genome.fa.s12.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  128  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43100701--43100888	61	3.1	61	68	14	190	49	6	2	41	1.41
43100669--43100891	120	1.9	120	97	0	419	49	6	2	42	1.40
43100806--43100840	18	2.0	17	88	5	52	60	0	0	40	0.97
43100881--43100927	17	2.9	16	78	18	53	46	2	6	44	1.40
43100900--43100933	17	2.0	17	94	0	59	50	0	5	44	1.26
43106140--43106171	16	2.0	17	88	11	50	31	0	12	56	1.37
43119543--43119683	27	5.2	27	77	11	155	36	22	22	18	1.95
43119543--43119686	54	2.7	54	90	2	218	36	22	22	18	1.95
43120073--43120102	8	3.8	8	90	0	51	3	26	26	43	1.70
43121281--43121336	26	2.2	26	96	0	103	35	25	7	32	1.83
43121291--43121343	26	2.2	23	83	12	63	33	22	3	39	1.72
43139221--43139410	40	4.8	40	88	1	238	25	22	27	24	1.99
43139221--43139429	80	2.6	80	84	4	271	25	21	27	25	1.99
43140956--43141173	104	2.1	106	80	5	237	29	24	15	30	1.96
43145357--43145415	29	2.0	29	100	0	118	35	6	27	30	1.83
43146837--43147178	47	7.3	47	91	0	540	33	8	29	28	1.87
43146837--43147174	94	3.6	94	95	0	595	33	8	29	28	1.87
43150999--43151174	46	3.8	46	79	12	216	20	21	29	28	1.98
43150996--43151167	93	1.8	93	96	0	317	20	21	29	27	1.98
43158564--43158738	45	3.8	46	79	13	216	20	20	29	29	1.98
43160527--43160590	30	2.2	29	88	8	94	31	23	26	18	1.98
43161310--43161434	40	3.0	42	80	11	143	28	25	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43161391--43161512	46	2.6	47	82	8	142	30	25	14	29	1.95
43161541--43161620	31	2.6	31	87	0	115	26	27	21	25	1.99
43161746--43161774	14	2.0	15	93	6	51	55	10	6	27	1.59
43165531--43165580	25	1.9	25	88	8	73	54	6	16	24	1.64
43166691--43166743	15	3.3	15	76	19	52	54	1	1	41	1.22
43174743--43174774	15	2.1	15	94	0	55	3	21	0	75	0.95
43175892--43175931	18	2.2	18	86	0	53	5	2	27	65	1.27
43183311--43183417	52	2.1	52	96	0	196	28	14	28	28	1.96
43192441--43192498	30	1.9	30	85	0	80	29	22	8	39	1.84
43198915--43198939	7	3.6	7	100	0	50	0	12	12	76	1.04
43201741--43201805	32	2.0	32	93	0	112	35	9	12	43	1.74
43206056--43206264	39	5.3	40	86	5	246	26	28	21	23	1.99
43206056--43206264	80	2.6	80	84	5	264	26	28	21	23	1.99
43213536--43213798	40	6.6	40	87	3	316	26	28	20	24	1.99
43230762--43230820	27	2.2	28	84	6	77	33	10	1	54	1.44
43236760--43236826	34	1.9	35	87	3	100	44	10	10	34	1.73
43240040--43240073	17	2.1	17	88	5	52	41	0	8	50	1.34
43241577--43241601	12	2.1	12	100	0	50	16	0	16	68	1.22
43244915--43244944	13	2.2	14	94	5	53	33	0	16	50	1.46
43249978--43250026	24	2.0	24	96	0	89	26	8	28	36	1.85
43266108--43266258	49	3.1	49	96	1	270	34	13	11	40	1.81
43269440--43269615	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43269437--43269608	93	1.8	93	96	0	317	20	21	29	27	1.98
43272918--43272950	2	16.5	2	100	0	66	48	0	51	0	1.00
43277029--43277058	14	2.1	14	93	0	51	30	0	13	56	1.37
43278148--43278174	5	5.4	5	100	0	54	0	18	62	18	1.32
43279967--43280137	66	2.6	66	84	5	195	28	14	28	29	1.95
43280477--43280529	21	2.5	21	90	3	88	39	16	20	22	1.92
43282275--43282336	31	2.0	31	81	9	74	61	0	17	20	1.35
43287797--43287962	46	3.6	45	75	8	154	29	18	27	24	1.98
43288026--43288152	49	2.6	48	80	5	148	27	21	27	23	1.99
43292006--43292087	32	2.6	32	80	7	87	23	21	23	31	1.98
43294311--43294378	31	2.2	31	78	5	75	41	10	13	35	1.78
43296491--43296540	24	2.1	24	85	7	66	32	0	2	66	1.03
43301019--43301251	40	5.8	40	91	3	337	23	21	28	26	1.99
43309107--43309350	40	6.1	40	91	0	366	23	22	27	25	2.00
43315484--43315541	30	2.0	29	86	3	80	34	10	27	27	1.89
43315880--43316062	46	3.9	46	75	11	176	27	19	30	22	1.98
43317776--43318026	55	4.7	53	80	6	208	22	24	17	36	1.95
43321054--43321103	25	2.0	25	100	0	100	40	8	16	36	1.77
43322278--43322326	15	3.3	15	80	5	64	40	0	8	51	1.32
43338309--43338583	48	5.7	48	89	0	381	27	31	17	24	1.97
43346115--43346152	14	2.9	13	81	11	51	57	10	13	18	1.63
43354398--43354435	14	2.9	13	81	11	51	57	10	13	18	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43354792--43354844	13	4.1	13	97	0	97	15	32	32	20	1.93
43355200--43355241	22	1.9	22	85	0	57	28	0	26	45	1.54
43368776--43368912	57	2.4	58	87	1	195	29	18	17	34	1.94
43374437--43374474	19	2.0	20	84	5	51	21	15	2	60	1.47
43379835--43379922	6	14.3	6	72	13	72	47	14	18	19	1.82
43379843--43379922	31	2.6	31	87	0	106	47	15	18	18	1.83
43380323--43380600	27	10.3	27	88	1	299	25	17	20	37	1.94
43380501--43380629	27	4.8	27	87	2	161	27	6	23	42	1.79
43380394--43380629	54	4.4	54	79	8	158	25	13	22	38	1.91
43380531--43380643	27	4.2	27	89	0	109	29	5	24	40	1.77
43380593--43380712	54	2.2	54	84	0	150	36	6	22	34	1.80
43380622--43380710	27	3.3	27	93	0	151	38	6	22	32	1.80
43380715--43380801	27	3.2	27	82	6	113	27	9	22	40	1.85
43393664--43393766	43	2.4	42	83	1	125	33	24	16	25	1.96
43394232--43394265	8	4.1	8	96	3	59	61	23	0	14	1.33
43399752--43399817	32	2.1	32	100	0	132	22	15	10	51	1.73
43399829--43399884	21	2.6	22	82	5	69	16	30	28	25	1.96
43406033--43406063	15	2.1	15	93	0	53	19	0	25	54	1.44
43406984--43407027	19	2.3	19	88	7	63	47	4	15	31	1.66
43419703--43419909	53	3.8	53	71	6	157	20	24	16	38	1.93
43421834--43421894	28	2.2	28	96	0	113	27	21	29	21	1.98
43430825--43430866	11	4.1	11	76	17	54	30	2	16	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43430836--43430876	19	2.2	19	100	0	82	26	4	14	53	1.61
43434808--43434844	18	2.1	18	90	10	58	54	10	24	10	1.67
43436934--43437140	67	3.2	65	76	13	167	22	29	16	31	1.96
43449657--43449758	6	16.7	6	77	11	91	50	15	14	18	1.77
43449657--43449762	31	3.5	31	79	3	99	51	15	14	18	1.76
43450163--43450358	27	7.3	27	87	0	257	26	21	18	34	1.96
43450340--43450446	27	4.0	27	85	0	115	30	7	21	40	1.81
43450434--43450522	27	3.3	27	88	0	133	37	8	22	31	1.85
43450532--43450610	27	3.0	27	81	7	99	29	7	25	37	1.83
43464104--43464137	8	4.1	8	96	3	59	61	23	0	14	1.33
43466994--43467058	28	2.3	28	91	0	103	32	27	9	30	1.88
43467164--43467253	27	3.2	27	78	7	92	21	23	23	32	1.98
43467174--43467264	27	3.2	28	78	7	69	23	25	19	31	1.98
43467718--43467756	19	2.1	19	85	0	51	15	5	7	71	1.26
43473483--43473513	15	2.1	15	93	0	53	19	0	25	54	1.44
43474123--43474233	56	2.0	55	84	7	143	28	12	23	35	1.91
43474435--43474478	19	2.3	18	84	7	52	47	2	15	34	1.58
43488397--43488457	28	2.2	28	96	0	113	27	22	27	21	1.99
43497449--43497490	11	4.1	11	76	17	54	30	2	16	50	1.58
43497460--43497500	19	2.2	19	100	0	82	26	4	14	53	1.61
43510831--43510887	23	2.5	22	81	13	71	21	7	0	71	1.08
43511259--43511295	13	2.9	13	88	4	58	21	2	0	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43514096--43514216	39	3.1	39	92	0	197	12	25	22	39	1.89
43516569--43516625	27	2.1	27	83	6	71	33	15	29	21	1.94
43516578--43516635	27	2.1	27	83	0	71	32	17	31	18	1.94
43517114--43517577	239	1.9	239	98	0	903	42	24	6	27	1.78
43521636--43521788	75	2.0	75	93	0	261	26	7	15	49	1.72
43521711--43521890	90	2.0	90	87	0	261	25	7	13	52	1.67
43524511--43524569	17	3.5	17	74	4	57	35	13	0	50	1.42
43524561--43524599	16	2.5	15	84	12	51	25	10	0	64	1.25
43524611--43524657	17	2.7	18	86	3	69	17	10	4	68	1.35
43524708--43524775	5	12.2	5	77	20	55	27	17	1	52	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311