genome.fa.s12.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  126  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42404499--42404677	95	1.9	96	90	1	288	26	21	28	23	1.99
42404503--42404725	48	4.7	47	72	16	147	26	21	28	23	1.99
42404444--42404725	143	2.0	144	85	4	383	27	21	27	24	1.99
42404451--42404711	95	2.7	95	82	2	283	27	21	26	23	1.99
42411711--42411747	16	2.4	15	90	4	56	45	0	0	54	1.00
42412430--42412464	17	2.0	18	88	5	54	28	5	2	62	1.32
42414643--42414675	5	6.8	5	93	6	59	84	0	15	0	0.61
42418226--42418391	27	6.1	27	82	0	179	31	19	21	27	1.97
42418526--42418603	27	2.9	26	85	10	97	21	23	23	32	1.98
42419832--42419871	18	2.1	18	86	9	53	35	2	10	52	1.48
42427955--42428117	44	3.6	44	70	6	130	27	28	17	26	1.98
42427952--42428166	91	2.4	91	91	0	349	26	27	19	26	1.99
42427955--42428258	47	6.6	45	70	13	185	26	28	18	26	1.98
42433964--42434303	47	7.2	47	76	10	295	25	30	18	25	1.98
42433953--42434310	96	3.8	92	77	11	323	25	30	18	25	1.98
42433953--42434364	142	2.9	141	79	6	426	25	29	18	25	1.98
42439560--42439915	142	2.5	140	80	4	378	25	30	18	25	1.98
42439560--42439919	47	7.7	46	77	9	295	25	30	18	25	1.98
42439594--42439919	96	3.4	95	81	7	369	24	30	18	26	1.98
42439690--42439965	142	2.0	142	83	1	349	24	30	19	26	1.98
42443350--42443378	5	6.0	5	92	8	51	20	0	0	79	0.74
42443349--42443378	14	2.1	14	100	0	60	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446615--42446659	21	2.1	21	87	0	63	20	37	13	28	1.90
42449958--42450114	43	3.7	43	77	9	142	26	18	24	29	1.98
42452479--42452510	17	1.9	16	93	6	55	25	37	18	18	1.94
42453474--42453507	13	2.7	13	90	4	52	52	8	20	17	1.71
42456310--42456654	41	8.4	41	76	7	276	19	15	23	40	1.90
42456310--42456647	82	4.1	82	83	3	365	19	15	23	41	1.90
42456297--42456610	165	1.9	165	83	2	407	20	16	23	39	1.92
42456648--42456914	41	6.5	41	77	5	243	20	15	25	38	1.92
42456556--42456761	105	1.9	107	86	9	298	19	15	25	39	1.91
42456516--42456781	146	1.8	146	82	4	349	18	14	26	40	1.89
42456462--42456809	187	1.9	186	84	6	479	18	15	25	40	1.90
42456648--42456914	82	3.3	82	80	2	304	20	15	25	38	1.92
42456648--42456920	123	2.2	123	79	8	306	20	15	24	39	1.91
42458419--42458511	47	2.0	47	97	0	177	32	9	18	39	1.83
42469592--42469638	18	2.6	18	76	10	51	59	0	2	38	1.09
42471299--42471334	18	2.1	18	89	5	56	5	5	2	86	0.79
42476282--42476316	3	12.0	3	87	6	54	65	0	2	31	1.07
42478058--42478324	51	5.4	51	67	14	175	28	22	17	31	1.96
42478058--42478375	97	3.3	97	83	1	390	27	22	17	31	1.97
42478109--42478194	46	1.9	45	85	4	120	29	23	17	30	1.97
42478309--42478857	143	3.8	143	84	1	706	28	20	20	31	1.97
42484863--42484928	3	21.7	3	81	9	80	63	3	1	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42504353--42504393	20	2.0	20	85	0	55	39	14	9	36	1.79
42506455--42506787	50	6.8	50	80	8	373	27	19	28	24	1.98
42510426--42510671	55	4.6	53	79	10	245	35	18	25	20	1.95
42510434--42510634	108	1.8	110	87	4	300	34	17	25	21	1.96
42513209--42513787	180	3.2	179	87	1	820	29	24	16	29	1.97
42523536--42523707	46	3.7	46	78	13	199	20	19	29	29	1.97
42523529--42523700	93	1.8	93	93	0	299	21	20	29	28	1.98
42538964--42539071	26	4.2	26	89	0	162	33	7	23	36	1.83
42540251--42540280	8	3.8	8	90	0	51	43	26	26	3	1.70
42548040--42548098	29	2.0	29	86	0	82	27	8	18	45	1.78
42548455--42548494	21	1.9	21	85	10	55	35	5	15	45	1.68
42552263--42552287	2	12.5	2	100	0	50	48	0	0	52	1.00
42568977--42569107	46	2.8	46	82	3	156	31	22	22	22	1.99
42571665--42571823	45	3.6	45	81	9	175	26	27	22	23	1.99
42571752--42571978	43	5.2	43	84	6	262	32	30	22	13	1.93
42576743--42576851	39	2.8	40	82	1	130	41	22	18	17	1.90
42585009--42585055	22	2.1	22	100	0	94	53	23	0	23	1.47
42592801--42592970	46	3.7	45	75	13	175	22	19	27	30	1.98
42592795--42592965	93	1.8	93	91	0	279	21	19	28	30	1.98
42595488--42595753	104	2.6	104	92	3	430	18	20	30	29	1.97
42657716--42657907	43	4.6	41	79	12	205	22	27	21	27	1.99
42663374--42663494	29	4.2	28	73	21	99	23	13	29	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42666644--42666729	46	1.9	45	85	4	120	31	29	18	20	1.97
42667132--42667191	30	2.0	30	90	0	93	30	25	8	36	1.85
42678951--42679009	10	5.9	10	78	7	66	22	10	1	66	1.31
42687389--42687453	13	4.9	13	74	20	55	18	3	3	75	1.07
42687389--42687453	27	2.4	27	80	14	73	18	3	3	75	1.07
42690047--42690077	16	1.9	16	93	0	53	80	0	16	3	0.83
42690709--42690767	10	5.9	10	80	7	75	22	10	1	66	1.31
42693940--42693984	22	2.0	24	86	8	67	37	13	2	46	1.55
42695796--42695843	20	2.4	19	79	6	51	37	10	6	45	1.64
42698251--42698334	27	3.1	27	75	3	80	30	11	26	30	1.92
42701051--42701109	31	1.9	31	89	0	91	38	8	13	38	1.75
42703686--42703750	32	2.0	32	100	0	130	35	0	21	43	1.53
42704428--42704549	53	2.3	53	81	7	140	36	12	24	27	1.91
42704430--42704580	27	5.7	26	77	9	144	33	13	26	27	1.93
42711460--42711535	39	1.9	39	81	5	91	42	7	0	50	1.31
42714544--42714644	50	2.0	52	86	7	145	42	1	8	46	1.46
42716234--42716563	126	2.6	125	78	7	303	33	30	7	29	1.84
42716234--42716558	63	5.2	63	79	4	273	33	30	7	29	1.84
42718553--42718596	16	2.7	16	89	3	61	43	22	0	34	1.54
42718784--42718994	117	1.8	117	86	0	305	24	9	22	43	1.82
42719864--42719964	51	2.0	51	86	0	139	32	7	24	34	1.85
42724202--42724253	20	2.8	18	78	21	63	51	3	1	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42727330--42727503	48	3.6	47	74	12	133	27	16	31	24	1.97
42728260--42728317	30	1.9	30	96	0	107	15	24	31	29	1.95
42728763--42728804	22	2.0	21	85	4	57	11	42	26	19	1.85
42730052--42730077	2	13.0	2	100	0	52	50	0	0	50	1.00
42752618--42752880	115	2.3	115	91	0	409	40	14	13	31	1.84
42754397--42754426	14	2.1	14	93	0	51	63	0	3	33	1.11
42754760--42754787	9	3.1	9	100	0	56	35	53	0	10	1.36
42754785--42754849	13	5.3	13	80	17	77	38	49	0	12	1.41
42754792--42754858	35	1.9	35	96	0	125	38	49	0	11	1.40
42755234--42755363	3	43.3	3	70	11	52	30	9	2	57	1.42
42755234--42755275	19	2.3	18	87	4	57	26	2	2	69	1.13
42755260--42755341	33	2.3	39	83	12	104	34	13	0	52	1.41
42757205--42757716	126	4.0	126	85	3	637	27	19	21	31	1.98
42757459--42757716	140	1.8	140	88	0	399	26	19	22	31	1.98
42759316--42759389	14	5.3	14	76	0	67	21	0	29	48	1.50
42759315--42759390	21	3.6	21	78	0	80	23	0	28	47	1.52
42759394--42759444	21	2.5	21	83	3	59	11	0	35	52	1.38
42761052--42761115	31	2.1	31	93	0	110	23	23	15	37	1.93
42761309--42761420	23	4.7	23	90	6	163	30	21	23	25	1.99
42761476--42761536	20	3.0	20	92	0	104	34	18	11	36	1.86
42761579--42761625	24	1.9	25	86	4	69	25	14	25	34	1.94
42762172--42762209	20	1.9	20	88	0	58	23	5	2	68	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42763697--42763832	40	3.5	40	82	2	168	36	19	28	15	1.92
42763730--42763835	20	5.3	20	61	4	61	37	18	27	16	1.92
42765048--42765096	24	2.1	23	82	17	57	10	36	10	42	1.73
42766029--42766140	53	2.1	53	83	3	136	41	17	16	25	1.89
42773112--42773158	20	2.4	20	89	3	69	61	0	0	38	0.96
42773111--42773149	10	4.0	10	96	3	71	58	0	0	41	0.98
42773391--42773436	19	2.3	20	88	3	67	32	6	0	60	1.22
42778835--42778925	45	2.0	45	93	0	155	36	25	15	23	1.94
42783403--42783441	16	2.5	16	95	4	71	35	7	20	35	1.81
42788809--42788868	30	2.0	30	83	0	75	38	10	20	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311