genome.fa.s12.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  187  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64317444--64317526	42	2.0	42	97	0	157	30	27	22	19	1.98
64318128--64318347	40	5.6	40	80	3	241	25	23	25	24	2.00
64318128--64318347	39	5.5	39	79	5	219	25	23	25	24	2.00
64318128--64318311	79	2.3	81	85	1	255	26	23	25	23	2.00
64326169--64326389	40	5.6	40	82	2	241	24	24	25	24	2.00
64329859--64329891	16	2.1	16	94	0	57	39	9	12	39	1.74
64332609--64332676	28	2.7	23	74	20	64	19	4	30	45	1.70
64332582--64332665	28	3.0	27	87	8	114	19	4	30	45	1.71
64336047--64336097	23	2.2	23	92	0	84	41	11	3	43	1.60
64341687--64341831	47	3.3	47	61	25	116	44	6	18	29	1.76
64341685--64341852	84	2.0	84	100	0	336	44	5	20	29	1.75
64350937--64351004	29	2.3	29	85	5	93	27	30	13	27	1.94
64351106--64351184	29	2.7	30	82	13	110	29	30	15	25	1.96
64359089--64359156	29	2.3	29	85	5	93	27	30	13	27	1.94
64359258--64359336	29	2.7	30	82	13	110	29	30	15	25	1.96
64369993--64370170	27	6.6	27	84	3	205	26	14	28	29	1.95
64369993--64370170	54	3.3	55	84	4	227	26	14	28	29	1.95
64371656--64371865	28	7.5	28	97	0	395	27	11	26	34	1.91
64375997--64376172	92	1.9	93	84	4	239	22	28	19	28	1.98
64381855--64381927	32	2.3	32	88	4	105	21	28	17	31	1.97
64382164--64382227	25	2.5	25	92	2	101	26	23	23	26	2.00
64389799--64389881	30	2.7	31	87	3	125	21	24	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64390102--64390172	25	2.8	25	91	2	97	29	21	22	26	1.99
64414310--64414377	29	2.3	29	85	5	93	27	30	13	27	1.94
64414200--64414525	173	1.9	173	98	0	625	30	24	14	30	1.94
64414478--64414556	29	2.7	29	82	2	104	30	31	13	24	1.94
64416646--64416804	27	5.9	27	82	10	191	34	22	23	19	1.96
64416646--64416807	54	3.0	54	91	2	247	34	22	24	19	1.96
64418369--64418476	26	4.2	26	93	0	189	36	24	7	32	1.83
64429556--64429727	93	1.8	93	94	0	308	28	29	20	20	1.98
64429549--64429724	46	3.8	46	78	12	207	29	29	20	20	1.98
64437098--64437226	46	2.8	46	95	0	222	29	29	21	19	1.98
64437106--64437245	46	3.0	45	88	4	140	28	29	21	20	1.98
64444105--64444164	27	2.2	27	100	0	120	15	28	40	16	1.89
64446790--64446835	21	2.2	21	84	7	58	41	2	17	39	1.62
64453983--64454020	19	2.0	19	85	10	51	18	10	2	68	1.30
64455617--64455735	29	4.2	29	78	6	127	27	27	15	29	1.96
64457170--64457203	8	4.1	8	96	3	59	11	2	38	47	1.55
64473476--64473505	15	2.1	14	93	6	51	46	0	16	36	1.47
64474072--64474158	44	2.0	44	88	4	131	41	1	10	47	1.45
64482313--64482454	48	3.0	47	85	6	196	27	17	24	30	1.97
64482326--64482534	42	4.7	42	72	12	123	27	18	25	29	1.98
64492076--64492251	68	2.6	68	78	12	175	21	27	15	34	1.94
64495630--64495690	30	2.0	30	87	0	86	31	22	6	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64498638--64498945	47	6.7	46	77	12	235	26	18	29	25	1.98
64498750--64498838	46	2.2	37	69	30	90	25	21	26	25	1.99
64499808--64499873	30	2.2	30	94	0	123	21	25	33	19	1.97
64506327--64506449	47	2.6	45	81	13	151	27	19	31	21	1.97
64509418--64509600	86	2.1	86	100	0	366	27	32	16	22	1.96
64520592--64520679	25	3.4	25	69	27	83	32	29	3	34	1.74
64520497--64521005	47	10.6	49	90	6	760	29	30	8	32	1.86
64520497--64521005	96	5.3	94	89	6	759	29	30	8	32	1.86
64520497--64521005	143	3.5	142	89	5	736	29	30	8	32	1.86
64525851--64526167	27	11.8	27	80	6	261	40	20	7	31	1.81
64526179--64526266	27	3.3	27	91	0	149	31	22	7	37	1.83
64525856--64526385	27	19.7	27	76	11	130	39	21	7	31	1.82
64525830--64526385	81	6.9	81	70	8	326	39	21	7	31	1.82
64526315--64526493	27	6.7	26	82	6	128	37	21	15	25	1.93
64525830--64526387	54	10.4	54	77	6	362	39	21	7	31	1.82
64526289--64526464	54	3.3	54	81	6	171	40	22	11	25	1.88
64526316--64526493	54	3.3	54	82	4	182	37	21	15	25	1.93
64526370--64526511	27	5.3	27	86	0	176	34	20	20	24	1.96
64526938--64527002	22	3.0	22	80	8	78	21	23	21	33	1.97
64527168--64527262	27	3.5	27	81	5	102	22	23	18	35	1.96
64527428--64527518	6	14.8	6	67	17	53	18	17	15	48	1.82
64527399--64527509	31	3.5	31	87	1	132	18	17	15	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64528209--64528286	38	2.1	38	95	0	138	39	25	3	30	1.74
64533681--64533705	11	2.3	11	100	0	50	84	0	0	16	0.63
64534531--64534753	69	3.3	69	89	4	344	26	7	22	43	1.80
64538420--64538476	22	2.6	23	86	5	73	49	7	0	43	1.29
64541108--64541150	19	2.3	19	84	4	61	46	0	0	53	1.00
64541109--64541149	18	2.2	18	86	4	55	46	0	0	53	1.00
64541160--64541201	16	2.5	17	81	14	52	54	0	0	45	0.99
64541313--64541350	19	2.0	19	94	0	67	57	2	0	39	1.12
64542279--64542325	22	2.1	22	100	0	94	38	25	10	25	1.88
64545782--64545826	21	2.2	20	96	4	81	24	6	33	35	1.82
64545787--64545833	21	2.2	21	92	0	76	25	6	31	36	1.81
64553302--64553350	24	2.0	24	96	0	89	32	10	28	28	1.90
64555302--64555385	38	2.2	38	97	0	159	27	19	22	30	1.98
64558851--64558911	27	2.3	27	97	2	115	26	47	9	16	1.77
64572396--64572460	32	2.0	32	100	0	130	27	41	9	21	1.83
64576212--64576736	280	1.9	280	91	0	863	33	19	20	27	1.96
64592912--64593935	84	12.1	84	82	4	1010	44	10	11	33	1.75
64592989--64593718	335	2.2	336	87	2	1036	44	9	11	33	1.74
64592989--64593813	335	2.4	328	83	6	881	44	10	12	33	1.75
64601013--64601168	43	3.6	43	77	10	158	24	17	26	32	1.97
64605427--64605534	29	3.8	29	79	6	112	25	28	16	28	1.97
64605606--64605639	18	1.9	18	88	5	52	20	38	23	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64610325--64610363	14	2.8	14	92	0	60	38	10	20	30	1.86
64610828--64610951	34	3.4	34	69	26	108	43	0	7	48	1.36
64610874--64610994	36	3.2	36	72	21	129	45	1	7	45	1.41
64610834--64611030	78	2.6	78	92	5	323	44	1	6	48	1.34
64611037--64611091	22	2.7	21	83	8	60	50	0	0	49	1.00
64611325--64611380	22	2.5	22	94	0	94	16	17	16	50	1.79
64613196--64613376	49	3.8	50	80	10	200	24	30	18	26	1.98
64613196--64613376	99	1.9	99	85	7	257	24	30	18	26	1.98
64617417--64617585	40	4.2	40	82	0	212	44	24	15	14	1.85
64618520--64618567	21	2.4	19	82	10	60	22	10	0	66	1.22
64622057--64622148	48	1.9	48	90	0	148	27	20	23	28	1.99
64632349--64632429	26	3.2	26	91	6	132	35	6	22	35	1.79
64632358--64632430	23	3.0	23	92	6	110	34	6	23	35	1.81
64634049--64634161	27	4.2	27	80	3	111	16	22	23	38	1.93
64634047--64634161	54	2.1	54	87	3	160	16	21	23	38	1.93
64636548--64636741	50	3.8	50	89	1	289	20	30	23	26	1.98
64636548--64636741	101	1.9	101	89	2	300	20	30	23	26	1.98
64637079--64637136	30	1.9	30	89	0	89	31	24	3	41	1.71
64644093--64644278	50	3.8	50	87	2	270	18	30	24	26	1.98
64644441--64644472	13	2.5	13	94	0	55	56	12	0	31	1.37
64644684--64644741	30	1.9	30	89	0	89	31	24	3	41	1.71
64645537--64645639	49	2.1	49	92	0	170	25	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64645537--64645652	49	2.4	49	89	0	160	25	18	25	29	1.98
64647475--64647504	7	4.4	7	95	4	53	26	0	0	73	0.84
64648805--64648866	29	2.1	29	96	0	115	27	38	0	33	1.57
64649752--64649784	17	2.0	17	88	5	50	21	6	18	54	1.64
64650032--64650075	18	2.7	15	83	16	52	18	2	0	79	0.83
64655969--64656001	16	2.0	17	94	5	59	24	6	18	51	1.68
64655970--64656005	17	2.2	16	90	5	54	25	8	19	47	1.77
64663491--64663517	7	3.9	7	100	0	54	44	0	0	55	0.99
64664461--64664502	20	2.0	21	81	9	50	40	0	14	45	1.45
64678012--64678043	16	2.0	16	100	0	64	50	0	18	31	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311