genome.fa.s12.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  119  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39581461--39581700	92	2.6	93	93	1	410	25	27	12	34	1.92
39581461--39581732	139	2.0	135	85	7	361	27	26	11	34	1.91
39584004--39584029	13	2.0	13	100	0	52	61	7	0	30	1.24
39584785--39584888	51	2.0	51	94	0	181	20	28	25	25	1.99
39591552--39591730	96	1.9	96	89	2	279	43	17	12	26	1.84
39599900--39599948	26	1.9	25	87	4	71	44	10	14	30	1.78
39604167--39604342	48	3.7	48	86	4	230	25	28	18	27	1.98
39614377--39614654	50	5.5	50	78	3	245	33	25	15	25	1.95
39614426--39614607	101	1.8	101	86	0	265	30	24	18	26	1.98
39617290--39617320	16	1.9	16	93	0	53	32	25	0	41	1.56
39617560--39617758	108	1.8	110	88	4	305	22	25	18	34	1.96
39617512--39617766	55	4.8	51	77	11	223	20	24	18	36	1.95
39618914--39618951	19	2.0	19	100	0	76	21	36	21	21	1.95
39627582--39627689	42	2.6	41	77	11	112	29	24	16	29	1.97
39628022--39628081	30	2.0	30	90	0	93	31	23	1	43	1.64
39631823--39631943	49	2.5	47	81	9	138	25	26	19	28	1.98
39631865--39631995	49	2.7	49	83	7	167	24	29	19	26	1.99
39632058--39632181	46	2.7	46	83	8	155	24	26	18	30	1.98
39636587--39636689	37	2.8	37	84	0	134	29	26	16	28	1.97
39639485--39639546	32	1.9	32	87	6	90	29	33	14	22	1.94
39639517--39639700	48	3.9	48	91	0	298	26	30	18	24	1.98
39641009--39641068	27	2.2	27	93	0	102	38	11	10	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39642644--39642718	37	2.0	37	97	0	141	28	20	5	46	1.72
39647459--39647622	43	3.8	43	74	9	138	32	24	18	24	1.97
39651985--39652393	49	8.5	49	93	2	688	33	7	30	28	1.85
39652304--39652377	22	3.3	22	63	10	60	35	10	28	25	1.90
39655219--39655270	27	2.0	26	88	3	77	36	21	25	17	1.94
39655903--39656155	27	9.4	27	85	0	337	26	20	18	34	1.96
39656984--39657291	47	6.7	44	74	13	221	23	29	20	27	1.99
39656984--39657290	94	3.3	94	81	6	308	23	29	20	27	1.99
39658844--39659006	40	4.1	40	79	8	190	30	26	19	23	1.98
39658835--39659006	80	2.2	80	86	7	244	29	26	19	24	1.99
39668682--39668760	37	2.1	37	88	0	113	26	30	18	24	1.98
39668879--39669277	49	8.3	49	92	2	643	29	29	8	32	1.86
39668879--39669280	143	2.8	143	93	1	669	29	29	8	32	1.86
39674834--39675027	49	3.9	49	83	2	244	25	18	26	29	1.98
39674835--39675022	100	1.9	100	93	0	322	24	19	26	30	1.98
39687899--39687950	16	3.2	16	88	0	68	38	5	26	28	1.79
39687932--39688025	44	2.1	46	88	4	138	31	6	26	35	1.82
39688407--39688548	58	2.5	57	83	2	185	51	2	2	43	1.28
39688437--39688573	58	2.4	57	80	7	143	52	3	2	41	1.31
39691020--39691152	40	3.3	40	88	2	151	25	27	21	24	1.99
39691048--39691205	80	2.0	80	83	5	203	25	27	22	25	2.00
39691048--39691158	40	2.8	40	89	5	170	26	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39698942--39699114	40	4.3	39	87	4	195	27	27	19	24	1.99
39698942--39699114	80	2.2	80	86	2	231	27	27	19	24	1.99
39722765--39723595	414	2.0	414	94	0	1446	41	10	14	33	1.80
39725698--39725740	21	2.0	21	82	8	52	32	20	0	46	1.51
39728218--39728331	43	2.7	43	80	4	124	26	17	27	28	1.98
39728389--39728418	15	1.9	16	93	6	53	46	0	16	36	1.47
39732056--39732133	28	2.8	28	88	0	111	32	12	25	29	1.93
39732306--39732453	40	3.6	41	73	9	140	27	18	29	25	1.98
39735048--39735094	15	3.1	15	87	0	67	21	8	4	65	1.37
39740653--39740717	23	2.7	24	76	7	69	49	3	6	41	1.43
39741969--39741995	12	2.2	12	100	0	54	33	7	14	44	1.73
39752838--39753019	46	4.0	46	89	1	249	21	22	14	41	1.89
39760186--39760224	20	1.9	21	89	5	62	71	0	2	25	0.98
39760449--39760483	18	1.9	18	88	0	52	62	0	8	28	1.24
39760457--39760564	38	2.7	40	83	7	114	61	0	4	34	1.17
39760971--39761015	16	2.8	17	77	16	51	31	2	0	66	1.04
39761056--39761098	23	1.9	22	90	4	68	27	4	0	67	1.10
39761940--39762105	90	1.8	90	82	0	215	34	13	22	30	1.92
39766538--39766593	29	2.0	29	89	3	87	37	1	26	33	1.67
39771815--39771938	61	2.0	61	98	0	239	45	14	5	34	1.69
39773859--39773890	5	6.6	5	92	7	57	81	0	0	18	0.70
39773860--39773890	9	3.3	9	95	4	53	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39778285--39778316	5	6.6	5	92	7	57	81	0	0	18	0.70
39778286--39778316	9	3.3	9	95	4	53	80	0	0	19	0.71
39779474--39779509	18	1.9	19	88	5	56	2	0	25	72	0.98
39785127--39785174	25	1.9	25	82	0	60	33	22	16	27	1.96
39785218--39785275	20	2.9	20	97	0	107	34	12	20	32	1.90
39785222--39785275	11	5.3	11	70	17	53	35	12	20	31	1.90
39785328--39785447	23	5.1	23	89	4	186	28	20	20	30	1.97
39785327--39785454	24	5.4	24	89	4	197	28	19	21	29	1.98
39785327--39785447	47	2.6	47	91	0	206	28	19	20	30	1.97
39785662--39785725	31	2.1	31	87	0	92	37	12	23	26	1.90
39793403--39793522	23	5.1	23	94	4	213	28	20	20	30	1.98
39793402--39793543	24	6.0	24	92	5	227	27	21	21	29	1.98
39793402--39793522	47	2.6	47	98	0	233	28	20	20	29	1.98
39793737--39793800	31	2.1	31	87	0	92	37	12	23	26	1.90
39795700--39795751	26	2.0	26	100	0	104	42	0	15	42	1.47
39811894--39811941	15	3.1	16	73	8	55	58	4	2	35	1.29
39815069--39815117	24	2.0	24	88	0	71	40	16	2	40	1.60
39818810--39818957	42	3.5	42	73	7	129	31	19	20	28	1.97
39818807--39818965	87	1.9	84	85	6	221	30	19	21	28	1.98
39823409--39823552	55	2.6	55	78	0	162	28	29	26	15	1.96
39834800--39834854	23	2.4	23	93	0	92	40	21	20	18	1.92
39835718--39835765	19	2.5	18	80	10	51	22	41	22	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39837596--39837661	19	3.4	19	76	19	82	34	19	10	34	1.86
39837584--39837662	39	2.0	39	100	0	158	37	18	10	32	1.85
39837584--39837642	20	3.0	20	75	20	70	38	16	10	33	1.83
39840730--39840770	22	1.9	22	85	5	57	21	31	26	19	1.97
39842451--39842512	30	2.1	30	96	0	115	24	14	12	48	1.79
39850812--39850863	22	2.4	22	87	6	79	50	7	21	21	1.73
39851415--39851453	15	2.6	14	84	11	51	15	5	20	58	1.55
39854469--39854501	13	2.3	15	90	10	52	69	0	24	6	1.10
39856646--39856875	46	5.0	46	94	0	361	39	14	23	23	1.91
39856661--39856916	92	2.8	90	86	3	262	41	14	22	21	1.89
39860337--39860367	15	2.1	15	93	0	53	12	58	6	22	1.58
39863467--39864030	282	2.0	282	96	0	1047	32	12	24	29	1.93
39865920--39865979	30	2.0	30	83	0	75	36	8	25	30	1.85
39871308--39871351	20	2.2	20	95	0	79	15	31	29	22	1.95
39875775--39875955	45	4.0	45	82	0	245	24	22	24	28	1.99
39875777--39875952	90	2.0	90	89	0	271	23	22	25	28	1.99
39876523--39876555	16	1.9	18	88	11	52	24	15	12	48	1.78
39879875--39879935	29	2.1	30	87	3	88	31	24	6	37	1.81
39883998--39884042	20	2.2	20	88	0	63	48	4	13	33	1.62
39885042--39885127	43	2.0	43	100	0	172	32	9	20	37	1.85
39887301--39887340	18	2.2	18	86	0	53	57	2	5	35	1.34
39892690--39892804	29	4.0	29	80	6	119	29	28	13	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39899298--39899339	22	1.9	22	85	9	59	42	4	0	52	1.22
39916234--39916289	27	2.1	27	87	6	80	14	16	21	48	1.81
39916571--39916679	28	3.9	29	75	9	91	24	29	14	31	1.95
39918107--39918137	16	1.9	16	100	0	62	22	6	19	51	1.69
39923548--39923649	29	3.6	28	86	6	134	29	27	16	26	1.97
39923653--39923695	18	2.5	17	84	3	50	41	27	2	27	1.68
39928583--39928669	21	4.0	21	74	11	84	45	13	1	39	1.51
39928575--39928667	46	2.0	46	95	0	168	46	11	1	40	1.48
39932722--39932987	46	5.7	46	70	16	172	22	18	28	30	1.97
39932767--39932926	47	3.4	46	73	14	166	22	17	29	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311