genome.fa.s12.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Length:  102106374

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   

This is table  115  of  311  ( 37258 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38231532--38231570	17	2.3	17	95	0	69	61	0	0	38	0.96
38235775--38235822	6	8.0	6	100	0	96	66	0	0	33	0.92
38239200--38239248	20	2.3	21	82	6	55	32	2	6	59	1.34
38250726--38250879	54	3.0	52	86	7	224	47	18	20	13	1.82
38252087--38252185	43	2.3	46	81	13	120	31	17	23	28	1.97
38251995--38253042	176	6.0	176	88	2	1457	32	18	23	26	1.97
38252439--38252533	43	2.2	46	85	11	128	29	15	26	28	1.96
38252614--38252708	43	2.2	45	80	14	110	29	16	26	27	1.97
38251995--38253042	526	2.0	529	87	3	1504	32	18	23	26	1.97
38253282--38253308	7	3.9	7	100	0	54	74	25	0	0	0.83
38255427--38255603	44	3.8	49	77	16	189	28	29	20	20	1.98
38255434--38255603	93	1.8	91	94	2	304	28	29	21	21	1.98
38262140--38262311	93	1.8	93	96	0	317	27	29	21	20	1.98
38262133--38262308	46	3.8	46	79	12	216	28	29	21	20	1.98
38292152--38292231	1	80.0	1	100	0	160	0	0	100	0	0.00
38292343--38292377	1	35.0	1	88	0	52	94	0	5	0	0.32
38292343--38292377	15	2.3	15	100	0	70	94	0	5	0	0.32
38298116--38298299	40	4.6	40	82	6	196	23	20	27	28	1.99
38298116--38298296	80	2.3	81	83	9	221	23	20	27	27	1.99
38298184--38298346	40	4.1	39	82	7	141	26	20	26	26	1.99
38304774--38305082	166	1.9	164	91	1	501	47	11	11	28	1.76
38306945--38306973	10	2.7	11	89	10	51	48	17	0	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38325916--38326012	28	3.4	29	84	8	103	35	22	22	19	1.96
38326426--38326457	8	4.0	8	91	0	55	3	25	25	46	1.67
38327430--38327500	24	3.0	24	95	0	124	25	38	1	35	1.65
38327407--38327500	48	1.9	48	83	10	120	24	37	3	35	1.72
38333785--38333856	29	2.5	29	88	2	101	34	22	25	18	1.96
38334273--38334309	8	4.6	8	93	0	56	5	24	21	48	1.71
38335276--38335346	24	3.0	24	93	0	124	26	36	0	36	1.57
38350283--38350375	42	2.2	42	86	3	125	30	15	23	31	1.95
38350573--38350602	16	1.9	15	93	6	51	26	13	23	36	1.92
38353060--38353118	30	1.9	30	82	3	73	47	3	22	27	1.67
38353331--38353394	29	2.1	31	83	11	80	35	0	3	60	1.12
38353372--38353396	8	3.1	8	100	0	50	24	0	0	76	0.80
38356834--38356862	12	2.4	12	100	0	58	65	0	10	24	1.23
38357773--38357822	10	5.0	10	83	9	66	70	0	6	24	1.10
38358487--38358668	96	1.9	97	93	1	312	31	26	14	26	1.95
38361260--38361326	19	3.6	19	69	23	52	74	1	5	17	1.09
38364835--38365016	40	4.6	40	90	2	287	23	21	26	27	1.99
38375803--38375835	17	1.9	17	93	0	57	60	3	12	24	1.46
38376508--38376559	10	5.1	10	85	2	59	69	0	7	23	1.14
38376510--38376559	20	2.5	21	83	6	68	70	0	8	22	1.13
38378252--38378278	14	1.9	14	100	0	54	40	14	7	37	1.74
38379017--38379065	23	2.1	24	85	11	66	30	14	4	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38379187--38379307	42	2.8	45	86	6	160	35	27	14	22	1.93
38379194--38379307	44	2.7	42	83	8	133	35	28	14	21	1.93
38385375--38385528	42	3.6	42	80	10	170	28	16	24	30	1.96
38390318--38390432	29	4.0	29	74	9	110	26	30	13	28	1.94
38390324--38390434	58	1.9	57	82	8	136	26	30	14	28	1.95
38390655--38390698	16	2.7	17	86	10	65	11	15	18	54	1.70
38396401--38396554	42	3.6	42	82	6	186	27	16	25	30	1.96
38396401--38396562	85	1.9	84	83	6	211	27	15	25	31	1.96
38400285--38400319	18	2.0	18	88	5	54	28	14	20	37	1.91
38401348--38401459	29	3.9	29	71	10	86	25	33	15	25	1.95
38401699--38401749	8	6.4	8	83	0	66	7	23	17	50	1.72
38401699--38401749	16	3.2	16	97	0	93	7	23	17	50	1.72
38410402--38410664	40	6.6	40	87	3	316	26	28	20	24	1.99
38417591--38417853	40	6.6	40	87	3	316	26	28	20	24	1.99
38419355--38419462	28	3.8	28	75	3	90	25	30	13	30	1.94
38419537--38419583	10	4.9	10	79	10	53	14	38	17	29	1.89
38419536--38419573	19	2.0	19	94	0	67	15	39	15	28	1.89
38419536--38419583	19	2.5	19	89	0	60	16	37	16	29	1.91
38422733--38422764	17	1.9	16	93	6	55	31	28	12	28	1.93
38430648--38430755	42	2.6	42	95	0	189	18	31	29	20	1.96
38430688--38430927	109	2.2	109	97	0	462	26	30	25	17	1.97
38440862--38441023	81	2.0	81	96	0	297	38	16	21	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38442783--38442853	36	2.0	36	97	0	133	43	19	11	25	1.84
38449657--38449723	27	2.5	27	73	23	70	38	16	17	26	1.91
38456143--38456325	66	2.8	64	77	9	194	30	17	29	22	1.97
38460554--38460704	68	2.2	68	80	9	166	32	17	29	21	1.96
38468036--38468082	18	2.8	17	87	6	60	34	0	0	65	0.93
38469598--38469648	25	2.1	24	85	10	68	56	7	1	33	1.39
38469754--38469798	22	2.0	23	82	4	56	60	6	13	20	1.55
38475544--38475598	25	2.2	24	93	3	92	49	3	14	32	1.61
38475626--38475718	45	2.1	45	97	0	177	48	16	10	24	1.78
38476919--38476977	30	2.0	30	83	6	75	16	22	30	30	1.96
38477002--38477038	11	3.5	11	92	3	58	0	18	13	67	1.23
38478433--38478487	7	7.9	7	86	8	76	29	10	0	60	1.31
38493151--38493185	18	2.0	18	88	5	54	20	42	14	22	1.88
38495488--38495659	86	2.0	86	98	0	335	31	13	29	24	1.94
38495746--38495795	25	2.0	25	100	0	100	40	12	12	36	1.79
38496203--38496373	46	3.7	46	80	6	175	22	27	21	29	1.99
38498103--38498228	47	2.7	45	82	13	150	23	30	19	26	1.98
38500777--38500890	55	2.1	55	89	0	174	14	22	34	28	1.93
38501921--38502059	21	6.6	21	73	3	109	43	17	21	17	1.88
38501921--38502076	42	3.7	42	80	0	170	43	17	22	16	1.87
38513280--38513390	50	2.2	50	90	0	177	24	29	16	29	1.96
38515567--38515623	20	2.8	21	78	2	71	36	17	28	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38518004--38518062	26	2.2	27	84	3	75	42	6	15	35	1.73
38519628--38519752	47	2.7	48	79	8	125	26	28	16	29	1.96
38527337--38527586	47	5.3	46	77	9	188	22	30	20	26	1.98
38527369--38527488	46	2.6	46	78	9	118	21	33	20	25	1.97
38535497--38535609	12	9.8	12	66	18	53	40	3	3	52	1.36
38541211--38541244	16	2.1	17	89	10	54	23	14	0	61	1.33
38549686--38549855	46	3.7	46	76	13	186	28	28	20	22	1.99
38549691--38549861	93	1.8	93	91	0	279	28	28	21	21	1.98
38550284--38550343	30	2.0	30	90	0	93	30	25	8	36	1.85
38554078--38554175	27	3.5	28	90	2	135	26	13	28	31	1.94
38554106--38554188	27	3.0	27	87	5	96	30	12	25	32	1.92
38554078--38554189	28	4.0	27	83	6	98	28	12	25	33	1.92
38562122--38562218	28	3.4	29	87	5	101	26	12	28	31	1.93
38562122--38562220	27	3.5	28	88	4	128	26	13	29	31	1.93
38562151--38562234	27	3.0	27	87	5	96	29	11	25	33	1.91
38564329--38564373	22	2.0	22	100	0	90	33	8	22	35	1.85
38568182--38568301	46	2.6	45	85	8	147	22	30	18	29	1.97
38568227--38568344	46	2.5	44	82	11	130	22	27	20	29	1.98
38590389--38590446	30	1.9	30	89	6	91	22	39	29	8	1.84
38594887--38594990	52	2.0	52	96	0	190	47	11	19	22	1.81
38597935--38597973	15	2.5	15	87	8	51	0	33	2	64	1.08
38599866--38599915	6	8.3	6	90	0	73	14	6	0	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38603997--38604097	24	4.2	24	94	0	157	32	1	40	24	1.67
38605499--38605609	27	4.2	26	87	5	141	17	24	21	36	1.94
38610520--38610596	24	3.2	24	92	0	127	32	2	41	23	1.68
38611972--38612082	27	4.2	26	88	5	150	16	24	22	36	1.94
38620724--38620749	5	5.2	5	100	0	52	0	61	0	38	0.96
38621522--38621572	24	2.0	24	85	14	68	64	0	9	25	1.24
38627808--38627853	24	1.9	24	90	0	74	56	6	2	34	1.37
38633308--38633520	18	11.4	18	67	13	90	36	14	12	36	1.84
38633299--38633381	36	2.3	36	82	0	94	38	14	9	37	1.79
38633387--38633520	54	2.5	54	78	7	137	37	14	11	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311