genome.fa.s12.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  166  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56684754--56684977	40	5.7	40	82	7	233	25	28	20	25	1.99
56684754--56684978	79	2.8	78	80	6	247	25	28	20	25	1.99
56684909--56684986	40	1.9	41	82	10	97	26	28	20	24	1.99
56690079--56690252	39	4.4	39	82	6	210	26	27	21	24	1.99
56698098--56698273	40	4.4	40	82	4	205	27	27	21	23	1.99
56702546--56702588	18	2.4	17	82	17	52	30	4	0	65	1.13
56706083--56706299	40	5.5	40	88	2	278	23	23	28	25	1.99
56719962--56720058	34	2.9	34	89	6	135	26	22	24	25	2.00
56722515--56722667	27	5.7	27	86	0	207	30	20	7	41	1.80
56722515--56722667	81	1.9	81	88	0	234	30	20	7	41	1.80
56722520--56722668	54	2.8	54	91	0	244	30	19	7	42	1.79
56722521--56722804	81	3.5	81	78	3	223	35	20	7	36	1.81
56722675--56722842	54	3.1	54	78	4	180	39	20	9	29	1.84
56722471--56722812	27	12.7	27	77	5	163	36	21	7	34	1.81
56722804--56723044	27	8.9	27	83	3	288	36	18	20	24	1.94
56722800--56723028	54	4.2	54	89	3	327	36	20	19	24	1.95
56722800--56723044	81	3.0	81	85	2	339	36	18	20	24	1.95
56726526--56726781	40	6.4	40	92	2	385	23	21	27	26	1.99
56731109--56731172	33	2.0	32	84	9	85	35	17	23	23	1.95
56735326--56735547	40	5.6	40	93	1	358	22	26	23	27	2.00
56741752--56741949	43	4.6	43	85	0	225	24	15	29	31	1.95
56747459--56747597	47	3.0	46	74	15	115	28	30	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56748031--56748090	30	2.0	30	86	0	84	30	25	10	35	1.88
56751141--56751211	25	2.8	25	91	2	106	26	19	26	26	1.99
56758957--56759009	25	2.2	25	83	10	65	26	18	16	37	1.93
56765051--56765096	17	2.7	17	96	0	83	34	15	13	36	1.86
56768261--56768360	33	3.2	33	63	23	88	30	23	5	42	1.75
56768264--56768389	61	2.1	61	100	0	252	33	23	4	38	1.76
56768511--56768665	43	3.6	43	77	11	120	32	26	16	25	1.96
56798787--56798943	86	1.8	85	82	9	203	27	18	23	30	1.98
56798834--56798943	42	2.6	43	81	4	125	27	19	23	30	1.98
56798779--56798951	43	4.0	43	72	11	156	26	17	24	31	1.97
56806337--56806411	29	2.6	29	89	0	105	25	28	18	28	1.98
56806636--56806703	24	2.9	24	86	2	93	8	22	20	48	1.77
56806636--56806702	8	8.4	8	80	6	73	8	22	19	49	1.76
56807911--56807944	16	2.1	16	94	0	59	17	8	29	44	1.79
56818120--56818237	57	2.1	56	82	4	139	33	26	11	28	1.90
56818120--56818237	29	4.2	29	82	3	134	33	26	11	28	1.90
56818449--56818491	8	5.4	8	82	0	50	9	23	16	51	1.73
56831313--56831337	11	2.3	11	100	0	50	8	24	20	48	1.76
56832853--56833005	76	2.0	76	96	0	279	34	18	9	37	1.82
56842627--56842690	33	1.9	33	93	0	110	29	7	14	48	1.71
56844369--56844586	117	1.9	116	88	0	328	34	12	23	28	1.92
56849349--56849388	20	2.0	20	100	0	80	40	5	15	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56853703--56853743	21	2.0	21	90	0	64	29	21	29	19	1.98
56870810--56870996	67	2.8	67	85	1	232	35	16	22	25	1.94
56883136--56883166	11	2.8	11	95	0	53	41	19	16	22	1.89
56885898--56885991	32	2.8	32	75	13	84	27	25	20	26	1.99
56886311--56886362	25	2.1	25	81	0	59	30	17	21	30	1.96
56893734--56893813	32	2.4	35	75	12	87	28	21	20	30	1.98
56902053--56902095	21	2.0	21	90	0	68	32	23	4	39	1.75
56903099--56903131	10	3.2	11	87	12	52	87	0	12	0	0.53
56903099--56903131	16	2.1	16	94	5	59	87	0	12	0	0.53
56904168--56904214	23	2.0	23	100	0	94	38	17	23	21	1.93
56915496--56915566	15	4.7	15	82	6	72	11	14	16	57	1.64
56917764--56917803	14	2.6	16	80	11	57	47	0	22	30	1.52
56923701--56923785	45	1.9	44	87	2	125	24	14	23	37	1.92
56924019--56924061	21	2.0	21	100	0	86	46	9	13	30	1.75
56934055--56934090	15	2.4	15	95	0	63	30	25	8	36	1.85
56934715--56934754	17	2.4	17	95	0	71	60	12	5	22	1.52
56946596--56946686	22	4.1	22	79	0	92	30	25	27	16	1.97
56946647--56946694	22	2.2	22	88	0	69	31	22	29	16	1.96
56946611--56946704	44	2.1	44	82	0	107	31	23	28	15	1.96
56954297--56954327	14	2.2	14	100	0	62	29	22	6	41	1.78
56956837--56957027	40	4.8	40	89	2	260	23	24	29	23	1.99
56965403--56965462	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56971525--56971710	46	4.0	45	73	17	141	27	29	20	22	1.99
56974070--56974158	30	3.0	30	80	8	101	57	15	16	10	1.65
56974070--56974149	15	5.4	15	80	7	92	58	13	17	10	1.62
56974081--56974158	15	5.2	15	78	9	79	56	15	16	11	1.67
56977070--56977197	45	2.8	46	87	2	186	29	28	21	20	1.98
56986788--56986969	55	3.4	54	77	2	186	19	23	18	38	1.93
56991790--56991856	34	2.0	34	84	0	89	29	22	25	22	1.99
56998174--56998211	19	2.0	19	94	0	67	28	0	21	50	1.49
57000015--57000064	25	2.0	25	100	0	100	16	12	16	56	1.68
57007175--57007204	7	4.1	7	95	4	51	30	0	53	16	1.44
57010755--57010945	40	4.8	40	90	0	276	20	23	30	25	1.99
57024374--57024549	68	2.6	68	76	13	150	21	28	17	33	1.95
57030063--57030219	68	2.4	64	82	7	181	26	28	15	28	1.96
57037705--57037831	44	2.9	43	87	5	159	23	14	27	33	1.94
57037705--57037831	42	2.9	43	85	8	143	23	14	27	33	1.94
57044471--57044611	46	3.0	44	74	14	117	29	28	19	22	1.98
57047606--57047711	44	2.5	42	84	9	126	28	19	22	29	1.98
57047602--57047752	43	3.5	43	78	8	137	28	19	23	28	1.98
57050702--57050737	16	2.2	17	90	5	56	11	5	30	52	1.59
57053357--57053408	27	2.0	25	85	7	68	19	19	21	40	1.92
57053692--57053777	28	3.0	28	84	3	109	27	27	15	29	1.96
57056964--57057220	40	6.5	40	85	2	324	23	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57065068--57065305	40	6.1	40	85	6	310	22	22	28	26	1.99
57065068--57065305	78	3.0	78	84	6	295	22	22	28	26	1.99
57066743--57066781	16	2.4	17	87	12	55	12	5	33	48	1.63
57069733--57069847	29	4.0	29	86	6	155	29	27	14	27	1.95
57069727--57069841	57	2.0	57	86	3	160	28	27	15	27	1.96
57070703--57070760	28	2.0	29	90	3	91	31	29	12	27	1.92
57072185--57072285	37	2.7	37	92	0	157	25	30	19	23	1.98
57072456--57072782	47	7.0	47	90	0	501	25	29	11	32	1.92
57076559--57076868	40	7.8	40	92	0	512	25	26	20	26	1.99
57078134--57078234	37	2.7	37	90	0	148	26	29	18	24	1.98
57078405--57078681	47	5.9	47	91	0	419	26	28	12	31	1.93
57078441--57078516	23	3.2	25	63	24	63	22	34	14	28	1.93
57078537--57078613	22	3.4	22	64	22	59	28	28	14	28	1.95
57087672--57087801	24	5.4	23	89	7	179	18	38	5	37	1.74
57087679--57087800	48	2.5	48	91	1	199	19	38	4	36	1.74
57094328--57094380	26	2.0	26	82	7	63	22	18	20	37	1.94
57095474--57095532	28	2.0	29	83	6	75	62	0	27	10	1.27
57103029--57103192	40	4.2	39	82	9	174	26	27	20	25	1.99
57103052--57103195	40	3.6	40	85	8	195	25	28	22	23	1.99
57106912--57107007	47	2.0	47	100	0	192	25	22	21	30	1.99
57111088--57111254	40	4.2	40	83	8	182	25	27	22	25	2.00
57111111--57111258	40	3.7	40	82	8	194	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57119107--57119327	40	5.6	40	84	8	274	23	27	23	25	2.00
57126011--57126176	46	3.6	46	75	5	165	23	28	18	30	1.97
57132506--57132550	22	2.0	22	100	0	90	17	13	8	60	1.58
57138184--57138227	22	2.0	23	86	4	63	47	25	18	9	1.77
57139946--57140321	27	13.9	27	90	0	446	31	22	5	40	1.77
57139949--57140500	27	20.4	27	84	5	184	34	21	6	37	1.79
57139949--57140385	54	8.1	54	84	3	279	33	22	5	37	1.77
57140300--57140507	54	3.8	53	80	7	213	40	20	7	31	1.80
57140300--57140522	81	2.8	82	82	7	242	39	21	7	30	1.81
57140342--57140519	27	6.7	26	79	9	121	41	20	8	29	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311