genome.fa.s12.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  161  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54926927--54926974	25	1.9	25	86	0	69	25	16	25	33	1.96
54927914--54929445	764	2.0	765	97	0	2895	34	24	15	25	1.94
54930993--54931109	31	3.8	31	90	1	173	24	27	16	31	1.96
54931328--54931397	25	2.8	25	91	0	104	24	24	25	25	2.00
54931604--54931729	27	4.7	27	81	4	148	25	22	19	32	1.97
54931599--54931729	54	2.4	54	86	5	167	25	21	20	32	1.97
54934563--54934629	27	2.5	27	100	0	134	22	19	23	34	1.97
54934619--54934719	27	3.8	27	84	6	107	28	8	21	40	1.83
54934675--54934760	27	3.2	27	86	0	100	27	8	25	38	1.84
54934739--54935030	27	10.8	27	87	0	368	39	7	22	30	1.82
54939125--54939242	50	2.4	50	94	2	202	27	23	18	29	1.98
54939960--54940026	32	2.1	32	85	0	89	28	13	28	29	1.94
54940878--54940911	16	2.1	16	88	0	50	41	8	20	29	1.82
54944715--54944812	32	3.1	32	84	0	124	25	16	28	29	1.97
54945684--54945815	49	2.7	49	83	3	160	22	28	21	28	1.99
54946518--54946568	20	2.7	18	82	14	59	37	21	0	41	1.54
54951073--54951331	46	5.5	46	78	9	204	27	20	27	24	1.99
54955650--54955747	38	2.6	38	91	0	160	24	20	23	31	1.98
54955654--54955772	38	3.1	38	87	0	157	23	19	23	33	1.97
54969597--54969656	30	2.0	30	93	0	102	38	6	25	30	1.81
54970079--54970248	46	3.7	46	74	14	161	22	21	27	28	1.99
54970076--54970246	93	1.8	93	88	2	263	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54977649--54977821	46	3.7	46	80	13	219	21	21	28	28	1.98
54977646--54977816	93	1.8	93	96	0	315	21	21	29	28	1.98
54979518--54979707	41	4.7	41	84	1	231	25	15	26	32	1.95
54979515--54979707	81	2.4	82	84	1	237	25	15	25	32	1.95
54989297--54989323	13	2.1	13	100	0	54	22	33	29	14	1.94
54992440--54992479	21	2.0	21	90	5	64	10	37	30	22	1.87
54994242--54994273	16	2.0	16	100	0	64	6	25	18	50	1.70
54995427--54995469	20	2.1	21	83	12	54	32	6	13	46	1.71
54995511--54995551	20	2.1	19	86	4	55	51	0	43	4	1.23
54996937--54996994	22	2.6	22	71	10	64	17	24	5	53	1.64
54996993--54997055	30	2.1	30	93	0	108	25	3	14	57	1.52
54997132--54997178	19	2.5	19	76	13	51	25	2	10	61	1.39
54997178--54997211	11	3.1	11	91	8	52	67	0	0	32	0.91
55008175--55008281	43	2.5	42	79	7	126	30	18	23	27	1.98
55008175--55008304	42	3.1	42	76	6	136	28	16	26	27	1.97
55025090--55025347	48	5.5	47	78	12	160	30	17	28	24	1.97
55025175--55025306	48	2.7	50	87	6	173	27	15	31	25	1.96
55025087--55025354	46	5.7	48	76	12	202	29	17	28	24	1.98
55033012--55033257	45	5.6	45	74	9	186	29	26	18	26	1.98
55036760--55036943	40	4.6	41	82	9	204	24	22	27	25	2.00
55036813--55036943	39	3.3	38	86	6	181	24	22	28	25	1.99
55036813--55036966	79	2.0	78	84	6	204	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55053986--55054048	31	2.0	31	93	0	108	14	33	12	39	1.84
55088090--55088150	31	2.0	31	93	0	104	24	24	16	34	1.95
55088372--55088442	26	2.8	26	87	4	101	29	21	23	25	1.99
55088359--55088442	26	3.4	25	85	6	100	28	21	21	28	1.99
55095311--55095481	39	4.3	39	92	2	254	24	22	28	25	2.00
55095258--55095481	40	5.7	40	86	7	264	25	22	27	25	2.00
55095258--55095481	79	2.8	79	84	9	260	25	22	27	25	2.00
55095311--55095506	79	2.5	79	84	5	220	26	21	27	25	1.99
55098958--55099138	40	4.6	40	86	2	206	22	22	25	29	1.99
55126166--55126228	31	2.1	31	90	3	101	23	23	15	36	1.94
55126417--55126576	23	7.0	24	84	14	214	29	21	20	29	1.98
55126438--55126575	44	3.1	45	90	8	219	30	20	19	29	1.97
55126631--55126687	9	5.9	9	73	15	51	35	21	8	35	1.84
55126623--55126689	20	3.3	20	95	0	125	32	19	11	35	1.88
55126623--55126678	11	5.5	11	71	16	57	32	19	12	35	1.89
55126726--55126773	25	1.9	25	86	0	69	25	16	25	33	1.96
55134164--55134227	31	2.1	31	87	0	92	26	23	14	35	1.93
55134441--55134560	23	5.1	23	92	4	204	30	20	20	29	1.98
55134440--55134560	47	2.6	47	94	0	215	29	20	19	29	1.97
55134440--55134561	24	5.2	24	91	4	203	29	20	19	30	1.97
55134619--55134675	9	5.9	9	73	15	51	35	21	8	35	1.84
55134615--55134677	20	3.2	20	95	0	117	31	19	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55134713--55134761	25	2.0	25	87	0	71	26	16	24	32	1.96
55138984--55139076	45	2.1	45	95	4	170	25	2	25	46	1.64
55148723--55148860	41	3.3	41	87	7	190	20	19	23	36	1.95
55155946--55156145	38	5.0	38	79	12	213	32	25	13	29	1.93
55155991--55156197	85	2.4	85	93	0	351	32	24	14	28	1.94
55156029--55156240	47	4.7	47	77	10	235	32	23	15	29	1.95
55156114--55156247	48	2.8	48	86	1	171	31	22	16	29	1.96
55156029--55156273	133	1.8	132	88	0	373	32	23	15	28	1.95
55161326--55161421	23	4.2	24	78	12	103	35	20	21	21	1.96
55173812--55173856	15	2.9	16	87	12	76	13	15	13	57	1.65
55173812--55173864	15	3.5	15	82	10	72	13	13	15	58	1.64
55186042--55186216	49	3.6	50	80	12	195	26	18	29	24	1.98
55185861--55186216	46	7.6	49	75	15	213	26	19	29	24	1.98
55185952--55186216	96	2.8	93	78	10	281	27	18	29	24	1.98
55193596--55193867	47	5.7	47	75	12	227	28	20	29	22	1.98
55193597--55193867	96	2.9	94	76	11	293	28	20	28	22	1.98
55199321--55199422	23	4.4	23	74	16	95	33	18	25	22	1.97
55199329--55199441	45	2.5	45	88	2	156	34	20	23	22	1.97
55199322--55199441	22	5.2	23	79	12	106	34	20	24	21	1.97
55203060--55203108	23	2.2	22	88	3	71	57	20	0	22	1.41
55203743--55203907	43	3.8	43	76	6	147	34	24	18	22	1.96
55206320--55206397	24	3.0	24	74	17	77	37	17	24	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55206318--55206407	28	3.4	28	78	10	107	34	16	25	23	1.95
55206432--55206582	49	3.0	49	80	5	169	29	14	29	27	1.95
55206445--55206586	52	2.8	51	86	3	180	27	14	30	27	1.95
55206440--55206629	51	3.8	50	76	10	163	26	15	30	27	1.96
55214217--55214257	18	2.2	19	83	12	50	21	26	39	12	1.89
55216045--55216128	30	2.9	29	85	3	123	26	14	29	29	1.95
55216041--55216129	29	3.1	29	82	7	110	26	13	28	31	1.94
55220300--55220334	13	2.7	13	100	0	70	5	22	17	54	1.64
55222879--55223018	72	2.0	71	88	1	208	35	12	21	31	1.90
55225061--55225101	19	2.2	18	87	12	57	65	2	0	31	1.05
55226961--55227212	68	3.8	64	76	9	199	30	16	28	24	1.97
55231486--55231607	46	2.6	47	84	5	147	26	22	14	36	1.93
55235815--55235930	46	2.4	46	82	5	133	28	22	13	35	1.92
55237539--55237570	16	2.0	16	93	0	55	40	18	21	18	1.91
55237797--55237860	26	2.4	26	86	5	83	34	25	10	29	1.90
55237965--55238070	27	3.9	26	78	8	113	18	25	20	34	1.96
55245614--55245677	26	2.4	26	84	5	83	35	21	10	31	1.88
55245782--55245893	27	4.2	26	78	7	116	16	23	23	37	1.93
55246853--55246980	45	2.8	45	82	4	159	23	23	11	41	1.87
55251045--55251130	29	3.0	29	79	8	86	24	29	11	34	1.91
55251178--55251233	29	1.9	29	96	0	103	16	26	14	42	1.86
55252715--55252752	20	1.9	20	88	0	58	13	34	15	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55254089--55254160	31	2.3	31	97	0	135	13	33	36	16	1.89
55254108--55254160	18	3.2	18	65	25	53	13	35	33	16	1.88
55254108--55254175	31	2.2	31	81	5	75	13	38	29	19	1.89
55261062--55261155	34	2.8	33	75	9	91	29	22	22	25	1.99
55263622--55263802	61	2.9	62	79	8	195	23	29	17	30	1.97
55269621--55269712	34	2.7	34	77	12	100	30	23	22	22	1.99
55272293--55272446	43	3.6	43	74	7	152	33	25	14	25	1.95
55278048--55278219	46	3.7	46	74	10	179	22	19	27	29	1.98
55278041--55278212	93	1.8	93	93	0	299	23	20	27	28	1.99
55284230--55284357	28	4.5	28	88	2	175	28	12	25	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311