genome.fa.s12.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  121  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40334334--40334364	14	2.1	15	94	5	55	6	3	35	54	1.42
40337662--40337773	36	3.1	36	77	2	118	39	28	12	19	1.88
40345781--40345910	47	2.8	46	85	4	179	33	30	16	20	1.94
40348239--40348454	40	5.4	40	92	2	323	25	27	22	24	2.00
40361153--40361220	33	2.1	33	100	0	136	23	8	30	36	1.85
40371285--40371353	36	1.9	36	93	0	120	30	18	17	33	1.94
40374856--40374914	30	2.0	30	100	0	118	23	18	20	37	1.94
40379235--40379335	43	2.3	43	87	0	148	35	22	14	26	1.93
40382353--40382389	19	2.0	20	89	10	60	45	0	5	48	1.25
40382354--40382394	18	2.2	19	83	12	50	46	0	4	48	1.23
40382859--40383434	288	2.0	288	98	0	1125	43	10	13	33	1.77
40383789--40383820	16	2.0	16	100	0	64	18	18	6	56	1.62
40396082--40396536	47	9.6	47	91	2	696	28	29	8	32	1.87
40396082--40396536	96	4.8	95	91	3	695	28	29	8	32	1.87
40396082--40396536	143	3.2	143	92	2	731	28	29	8	32	1.87
40401743--40401822	38	2.1	38	88	0	115	20	21	28	30	1.98
40401794--40402011	43	5.1	43	89	1	307	12	22	33	31	1.91
40403326--40403502	40	4.5	40	84	2	207	25	27	24	22	2.00
40403366--40403535	40	4.2	40	88	1	200	25	26	22	24	2.00
40405463--40405542	38	2.1	38	90	0	124	20	22	28	28	1.98
40405514--40405745	43	5.4	43	90	3	353	13	23	34	29	1.93
40409570--40409608	14	2.7	14	85	14	53	82	0	15	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40410220--40410262	22	2.0	22	95	0	77	27	13	27	30	1.95
40416865--40417202	48	7.0	48	94	0	559	31	26	6	35	1.82
40421290--40421706	131	3.2	131	90	1	649	37	12	18	31	1.88
40422276--40422318	19	2.3	19	100	0	86	16	9	16	58	1.63
40424326--40424456	54	2.4	54	89	0	190	28	25	19	25	1.99
40427799--40427996	43	4.6	43	94	0	360	29	33	25	10	1.90
40427989--40428092	38	2.7	38	93	0	181	30	27	21	20	1.98
40430501--40430552	25	2.1	25	100	0	104	34	19	7	38	1.80
40431479--40431616	40	3.3	41	76	13	115	33	27	15	23	1.95
40441001--40441041	13	3.2	13	80	13	57	53	4	2	39	1.35
40444997--40445108	25	4.5	25	80	2	127	29	19	23	27	1.98
40448024--40448077	12	4.4	12	80	13	65	55	12	14	16	1.69
40448195--40448254	27	2.3	26	82	2	66	36	18	23	21	1.95
40448581--40449071	27	18.2	27	84	1	536	42	7	19	30	1.79
40449066--40449194	27	4.8	26	77	7	107	30	10	21	37	1.86
40449039--40449149	54	2.1	54	80	10	120	33	9	21	36	1.85
40449064--40449194	54	2.4	54	82	5	165	29	10	22	37	1.88
40449065--40449217	27	5.7	26	73	9	103	28	9	22	38	1.86
40450785--40450838	8	6.8	8	75	8	56	48	20	22	9	1.78
40450785--40450851	24	2.8	24	81	0	80	47	17	23	10	1.79
40450785--40450851	16	4.2	16	70	14	57	47	17	23	10	1.79
40451076--40451182	29	3.7	29	85	8	130	28	14	30	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40455966--40456059	24	3.9	24	90	0	134	36	30	12	20	1.90
40455923--40456056	48	2.8	48	81	0	133	35	27	12	23	1.91
40455926--40456059	72	1.9	72	83	0	178	36	27	11	23	1.90
40457304--40457339	15	2.5	14	86	8	54	22	11	0	66	1.22
40458767--40458873	29	3.7	29	85	6	139	26	13	32	28	1.93
40459130--40459184	27	2.1	26	82	3	65	41	21	20	16	1.90
40465322--40465410	25	3.6	25	79	11	103	30	22	21	25	1.99
40474302--40474387	40	2.2	39	80	2	100	25	16	27	30	1.97
40477193--40477366	50	3.6	50	80	6	180	26	15	32	25	1.96
40486783--40486910	48	2.7	48	91	2	195	26	19	28	25	1.99
40488525--40488595	24	3.0	24	93	0	115	35	1	36	26	1.66
40490012--40490116	27	3.9	26	82	7	120	18	23	20	37	1.94
40490012--40490121	54	2.0	54	84	3	141	17	23	20	39	1.92
40497719--40497815	30	3.2	30	71	8	90	27	15	28	27	1.96
40502437--40502533	30	3.2	30	71	8	90	27	15	28	27	1.96
40502813--40502871	24	2.5	24	100	0	118	33	0	37	28	1.58
40504301--40504412	27	4.2	26	80	7	125	16	22	23	37	1.94
40504301--40504412	54	2.1	54	89	3	172	16	22	23	37	1.94
40504310--40504434	54	2.3	55	82	5	130	20	23	20	36	1.95
40507453--40507668	119	1.8	120	82	7	278	26	27	20	25	1.99
40507451--40507673	79	2.8	79	81	5	225	26	28	20	24	1.99
40507451--40507675	40	5.7	40	83	6	260	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40510401--40510451	26	2.0	26	96	0	93	11	23	35	29	1.90
40510504--40510554	26	2.0	26	96	0	93	11	23	35	29	1.90
40510322--40510688	103	3.6	103	95	1	623	19	20	30	30	1.97
40510605--40510656	26	2.0	26	96	0	95	13	23	34	28	1.92
40518836--40518964	46	2.8	46	91	4	199	29	28	21	20	1.98
40523137--40523162	12	2.2	12	100	0	52	15	23	0	61	1.33
40530635--40530807	46	3.8	46	75	18	173	20	19	29	30	1.97
40530632--40530800	90	1.9	90	88	6	261	21	20	29	28	1.98
40533371--40533403	17	2.0	17	88	5	50	18	24	0	57	1.40
40533571--40533678	44	2.4	44	87	3	144	29	23	13	33	1.93
40535667--40535710	21	2.1	21	100	0	88	25	13	22	38	1.91
40535908--40536019	48	2.3	48	80	6	129	33	13	22	30	1.92
40543038--40543402	104	3.6	104	93	4	609	18	20	30	30	1.96
40547568--40548073	48	10.6	48	87	0	618	26	17	29	26	1.97
40553894--40553938	17	2.6	17	96	0	81	35	6	11	46	1.66
40558301--40558479	43	4.0	44	76	12	168	31	15	22	30	1.95
40558301--40558452	43	3.4	43	83	9	173	30	15	24	30	1.95
40559702--40559736	16	2.1	16	89	5	52	22	8	20	48	1.76
40560534--40560668	43	3.1	43	88	1	180	32	18	22	26	1.97
40562553--40562718	48	3.5	47	78	4	172	27	19	29	22	1.98
40565946--40566011	33	2.0	33	100	0	132	42	27	0	30	1.56
40570293--40570338	23	2.0	23	86	4	65	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40578665--40578743	31	2.5	31	89	0	122	26	24	17	31	1.97
40578767--40578858	42	2.2	42	92	0	148	34	21	14	29	1.93
40579003--40579100	26	3.8	26	89	4	146	27	22	21	28	1.99
40579908--40579986	27	2.9	27	92	3	124	20	25	22	31	1.98
40579908--40579996	27	3.3	26	87	7	117	20	24	20	34	1.96
40580047--40580303	27	9.5	27	77	5	133	33	9	19	37	1.84
40580025--40580303	54	5.1	54	75	5	195	33	9	20	37	1.84
40580025--40580250	54	4.2	54	78	3	202	31	9	20	38	1.85
40580025--40580250	82	2.8	81	79	6	231	31	9	20	38	1.85
40580055--40580261	81	2.5	81	80	5	204	31	8	19	40	1.82
40580256--40580519	27	9.8	27	85	4	273	40	6	23	29	1.80
40580498--40580614	27	4.3	26	80	6	101	31	10	17	40	1.84
40580256--40580519	81	3.3	81	79	6	309	40	6	23	29	1.80
40580498--40580614	54	2.2	53	81	9	130	31	10	17	40	1.84
40583858--40583989	44	3.0	42	78	9	133	20	15	26	37	1.93
40591490--40591601	27	4.1	27	86	3	145	23	14	21	41	1.89
40595088--40595406	27	11.9	27	77	7	301	26	15	16	41	1.88
40595097--40595411	81	3.9	81	83	4	406	26	14	16	41	1.88
40597806--40597895	27	3.2	27	85	7	119	18	24	24	32	1.97
40597806--40597920	55	2.1	56	82	11	139	18	24	22	34	1.96
40598358--40598396	19	2.1	19	85	0	51	15	5	7	71	1.26
40604340--40604372	12	2.6	13	85	9	50	9	45	0	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40605467--40605556	28	3.2	27	85	7	119	20	24	23	32	1.98
40606019--40606057	19	2.1	19	85	0	51	15	5	7	71	1.26
40608454--40608536	43	2.0	43	88	7	125	24	14	25	36	1.93
40608458--40608547	43	2.1	42	82	10	103	25	15	26	32	1.96
40611446--40611470	12	2.1	12	100	0	50	36	0	16	48	1.46
40615993--40616198	40	5.2	40	92	1	326	27	28	21	22	1.99
40618024--40618069	23	2.0	23	83	4	58	28	17	28	26	1.98
40620486--40620630	40	3.6	40	98	0	272	23	27	24	24	2.00
40624467--40624678	40	5.3	40	93	1	300	27	26	20	25	1.99
40624467--40624732	80	3.3	80	84	3	313	27	26	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311