genome.fa.s12.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  151  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51439882--51439938	16	3.6	16	95	0	87	29	0	36	33	1.58
51440184--51440218	18	2.0	17	88	5	52	54	0	0	45	0.99
51440318--51440359	15	2.7	16	82	14	52	52	2	0	45	1.13
51440071--51440383	154	2.0	155	95	2	567	44	3	5	46	1.41
51440327--51440368	15	2.9	15	82	10	52	52	0	0	47	1.00
51440316--51440619	119	2.6	120	89	6	460	50	5	2	41	1.39
51440132--51440444	154	2.0	152	82	7	371	47	4	3	44	1.40
51440436--51440487	15	3.6	15	80	12	56	53	1	0	44	1.11
51440413--51440503	44	2.1	43	81	6	103	53	3	2	40	1.29
51440572--51440610	17	2.5	15	80	15	51	51	0	5	43	1.24
51440577--51440610	17	2.0	17	94	0	59	50	0	5	44	1.26
51440643--51440836	93	2.1	91	88	5	284	47	4	4	44	1.41
51450814--51450998	79	2.3	81	83	7	227	25	27	22	24	2.00
51450814--51450998	40	4.7	40	82	7	225	25	27	22	24	2.00
51458862--51459046	79	2.3	82	84	7	238	25	27	22	24	2.00
51458843--51459046	40	5.1	40	82	8	238	25	27	22	25	2.00
51472222--51472354	71	1.9	71	96	0	248	33	6	18	42	1.75
51472474--51472644	47	3.7	48	75	18	141	29	19	26	23	1.99
51472475--51472644	94	1.8	92	86	9	229	29	20	26	24	1.99
51473900--51473939	21	2.0	20	90	5	62	10	35	32	22	1.87
51475078--51475122	18	2.5	19	78	10	58	44	11	0	44	1.39
51480610--51480642	16	2.1	16	100	0	66	24	33	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51487877--51488024	52	2.9	51	90	4	228	28	14	29	27	1.96
51492738--51492920	79	2.3	81	84	7	232	25	27	22	24	2.00
51492717--51492920	40	5.1	40	82	8	238	25	27	22	24	2.00
51493520--51493607	37	2.4	37	100	0	176	32	22	14	29	1.94
51494198--51494255	25	2.5	24	81	13	68	8	18	1	70	1.21
51498940--51498985	20	2.3	20	84	0	56	36	10	2	50	1.50
51499583--51499627	20	2.2	20	84	7	56	40	13	2	44	1.56
51498647--51499919	643	2.0	643	91	1	2043	33	20	9	35	1.86
51502380--51502430	26	2.0	26	92	0	84	29	21	17	31	1.96
51505570--51505613	17	2.5	19	82	14	58	31	20	9	38	1.84
51506845--51506965	41	3.0	41	85	0	170	28	27	20	23	1.99
51507203--51507267	27	2.4	26	82	5	67	30	13	21	33	1.92
51507225--51507429	27	7.6	27	78	4	135	30	10	19	40	1.84
51507421--51507501	27	3.0	25	80	8	81	30	19	16	33	1.94
51528000--51528047	20	2.5	20	86	3	62	64	2	6	27	1.28
51528042--51528104	27	2.3	26	76	10	63	50	11	0	38	1.38
51528071--51528100	15	2.0	15	93	0	51	40	10	0	50	1.36
51529512--51529587	6	12.8	6	77	13	61	77	1	2	18	0.95
51529512--51529587	10	7.0	11	76	14	70	77	1	2	18	0.95
51529511--51529585	25	2.9	25	82	13	73	77	1	4	17	0.99
51529512--51529585	15	5.3	15	77	19	63	78	1	2	17	0.94
51533309--51533371	27	2.3	26	76	10	63	50	11	0	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51533338--51533367	15	2.0	15	93	0	51	40	10	0	50	1.36
51533747--51533805	29	2.0	29	80	6	66	28	33	15	22	1.94
51545373--51545545	46	3.7	46	77	10	190	22	20	27	30	1.98
51545370--51545540	93	1.8	93	91	0	279	22	20	28	29	1.98
51556109--51556280	46	3.7	46	80	9	206	22	20	27	29	1.98
51556106--51556275	92	1.8	93	92	1	288	21	20	28	28	1.98
51562775--51562824	23	2.2	23	82	13	59	58	2	4	36	1.29
51570999--51571140	47	3.0	47	94	1	241	28	12	14	43	1.82
51578811--51578952	47	3.0	47	90	1	223	29	14	13	42	1.83
51579758--51580109	45	7.9	45	89	2	507	24	21	28	26	1.99
51582386--51582448	27	2.3	27	83	0	72	25	22	22	30	1.99
51586588--51586615	6	4.7	6	100	0	56	17	28	0	53	1.44
51594530--51594765	119	2.0	119	92	0	391	25	25	14	33	1.94
51599306--51599352	19	2.3	20	82	10	60	36	0	14	48	1.44
51599706--51600094	101	3.9	98	78	7	345	25	16	26	31	1.97
51599698--51600092	151	2.6	151	93	0	682	25	16	25	31	1.97
51599701--51600096	50	7.9	50	77	4	384	25	16	26	31	1.97
51600295--51600326	16	2.0	16	93	0	55	46	0	18	34	1.49
51606288--51606516	27	8.5	27	74	10	112	31	14	16	37	1.89
51606365--51606544	27	6.7	27	79	12	176	31	11	17	38	1.86
51606308--51606544	54	4.4	52	77	9	176	32	12	17	37	1.88
51612849--51613119	48	5.6	48	78	6	262	29	17	28	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51612836--51613120	144	2.0	144	83	5	362	29	17	27	25	1.97
51616861--51616904	22	2.0	22	100	0	88	31	4	36	27	1.77
51621497--51621679	78	2.3	81	82	9	225	24	22	27	25	2.00
51621496--51621679	40	4.7	40	83	8	225	24	22	27	25	2.00
51621549--51621712	78	2.1	77	83	7	197	26	21	26	25	1.99
51629549--51629732	40	4.6	41	83	11	206	24	22	27	25	2.00
51629549--51629732	79	2.3	80	84	6	223	24	22	27	25	2.00
51629602--51629765	79	2.1	78	84	5	206	26	20	27	25	1.99
51629562--51629765	39	5.2	40	78	10	163	26	21	26	25	1.99
51632245--51632290	23	2.0	23	100	0	92	56	8	8	26	1.58
51657347--51657519	47	3.8	45	77	7	161	20	21	30	27	1.98
51657352--51657525	45	3.8	44	76	9	188	20	20	30	28	1.98
51660427--51660505	15	5.4	15	77	10	83	10	17	13	58	1.63
51660418--51660504	29	3.0	29	81	8	95	10	17	16	56	1.67
51662420--51662595	46	3.8	46	78	4	219	21	21	29	28	1.98
51662416--51662587	93	1.8	93	92	0	290	20	21	30	27	1.98
51682933--51682968	2	18.0	2	100	0	72	50	0	50	0	1.00
51683439--51683512	21	3.6	20	77	12	69	64	1	1	32	1.10
51683500--51683558	18	3.3	18	85	0	73	61	6	5	27	1.43
51683533--51683574	8	4.9	9	85	14	54	71	2	0	26	0.98
51684311--51684370	20	3.1	19	81	16	61	33	0	3	63	1.11
51684333--51684441	10	11.6	9	74	15	62	29	0	3	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51684333--51684424	29	3.2	28	75	15	82	31	1	2	65	1.12
51684334--51684443	20	5.8	19	77	9	82	29	0	3	66	1.15
51684382--51684443	10	6.6	10	87	10	78	24	0	3	72	0.99
51685110--51685149	21	1.9	21	84	0	53	27	2	17	52	1.57
51685678--51685721	21	2.0	22	83	12	56	18	9	9	63	1.49
51690124--51690195	24	3.0	24	85	2	90	26	12	27	33	1.92
51690222--51690284	24	2.6	24	82	0	72	19	15	36	28	1.92
51693199--51693358	43	3.7	43	79	8	173	25	16	25	31	1.97
51693201--51693358	85	1.8	86	85	4	221	25	16	25	31	1.96
51694094--51694130	11	3.5	11	82	17	51	16	0	29	54	1.43
51703990--51704147	43	3.7	42	82	5	183	24	18	26	31	1.98
51708446--51708479	11	3.1	11	88	12	52	8	2	23	64	1.36
51724915--51724977	13	4.5	13	77	14	72	9	38	34	17	1.82
51725927--51726020	33	2.9	32	76	7	91	37	24	9	28	1.87
51733100--51733323	40	5.6	40	82	3	261	24	22	26	26	2.00
51733104--51733323	83	2.7	80	85	6	259	24	23	26	25	2.00
51734833--51735040	101	2.1	101	96	0	380	30	23	9	37	1.86
51736832--51736888	23	2.5	23	82	2	80	38	33	3	24	1.73
51759934--51760089	43	3.6	44	74	20	132	26	19	23	30	1.98
51761377--51761457	27	2.8	31	78	9	82	35	18	23	22	1.95
51761421--51761611	67	2.8	69	89	6	298	33	23	25	18	1.97
51761543--51761594	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51770951--51771133	79	2.3	81	84	7	232	25	27	22	24	2.00
51770930--51771133	40	5.1	40	82	8	238	25	27	22	24	2.00
51780990--51781101	49	2.3	49	80	6	120	31	16	29	23	1.96
51783993--51784140	57	2.6	58	79	5	176	32	20	17	29	1.96
51789469--51789725	40	6.5	40	86	3	342	25	22	26	26	2.00
51789465--51789692	120	1.9	119	92	2	386	25	21	25	26	2.00
51789465--51789725	119	2.2	119	88	4	384	26	21	25	26	2.00
51794432--51794621	40	4.8	40	88	0	263	20	30	15	34	1.94
51794432--51794621	80	2.4	80	90	0	290	20	30	15	34	1.94
51794432--51794533	20	5.1	20	68	13	84	18	30	18	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311