Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  235  of  311  ( 37258 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79303768--79303852
41
2.1
40
84
6
109
52
31
0
15
1.43
79303838--79303878
21
2.0
21
90
9
66
41
34
4
19
1.73
79303946--79304016
26
2.7
26
72
12
63
49
25
1
23
1.59
79303959--79304002
20
2.2
20
83
0
52
47
25
2
25
1.63
79304061--79304175
7
16.9
7
68
12
53
47
30
1
20
1.60
79304061--79304112
14
3.7
14
77
10
61
51
25
1
21
1.57
79304634--79304717
34
2.5
34
86
3
125
47
32
1
19
1.57
79304728--79304780
16
3.4
15
79
7
61
35
11
22
30
1.89
79305577--79305628
23
2.3
23
82
0
68
50
23
7
19
1.73
79306355--79306434
34
2.4
34
87
2
108
33
5
11
50
1.60
79306924--79307094
72
2.3
73
80
8
188
39
0
20
39
1.57
79309991--79310034
16
2.8
16
80
16
56
36
0
18
45
1.49
79313071--79313180
56
2.0
56
85
0
148
23
28
17
30
1.97
79314009--79314034
5
5.2
5
100
0
52
19
0
0
80
0.71
79317170--79317288
43
2.8
43
71
14
118
31
23
15
30
1.95
79317247--79317374
50
2.6
49
81
9
138
25
25
18
30
1.98
79317283--79317423
50
2.8
49
82
3
156
20
29
18
31
1.96
79322996--79323081
29
3.0
29
84
3
93
27
16
29
26
1.97
79324162--79324196
18
2.0
18
88
5
54
37
20
14
28
1.91
79334913--79335065
76
2.0
76
100
0
306
26
14
19
39
1.90
79336129--79336167
17
2.2
19
86
9
55
48
5
5
41
1.47
79339453--79339504
20
2.5
20
87
3
77
25
13
11
50
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79342692--79342850
43
3.7
43
76
5
151
28
13
25
32
1.93
79344290--79344343
27
2.0
27
100
0
108
29
25
18
25
1.98
79352138--79352206
34
2.0
35
85
2
95
23
7
24
44
1.78
79355599--79355628
3
10.0
3
100
0
60
66
0
33
0
0.92
79364514--79364560
8
5.8
8
76
14
51
63
0
2
34
1.06
79364871--79364895
3
8.3
3
100
0
50
0
32
0
68
0.90
79381037--79381066
15
2.0
15
100
0
60
26
13
6
53
1.64
79382694--79382732
19
2.0
20
95
5
71
17
0
10
71
1.12
79382694--79382758
19
2.9
23
84
13
66
24
0
9
66
1.21
79383811--79383849
20
2.0
20
89
0
60
51
0
0
48
1.00
79384008--79384156
76
2.0
76
97
0
280
30
10
12
46
1.75
79389963--79390060
33
2.9
35
73
19
91
46
2
0
51
1.12
79391769--79391873
13
7.5
13
70
13
59
57
3
1
37
1.28
79391905--79391945
15
2.7
15
84
0
55
60
4
0
34
1.18
79392654--79392680
2
13.5
2
100
0
54
0
51
0
48
1.00
79393504--79393551
25
1.9
25
95
0
87
29
10
31
29
1.90
79393841--79393898
29
2.0
29
89
0
89
24
36
20
18
1.95
79393889--79394091
74
2.7
75
90
4
347
33
19
15
31
1.93
79394036--79394332
85
3.4
84
84
6
364
32
20
18
28
1.96
79394247--79394276
14
2.1
14
93
0
51
66
6
10
16
1.41
79393962--79394405
173
2.7
163
80
11
483
32
20
18
28
1.96
79397733--79397891
74
2.1
74
100
0
318
19
25
24
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79402694--79402718
4
6.2
4
100
0
50
52
0
24
24
1.48
79402698--79402752
22
2.5
22
87
3
74
47
3
21
27
1.68
79406461--79406512
19
2.7
20
79
11
54
67
1
3
26
1.18
79406472--79406639
73
2.4
68
77
12
167
57
2
5
35
1.35
79406535--79406616
42
2.0
40
81
13
94
57
2
2
37
1.25
79406542--79406618
24
3.4
22
75
22
70
55
2
2
38
1.27
79406671--79406731
2
31.5
2
80
12
65
55
3
0
40
1.16
79411596--79411625
14
2.1
15
93
6
53
70
0
0
30
0.88
79432204--79432265
20
3.1
21
83
4
67
38
17
6
37
1.76
79432218--79432266
20
2.5
20
86
0
71
36
20
6
36
1.78
79432518--79432645
22
5.6
23
75
10
75
39
21
17
22
1.93
79444005--79444034
5
6.2
5
92
7
53
80
0
0
20
0.72
79454140--79454190
22
2.3
22
82
3
66
35
3
0
60
1.15
79454140--79454199
23
2.6
22
81
7
66
36
3
0
60
1.14
79460169--79460230
26
2.6
22
75
18
70
69
8
6
16
1.34
79460244--79460324
6
13.5
6
83
5
56
56
3
8
30
1.47
79460272--79460739
3
158.0
3
69
12
227
60
1
7
30
1.35
79461075--79461316
121
2.0
120
97
0
457
40
18
20
20
1.91
79467348--79467525
27
6.6
27
83
3
205
26
15
28
29
1.96
79467349--79467504
82
1.9
81
88
3
233
26
15
28
29
1.96
79467345--79467525
82
2.2
81
83
2
229
27
15
27
29
1.96
79476122--79476156
4
8.8
4
87
0
52
71
2
2
22
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79476200--79476248
3
17.0
3
78
16
50
65
2
2
30
1.15
79476200--79476248
15
3.1
16
82
8
64
65
2
2
30
1.15
79476532--79476588
24
2.2
27
81
12
66
50
5
8
35
1.56
79476857--79476910
22
2.5
21
79
8
56
57
5
5
31
1.45
79476954--79476999
23
2.0
23
83
8
58
43
2
13
41
1.55
79477080--79477119
20
2.0
21
90
5
64
65
5
2
27
1.27
79477122--79477190
20
3.3
20
72
9
57
60
1
10
27
1.37
79478966--79479094
46
2.8
46
86
0
186
20
22
27
29
1.99
79483338--79483687
47
7.4
47
90
0
529
32
8
30
28
1.86
79492700--79492749
25
2.0
25
84
0
64
38
14
10
38
1.79
79497490--79497530
21
2.0
20
86
9
57
26
0
19
53
1.45
79499024--79499083
30
2.0
30
93
0
102
53
23
16
6
1.66
79500103--79500136
17
2.1
15
89
10
50
0
11
0
88
0.52
79500423--79500475
28
1.9
28
84
3
72
60
1
1
35
1.19
79509910--79509944
6
5.8
6
93
0
61
2
0
80
17
0.84
79512296--79512320
8
3.1
8
100
0
50
84
0
0
16
0.63
79514028--79514054
6
4.5
6
100
0
54
0
66
18
14
1.25
79520739--79520827
41
2.1
42
83
6
110
68
5
0
25
1.11
79520752--79520817
24
3.2
20
70
29
59
66
6
0
27
1.15
79522169--79522222
25
2.1
26
83
16
69
50
5
5
38
1.49
79523169--79523214
13
3.5
13
79
5
56
65
0
2
32
1.05
79523716--79523759
23
2.0
20
83
12
52
50
2
0
47
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79523950--79524041
46
2.0
46
95
0
166
30
19
8
41
1.82
79524296--79524353
29
2.0
30
89
3
91
25
22
5
46
1.72
79526351--79526376
7
3.7
7
100
0
52
42
0
0
57
0.98
79526349--79526392
19
2.4
19
85
11
56
45
0
0
54
0.99
79527284--79527394
41
2.8
40
74
9
120
24
16
24
35
1.95
79527287--79527391
37
2.7
38
77
5
104
23
16
24
35
1.95
79533703--79533740
18
2.2
18
90
9
62
18
5
5
71
1.25
79538175--79538212
18
2.2
18
90
9
62
21
5
2
71
1.19
79538244--79538302
31
1.9
31
93
6
102
44
0
1
54
1.10
79544873--79545136
46
5.7
46
93
0
413
22
23
14
39
1.91
79547876--79547956
29
2.7
30
78
14
105
24
4
14
55
1.59
79548352--79548390
9
4.3
9
86
0
60
46
10
10
33
1.72
79549737--79549775
6
6.5
6
87
0
51
48
7
17
25
1.74
79549737--79549775
12
3.2
12
92
0
60
48
7
17
25
1.74
79549737--79549775
18
2.2
18
95
0
69
48
7
17
25
1.74
79550373--79550421
23
2.1
23
100
0
98
20
34
4
40
1.71
79551099--79551128
12
2.6
12
94
5
53
73
13
0
13
1.10
79551187--79551229
20
2.4
17
84
11
50
62
0
6
30
1.21
79556204--79556233
15
1.9
16
93
6
53
30
3
0
66
1.07
79556448--79556506
29
2.0
29
100
0
118
18
13
23
44
1.86
79558717--79558753
17
2.2
17
95
0
65
51
8
18
21
1.72
79563310--79563355
23
2.0
23
84
12
60
45
10
6
36
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79567028--79567072
23
2.0
23
82
8
56
37
8
13
40
1.76
79580999--79581057
26
2.2
26
93
3
100
25
6
23
44
1.78
79582017--79582060
18
2.4
19
84
3
63
45
13
20
20
1.85
79582017--79582060
6
7.2
6
79
5
52
45
13
20
20
1.85
79582041--79582150
45
2.4
45
89
3
159
41
15
18
24
1.89
79583216--79583252
17
2.1
17
90
10
56
16
5
2
75
1.10
79583254--79583303
25
2.0
26
84
11
68
48
4
0
48
1.20
79585076--79585103
14
2.0
14
100
0
56
50
28
0
21
1.49
79586784--79586821
19
2.0
19
89
0
58
39
28
2
28
1.70
79587840--79587931
19
4.8
19
73
13
66
63
3
4
29
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311