	3	300	30	23	5	40	1.78
41850441--41850668	81	2.8	82	85	1	289	31	22	6	39	1.79
41850620--41850843	54	4.1	54	70	8	175	37	20	9	32	1.85
41850378--41850681	81	3.8	81	76	0	232	32	23	7	36	1.82
41850620--41850822	27	7.4	27	79	4	138	37	19	9	33	1.84
41850863--41850941	27	2.9	27	85	9	106	32	21	22	22	1.98
41851744--41851841	26	3.8	26	91	1	153	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41851986--41852073	42	2.1	42	91	0	140	30	13	19	36	1.90
41852101--41852179	31	2.5	31	91	0	131	30	17	25	26	1.97
41854296--41854517	68	3.4	66	73	10	186	23	27	15	32	1.95
41857507--41857689	41	4.7	40	73	17	145	28	26	15	28	1.96
41863840--41863864	12	2.1	12	100	0	50	8	24	40	28	1.83
41865958--41866052	40	2.4	40	82	8	113	25	27	17	29	1.98
41879923--41879960	15	2.4	16	86	4	51	23	2	28	44	1.67
41883317--41883354	20	1.9	20	94	0	67	44	7	7	39	1.63
41883940--41884088	74	2.0	74	97	0	280	19	6	14	59	1.56
41891676--41891945	142	1.9	142	86	3	382	29	22	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311